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The map label for this gene is ydiF [H]

Identifier: 62389949

GI number: 62389949

Start: 1111261

End: 1112904

Strand: Direct

Name: ydiF [H]

Synonym: cg1207

Alternate gene names: 62389949

Gene position: 1111261-1112904 (Clockwise)

Preceding gene: 62389948

Following gene: 62389951

Centisome position: 33.85

GC content: 54.99

Gene sequence:

>1644_bases
ATGACCGAAACACTTGTGGTGAATGGCCTTGCAGGCGGCTATGGGCACCGCACATTATTTAACGATGTGAATCTCACCGT
AGCTGCCGGCGATGTCGTGGGCGTTGTCGGCGTCAATGGCGCTGGTAAATCCACATTTCTAAAAATTCTGGCGGGCGTGG
AAAAGCCACTGGCTGGAACTATCGCGCTTTCGCCAGCCGATGCTTTTGTGGGCTACTTGCCACAGGAACACACCCGCACG
TCTGGAGAGACGATCGCAGTTTACATTGCTCGTCGAACCGGCTGCCAAGCTGCAACAACTGCCATGGATGACACCGCCGA
AGCGTTTGGTGCGGATCCAGACAACGCTGCCTTGGCCGATGCATACGCCGAGGCGCTGGATCGGTGGATGGCCAGTGGCG
CAGCCGATTTGGATGAACGCATCCCCATCGTGCTCGCTGATTTGGGCTTTGAGCTTCCCACCTCGACGCTGATGGAAGGA
CTTTCAGGCGGGCAGGCAGCCCGGGTCGGGCTGGCGGCGTTACTGTTGTCACGTTTTGACATTGTGCTTCTCGACGAGCC
CACCAACGATTTGGATCTCGACGGTCTTGAGCAACTGGAGAATTTTGTTCAGGGGCTTCGCGGGGGAGTCGTACTGGTCA
GCCATGATCGTGAGTTTCTTTCCAGGTGTGTGACCACTGTGCTGGAACTCGATCTGCACCAAAATTCCCACCATGTTTAT
GGCGGTGGATATGATTCCTACCTTGAGGAACGCGCAGTGCTACGCCAGCACGCCCGTGACCAATATGAGGAATTTGCGGA
AAAGAAGAAGGACCTTGTGGCACGTGCTCGAACGCAGCGTGAATGGTCTAGTCACGGTGTCCGCAATGCTATTAAACGTG
CACCTGACAACGACAAACTTCGGAAGAAAGCCGCTGCGGAATCCAGTGAAAAGCAGGCTCAAAAAGTCCGCCAGATGGAA
AGCCGCATCGCTCGGTTAGAAGAAGTTGAAGAGCCACGTAAAGAATGGAAACTGCAGTTCAGCGTCGGTAAGGCGTCGCG
GTCAAGTTCTGTTGTTTCCACGTTGAATGATGCAAGCTTCACCCAAGGCGATTTCACCTTGGGACCAGTATCCATCCAAG
TAAATGCTGGCGATCGCATTGGCATCACAGGACCCAACGGTGCTGGTAAATCCACATTGCTGCGCGGACTATTGGGAAAC
CAAGAACCCACCAGCGGTACTGCCACGATGGGCACGAGCGTGGCGATCGGAGAAATCGATCAGGCACGAGCGTTACTTGA
TCCACAGTTGCCACTGATTTCTGCGTTTGAAAAGCATGTTCCAGACTTACCGATCAGTGAGGTGCGCACACTGCTCGCGA
AATTTGGGCTGAATGATAATCATGTGGAACGGGACGTCGAAAAGCTATCTCCTGGCGAGCGCACGCGCGCCGGACTTGCG
CTGCTACAGGTGCGGGGCGTCAACGTGCTTGTTCTTGATGAGCCCACCAACCACCTTGACCTGGAGGCCATCGAGCAATT
GGAGCAAGCGTTGGCCTCGTATGATGGTGTGTTGCTGCTGGTCACGCACGATCGTCGCATGTTGGACGCTGTGCAGACCA
ATCGTCGTTGGCATGTCGAGGCTGGCGAAGTTAGGGAGCTATAA

Upstream 100 bases:

>100_bases
TTCGGTCCGCTCTGGCAAAAATGGCTGGCTGCCACCTCGGCGCAGCAGCTTAAGGGCTGGGCTTAAATTGCTTGTCGACG
CCTAGTGCCACAATGGAGAC

Downstream 100 bases:

>100_bases
CCGTTTCCGTATTGATGCCATGGTGAATTGATCGCTTCACAGAACACAGGCGATCAATTTTCTTCGCGGCGCTGGCAATA
AGTTTGTCCTGCGCCTGCTG

Product: ABC transporter ATPase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 547; Mature: 546

Protein sequence:

>547_residues
MTETLVVNGLAGGYGHRTLFNDVNLTVAAGDVVGVVGVNGAGKSTFLKILAGVEKPLAGTIALSPADAFVGYLPQEHTRT
SGETIAVYIARRTGCQAATTAMDDTAEAFGADPDNAALADAYAEALDRWMASGAADLDERIPIVLADLGFELPTSTLMEG
LSGGQAARVGLAALLLSRFDIVLLDEPTNDLDLDGLEQLENFVQGLRGGVVLVSHDREFLSRCVTTVLELDLHQNSHHVY
GGGYDSYLEERAVLRQHARDQYEEFAEKKKDLVARARTQREWSSHGVRNAIKRAPDNDKLRKKAAAESSEKQAQKVRQME
SRIARLEEVEEPRKEWKLQFSVGKASRSSSVVSTLNDASFTQGDFTLGPVSIQVNAGDRIGITGPNGAGKSTLLRGLLGN
QEPTSGTATMGTSVAIGEIDQARALLDPQLPLISAFEKHVPDLPISEVRTLLAKFGLNDNHVERDVEKLSPGERTRAGLA
LLQVRGVNVLVLDEPTNHLDLEAIEQLEQALASYDGVLLLVTHDRRMLDAVQTNRRWHVEAGEVREL

Sequences:

>Translated_547_residues
MTETLVVNGLAGGYGHRTLFNDVNLTVAAGDVVGVVGVNGAGKSTFLKILAGVEKPLAGTIALSPADAFVGYLPQEHTRT
SGETIAVYIARRTGCQAATTAMDDTAEAFGADPDNAALADAYAEALDRWMASGAADLDERIPIVLADLGFELPTSTLMEG
LSGGQAARVGLAALLLSRFDIVLLDEPTNDLDLDGLEQLENFVQGLRGGVVLVSHDREFLSRCVTTVLELDLHQNSHHVY
GGGYDSYLEERAVLRQHARDQYEEFAEKKKDLVARARTQREWSSHGVRNAIKRAPDNDKLRKKAAAESSEKQAQKVRQME
SRIARLEEVEEPRKEWKLQFSVGKASRSSSVVSTLNDASFTQGDFTLGPVSIQVNAGDRIGITGPNGAGKSTLLRGLLGN
QEPTSGTATMGTSVAIGEIDQARALLDPQLPLISAFEKHVPDLPISEVRTLLAKFGLNDNHVERDVEKLSPGERTRAGLA
LLQVRGVNVLVLDEPTNHLDLEAIEQLEQALASYDGVLLLVTHDRRMLDAVQTNRRWHVEAGEVREL
>Mature_546_residues
TETLVVNGLAGGYGHRTLFNDVNLTVAAGDVVGVVGVNGAGKSTFLKILAGVEKPLAGTIALSPADAFVGYLPQEHTRTS
GETIAVYIARRTGCQAATTAMDDTAEAFGADPDNAALADAYAEALDRWMASGAADLDERIPIVLADLGFELPTSTLMEGL
SGGQAARVGLAALLLSRFDIVLLDEPTNDLDLDGLEQLENFVQGLRGGVVLVSHDREFLSRCVTTVLELDLHQNSHHVYG
GGYDSYLEERAVLRQHARDQYEEFAEKKKDLVARARTQREWSSHGVRNAIKRAPDNDKLRKKAAAESSEKQAQKVRQMES
RIARLEEVEEPRKEWKLQFSVGKASRSSSVVSTLNDASFTQGDFTLGPVSIQVNAGDRIGITGPNGAGKSTLLRGLLGNQ
EPTSGTATMGTSVAIGEIDQARALLDPQLPLISAFEKHVPDLPISEVRTLLAKFGLNDNHVERDVEKLSPGERTRAGLAL
LQVRGVNVLVLDEPTNHLDLEAIEQLEQALASYDGVLLLVTHDRRMLDAVQTNRRWHVEAGEVREL

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=540, Percent_Identity=29.0740740740741, Blast_Score=180, Evalue=3e-45,
Organism=Homo sapiens, GI27881506, Length=536, Percent_Identity=28.1716417910448, Blast_Score=165, Evalue=1e-40,
Organism=Homo sapiens, GI10947137, Length=536, Percent_Identity=28.1716417910448, Blast_Score=165, Evalue=1e-40,
Organism=Homo sapiens, GI10947135, Length=537, Percent_Identity=29.4227188081937, Blast_Score=158, Evalue=1e-38,
Organism=Homo sapiens, GI69354671, Length=537, Percent_Identity=29.4227188081937, Blast_Score=158, Evalue=2e-38,
Organism=Escherichia coli, GI2367384, Length=533, Percent_Identity=31.3320825515947, Blast_Score=211, Evalue=1e-55,
Organism=Escherichia coli, GI1787182, Length=532, Percent_Identity=31.5789473684211, Blast_Score=192, Evalue=4e-50,
Organism=Escherichia coli, GI1789751, Length=542, Percent_Identity=30.2583025830258, Blast_Score=191, Evalue=1e-49,
Organism=Escherichia coli, GI1787041, Length=546, Percent_Identity=28.9377289377289, Blast_Score=181, Evalue=1e-46,
Organism=Escherichia coli, GI1786345, Length=228, Percent_Identity=29.3859649122807, Blast_Score=69, Evalue=7e-13,
Organism=Escherichia coli, GI87082064, Length=200, Percent_Identity=30, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788165, Length=192, Percent_Identity=33.3333333333333, Blast_Score=64, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=546, Percent_Identity=28.5714285714286, Blast_Score=176, Evalue=2e-44,
Organism=Caenorhabditis elegans, GI17555318, Length=543, Percent_Identity=28.3609576427256, Blast_Score=174, Evalue=8e-44,
Organism=Caenorhabditis elegans, GI17553372, Length=539, Percent_Identity=28.5714285714286, Blast_Score=164, Evalue=1e-40,
Organism=Saccharomyces cerevisiae, GI6320874, Length=546, Percent_Identity=29.3040293040293, Blast_Score=172, Evalue=2e-43,
Organism=Saccharomyces cerevisiae, GI6321121, Length=567, Percent_Identity=26.984126984127, Blast_Score=167, Evalue=6e-42,
Organism=Saccharomyces cerevisiae, GI6324314, Length=166, Percent_Identity=31.3253012048193, Blast_Score=75, Evalue=2e-14,
Organism=Saccharomyces cerevisiae, GI6325030, Length=170, Percent_Identity=30.5882352941176, Blast_Score=70, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6323278, Length=166, Percent_Identity=30.7228915662651, Blast_Score=67, Evalue=6e-12,
Organism=Drosophila melanogaster, GI24641342, Length=529, Percent_Identity=29.8676748582231, Blast_Score=184, Evalue=1e-46,
Organism=Drosophila melanogaster, GI24666836, Length=540, Percent_Identity=28.3333333333333, Blast_Score=177, Evalue=2e-44,
Organism=Drosophila melanogaster, GI24642252, Length=521, Percent_Identity=28.0230326295585, Blast_Score=173, Evalue=3e-43,
Organism=Drosophila melanogaster, GI18859989, Length=521, Percent_Identity=28.0230326295585, Blast_Score=173, Evalue=3e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 59204; Mature: 59073

Theoretical pI: Translated: 4.89; Mature: 4.89

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETLVVNGLAGGYGHRTLFNDVNLTVAAGDVVGVVGVNGAGKSTFLKILAGVEKPLAGT
CCCEEEEECCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCHHHHHHHHHHCCCCCCCE
IALSPADAFVGYLPQEHTRTSGETIAVYIARRTGCQAATTAMDDTAEAFGADPDNAALAD
EEECCHHHHHHCCCCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHH
AYAEALDRWMASGAADLDERIPIVLADLGFELPTSTLMEGLSGGQAARVGLAALLLSRFD
HHHHHHHHHHHCCCCCHHHCCCEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCC
IVLLDEPTNDLDLDGLEQLENFVQGLRGGVVLVSHDREFLSRCVTTVLELDLHQNSHHVY
EEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEE
GGGYDSYLEERAVLRQHARDQYEEFAEKKKDLVARARTQREWSSHGVRNAIKRAPDNDKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
RKKAAAESSEKQAQKVRQMESRIARLEEVEEPRKEWKLQFSVGKASRSSSVVSTLNDASF
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHCCCCC
TQGDFTLGPVSIQVNAGDRIGITGPNGAGKSTLLRGLLGNQEPTSGTATMGTSVAIGEID
CCCCEEECCEEEEEECCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCHH
QARALLDPQLPLISAFEKHVPDLPISEVRTLLAKFGLNDNHVERDVEKLSPGERTRAGLA
HHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHH
LLQVRGVNVLVLDEPTNHLDLEAIEQLEQALASYDGVLLLVTHDRRMLDAVQTNRRWHVE
EEEECCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCEEEEC
AGEVREL
CCCCCCC
>Mature Secondary Structure 
TETLVVNGLAGGYGHRTLFNDVNLTVAAGDVVGVVGVNGAGKSTFLKILAGVEKPLAGT
CCEEEEECCCCCCCCCCEECCCEEEEEECCEEEEEECCCCCHHHHHHHHHHCCCCCCCE
IALSPADAFVGYLPQEHTRTSGETIAVYIARRTGCQAATTAMDDTAEAFGADPDNAALAD
EEECCHHHHHHCCCCHHCCCCCCEEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCHHHHH
AYAEALDRWMASGAADLDERIPIVLADLGFELPTSTLMEGLSGGQAARVGLAALLLSRFD
HHHHHHHHHHHCCCCCHHHCCCEEEECCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCC
IVLLDEPTNDLDLDGLEQLENFVQGLRGGVVLVSHDREFLSRCVTTVLELDLHQNSHHVY
EEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHHHCCCCCEEE
GGGYDSYLEERAVLRQHARDQYEEFAEKKKDLVARARTQREWSSHGVRNAIKRAPDNDKL
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHH
RKKAAAESSEKQAQKVRQMESRIARLEEVEEPRKEWKLQFSVGKASRSSSVVSTLNDASF
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCCHHHHHHHHCCCCC
TQGDFTLGPVSIQVNAGDRIGITGPNGAGKSTLLRGLLGNQEPTSGTATMGTSVAIGEID
CCCCEEECCEEEEEECCCEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEECCHH
QARALLDPQLPLISAFEKHVPDLPISEVRTLLAKFGLNDNHVERDVEKLSPGERTRAGLA
HHHHHCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHH
LLQVRGVNVLVLDEPTNHLDLEAIEQLEQALASYDGVLLLVTHDRRMLDAVQTNRRWHVE
EEEECCCEEEEECCCCCCCCHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHCCCEEEEC
AGEVREL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]