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The map label for this gene is pdxS

Identifier: 62389677

GI number: 62389677

Start: 832548

End: 833447

Strand: Direct

Name: pdxS

Synonym: cg0898

Alternate gene names: 62389677

Gene position: 832548-833447 (Clockwise)

Preceding gene: 62389675

Following gene: 62389678

Centisome position: 25.36

GC content: 60.89

Gene sequence:

>900_bases
ATGACCGAAACTCAAGAAACTTACCAAGCAACCACTCGTGTGAAGCGCGGCCTTGCCGACATGCTCAAGGGTGGTGTGAT
CATGGATGTGGTCACCCCTGAACAAGCGCGCATCGCCGAAGATGCAGGTGCCAGCGCAGTTATGGCACTCGAGCGCGTTC
CCGCCGATATCCGTTCTCAGGGCGGCGTTGCTCGCATGAGTGATCCTGACCTGATCGAAGGAATCGTCAATGCGGTCTCC
ATCCCGGTCATGGCGAAAGCTCGCATCGGTCACTTCGTGGAAGCTCAGGTTCTGGAAGCTCTCGGTGTTGATTTCATCGA
CGAGTCCGAAGTTCTCAGCCCTGCCGACTACACGCACCACATCAACAAGTGGAAGTTCGACGTTCCTTTCGTCTGTGGCG
CGACCAACCTCGGCGAAGCTTTGCGACGCATCACCGAAGGCGCTGCAATGATCCGTTCCAAGGGCGAAGCCGGCACCGGC
GATGTCTCTGAAGCTGTCCGTCACCTGCGCACCATCCGCGGCGACATCAATCGCCTGCGCTCCCTGGATGAGGATGAACT
CTTCGTCGCCGCCAAGGAATTCCAGGCACCATACGACCTGGTCCGCGAAGTCGCCTCCACCGGCAAGCTCCCTGTGGTCA
CCTTCGTTGCAGGTGGCGTCGCAACCCCAGCCGACGCTGCACTCGTGCGCCAAATGGGCGCCGAAGGCGTCTTTGTCGGC
TCCGGCATCTTCAAATCCGGCAATCCAGCCGCCCGCGCCGCAGCGATCGTCAAGGCTGCAACGCTTTTCGACGACCCCTC
CGTCATTGCCGACGTATCCCGCGGCCTGGGTGAAGCCATGGTGGGCATCAACGTATCCGACGTCCCAGCACCACACCGAC
TCGCCGAGCGCGGCTGGTGA

Upstream 100 bases:

>100_bases
TCGGCAAGCATGGCTTCATCGTCCTCAAAAAAGTGGTCTAATGCAAGTGACTGAAAGTGGATCTACCGCTAGTCCACTTT
GTGGCGTTGGATCATCTGTC

Downstream 100 bases:

>100_bases
TCGTTGGAGTTTTAGCTCTCCAGGGCGGGGTGGAAGAACACCTCACCGCCTTGGAAGCTCTCGGAGCGACGACCCGAAAA
GTACGTGTGCCAAAGGACCT

Product: pyridoxal biosynthesis lyase PdxS

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 298

Protein sequence:

>299_residues
MTETQETYQATTRVKRGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGIVNAVS
IPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPADYTHHINKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTG
DVSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQAPYDLVREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGVFVG
SGIFKSGNPAARAAAIVKAATLFDDPSVIADVSRGLGEAMVGINVSDVPAPHRLAERGW

Sequences:

>Translated_299_residues
MTETQETYQATTRVKRGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGIVNAVS
IPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPADYTHHINKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTG
DVSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQAPYDLVREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGVFVG
SGIFKSGNPAARAAAIVKAATLFDDPSVIADVSRGLGEAMVGINVSDVPAPHRLAERGW
>Mature_298_residues
TETQETYQATTRVKRGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRSQGGVARMSDPDLIEGIVNAVSI
PVMAKARIGHFVEAQVLEALGVDFIDESEVLSPADYTHHINKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGD
VSEAVRHLRTIRGDINRLRSLDEDELFVAAKEFQAPYDLVREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGVFVGS
GIFKSGNPAARAAAIVKAATLFDDPSVIADVSRGLGEAMVGINVSDVPAPHRLAERGW

Specific function: Involved in the production of pyridoxal phosphate, probably by incorporating ammonia into the pyridine ring

COG id: COG0214

COG function: function code H; Pyridoxine biosynthesis enzyme

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pdxS/SNZ family

Homologues:

Organism=Saccharomyces cerevisiae, GI6323743, Length=291, Percent_Identity=63.9175257731959, Blast_Score=374, Evalue=1e-104,
Organism=Saccharomyces cerevisiae, GI6321049, Length=294, Percent_Identity=63.6054421768708, Blast_Score=364, Evalue=1e-102,
Organism=Saccharomyces cerevisiae, GI6323996, Length=294, Percent_Identity=63.265306122449, Blast_Score=363, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): PDXS_CORGL (P82134)

Other databases:

- EMBL:   BA000036
- EMBL:   BX927150
- RefSeq:   NP_600016.1
- RefSeq:   YP_225079.1
- ProteinModelPortal:   P82134
- SMR:   P82134
- World-2DPAGE:   0001:P82134
- GeneID:   1018783
- GeneID:   3345506
- GenomeReviews:   BA000036_GR
- GenomeReviews:   BX927147_GR
- KEGG:   cgb:cg0898
- KEGG:   cgl:NCgl0754
- HOGENOM:   HBG292342
- OMA:   ARMSDPD
- PhylomeDB:   P82134
- ProtClustDB:   PRK04180
- BioCyc:   CGLU196627:CG0898-MONOMER
- HAMAP:   MF_01824
- InterPro:   IPR013785
- InterPro:   IPR011060
- InterPro:   IPR001852
- Gene3D:   G3DSA:3.20.20.70
- PIRSF:   PIRSF029271
- TIGRFAMs:   TIGR00343

Pfam domain/function: PF01680 SOR_SNZ; SSF51366 RibP_bind_barrel

EC number: NA

Molecular weight: Translated: 31661; Mature: 31530

Theoretical pI: Translated: 4.86; Mature: 4.86

Prosite motif: PS01235 PDXS_SNZ_1; PS51129 PDXS_SNZ_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTETQETYQATTRVKRGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRSQ
CCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCHHHHHHHHHCCHHHHHC
GGVARMSDPDLIEGIVNAVSIPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPADYTHH
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
INKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVRHLRTIRGDINRLR
CCCEECCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SLDEDELFVAAKEFQAPYDLVREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGVFVG
CCCCCHHEEHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEC
SGIFKSGNPAARAAAIVKAATLFDDPSVIADVSRGLGEAMVGINVSDVPAPHRLAERGW
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCC
>Mature Secondary Structure 
TETQETYQATTRVKRGLADMLKGGVIMDVVTPEQARIAEDAGASAVMALERVPADIRSQ
CCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHCCHHHHHHHHHCCHHHHHC
GGVARMSDPDLIEGIVNAVSIPVMAKARIGHFVEAQVLEALGVDFIDESEVLSPADYTHH
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHH
INKWKFDVPFVCGATNLGEALRRITEGAAMIRSKGEAGTGDVSEAVRHLRTIRGDINRLR
CCCEECCCCEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHH
SLDEDELFVAAKEFQAPYDLVREVASTGKLPVVTFVAGGVATPADAALVRQMGAEGVFVG
CCCCCHHEEHHHHHCCHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHCCCCEEEC
SGIFKSGNPAARAAAIVKAATLFDDPSVIADVSRGLGEAMVGINVSDVPAPHRLAERGW
CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12948626