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The map label for this gene is rbsB [H]

Identifier: 62390141

GI number: 62390141

Start: 1321469

End: 1322413

Strand: Direct

Name: rbsB [H]

Synonym: cg1413

Alternate gene names: 62390141

Gene position: 1321469-1322413 (Clockwise)

Preceding gene: 62390140

Following gene: 62390142

Centisome position: 40.26

GC content: 56.83

Gene sequence:

>945_bases
ATGTACGCTCGTAAACTTATTGCTCTGTCCGCTTCTGTCGTTTTGGCTTTCAGCTTGTCTGCTTGCAACCGTGAATCTTC
TGGCACCAGCGCAGACGGCGGTTCTGCGGATGGGTCGATCACCTTGGCTCTGTCTACCCAGACCAACCCGTTCTTTGTGC
AGCTTCGTGATGGTGCCCAGGAAAAGGCTGATGAATTGGGCGTGACCCTCAATGTTCAGGATGCTTCCGATGACGCTGCA
ACGCAGGCCAACCAGCTCAACAACGCTGTCACCACCGGTGCTGGCGTGGTGATTGTCAACCCAACTGATTCTGATGCTGT
GGTGCCGTCGGTGGAAGCTCTCAACCAGGCTGACATTCCTGTTGTGGCTGTCGACCGTTCCTCCAATGGTGGCGAGGTGG
CGTCCTTCGTGGCATCTGACAACGTTGCTGGCGGCGCGCAGGCTGCTGCAGCCCTGGCAGAGGCGATCGGTGGCGAAGGT
GAAATCCTCATGCTGCAAGGCATTGCGGGATCCTCTGCATCACGTGATCGTGGACAGGGATTTGAAGAGGAGATCGCTAA
GCATGAGGGCATTTCCATTGTGGCTAAGCAGACCGCCAACTTTGACCGCGGTGAGGGCCTGGACGTGGCAACTAACCTGC
TGCAGGCACACCCCAATGTGAAGGCGATCTTCGCGGAAAACGATGAGATGGCGTTGGGCGCAATCGAAGCCCTGGGTGCT
CGTGCTGGTGAAGATGTCATCGTTGTCGGTTTCGATGGCACCAATGATGGTCTGGCAGCGGTTGAAGATGGACGCATGTT
GGCCACCGTTGCTCAGCAGCCAGAAGAGCTGGGAGCAAAGGCTGTGGAAGAAGCAGCTAAGCTCCTGCGCGGTGAGGACG
CTGAAACAGAGGTACCAGTTGAGGTTGTCACTGTGAAGCTCGACAACGTCGCGGACTTCAAGTAG

Upstream 100 bases:

>100_bases
CTGGCAGCAGATTGTCATCGGTTGTGTCATCGCGCTTGCGGTGGGCTTCGATGTCATCCGAAACAAAACCTCTAAGTAAT
TCCTGAAAGGAAATTTTCAC

Downstream 100 bases:

>100_bases
TCGGCGATGAAAAAGTCCGGTTTACTAAACCCCGATCTGTGTTACGCCATCGCGCGGCTCGGGCACACCGATACCTGGGC
AGTGGCAGATTGCGGATTAC

Product: sugar-binding protein

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 314; Mature: 314

Protein sequence:

>314_residues
MYARKLIALSASVVLAFSLSACNRESSGTSADGGSADGSITLALSTQTNPFFVQLRDGAQEKADELGVTLNVQDASDDAA
TQANQLNNAVTTGAGVVIVNPTDSDAVVPSVEALNQADIPVVAVDRSSNGGEVASFVASDNVAGGAQAAAALAEAIGGEG
EILMLQGIAGSSASRDRGQGFEEEIAKHEGISIVAKQTANFDRGEGLDVATNLLQAHPNVKAIFAENDEMALGAIEALGA
RAGEDVIVVGFDGTNDGLAAVEDGRMLATVAQQPEELGAKAVEEAAKLLRGEDAETEVPVEVVTVKLDNVADFK

Sequences:

>Translated_314_residues
MYARKLIALSASVVLAFSLSACNRESSGTSADGGSADGSITLALSTQTNPFFVQLRDGAQEKADELGVTLNVQDASDDAA
TQANQLNNAVTTGAGVVIVNPTDSDAVVPSVEALNQADIPVVAVDRSSNGGEVASFVASDNVAGGAQAAAALAEAIGGEG
EILMLQGIAGSSASRDRGQGFEEEIAKHEGISIVAKQTANFDRGEGLDVATNLLQAHPNVKAIFAENDEMALGAIEALGA
RAGEDVIVVGFDGTNDGLAAVEDGRMLATVAQQPEELGAKAVEEAAKLLRGEDAETEVPVEVVTVKLDNVADFK
>Mature_314_residues
MYARKLIALSASVVLAFSLSACNRESSGTSADGGSADGSITLALSTQTNPFFVQLRDGAQEKADELGVTLNVQDASDDAA
TQANQLNNAVTTGAGVVIVNPTDSDAVVPSVEALNQADIPVVAVDRSSNGGEVASFVASDNVAGGAQAAAALAEAIGGEG
EILMLQGIAGSSASRDRGQGFEEEIAKHEGISIVAKQTANFDRGEGLDVATNLLQAHPNVKAIFAENDEMALGAIEALGA
RAGEDVIVVGFDGTNDGLAAVEDGRMLATVAQQPEELGAKAVEEAAKLLRGEDAETEVPVEVVTVKLDNVADFK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=305, Percent_Identity=45.9016393442623, Blast_Score=265, Evalue=3e-72,
Organism=Escherichia coli, GI1790526, Length=286, Percent_Identity=35.3146853146853, Blast_Score=138, Evalue=4e-34,
Organism=Escherichia coli, GI1790674, Length=226, Percent_Identity=28.3185840707965, Blast_Score=100, Evalue=2e-22,
Organism=Escherichia coli, GI1790194, Length=252, Percent_Identity=25, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786540, Length=257, Percent_Identity=27.2373540856031, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 31950; Mature: 31950

Theoretical pI: Translated: 3.89; Mature: 3.89

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYARKLIALSASVVLAFSLSACNRESSGTSADGGSADGSITLALSTQTNPFFVQLRDGAQ
CCCHHHHHHHHHEEEEEEHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCH
EKADELGVTLNVQDASDDAATQANQLNNAVTTGAGVVIVNPTDSDAVVPSVEALNQADIP
HHHHHCCCEEEEECCCCHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCCHHHCCCCCCC
VVAVDRSSNGGEVASFVASDNVAGGAQAAAALAEAIGGEGEILMLQGIAGSSASRDRGQG
EEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC
FEEEIAKHEGISIVAKQTANFDRGEGLDVATNLLQAHPNVKAIFAENDEMALGAIEALGA
HHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCC
RAGEDVIVVGFDGTNDGLAAVEDGRMLATVAQQPEELGAKAVEEAAKLLRGEDAETEVPV
CCCCCEEEEEECCCCCCCEEECCCCEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCE
EVVTVKLDNVADFK
EEEEEEECCCCCCC
>Mature Secondary Structure
MYARKLIALSASVVLAFSLSACNRESSGTSADGGSADGSITLALSTQTNPFFVQLRDGAQ
CCCHHHHHHHHHEEEEEEHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCH
EKADELGVTLNVQDASDDAATQANQLNNAVTTGAGVVIVNPTDSDAVVPSVEALNQADIP
HHHHHCCCEEEEECCCCHHHHHHHHHCCCEECCCCEEEECCCCCCCCCCCHHHCCCCCCC
VVAVDRSSNGGEVASFVASDNVAGGAQAAAALAEAIGGEGEILMLQGIAGSSASRDRGQG
EEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCC
FEEEIAKHEGISIVAKQTANFDRGEGLDVATNLLQAHPNVKAIFAENDEMALGAIEALGA
HHHHHHHHCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHCC
RAGEDVIVVGFDGTNDGLAAVEDGRMLATVAQQPEELGAKAVEEAAKLLRGEDAETEVPV
CCCCCEEEEEECCCCCCCEEECCCCEEEHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCE
EVVTVKLDNVADFK
EEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 6313683; 7686882; 9278503; 3011793; 3011794; 8899705; 9298646; 1583688; 7982928; 9641984 [H]