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The map label for this gene is yddU [C]

Identifier: 59714349

GI number: 59714349

Start: 1320980

End: 1322905

Strand: Reverse

Name: yddU [C]

Synonym: VF_A1166

Alternate gene names: 59714349

Gene position: 1322905-1320980 (Counterclockwise)

Preceding gene: 59714350

Following gene: 59714348

Centisome position: 99.44

GC content: 34.63

Gene sequence:

>1926_bases
ATGACATTATATAAACAACTAGTAGCATGGATGACAGCTGTCTTTTTAATATTGATGATTTCTGTTTTTGCCATTGAATT
TCGAAATACACAAACCTTCTTAGAGAATCAACAACGCTCAGAAGTGAATAACACCATTAATACGGTTGGTTTAGCACTTG
CTCCTTATTTGGAAGATGAAGATAAAGTAGCCGCTGAATCCGTTATAAATGCTTTATTTGATGGAAGTTATTACTCTGCG
GTACGTTTAACATTGTTCACAACGAATGAGGAAGTTGTTCGAGTTTACCCTGTTAGAATAGATACCGTTCCAGAGTGGTT
TACTCAATTACACCTTTTTAGAACTATTTCTGAGAATCGTATTATAACAAGTGGTTGGTTGCAGTTAGCAGAAGTCGAAA
TTGTTACGCATCCTGGTTACGCTTATCAGCAACTCTGGAATGCTTTGATACAGTTAGCGATAACTTTCTTTGTTGTTATT
TGCCTTGGTACAGTAACTATTGCTTTTGTTGTTAAGCGTGCACTGTCTCCGCTTCAACAAATTATTATTAAGATGAAAGA
AGTAGCTAATAATAATTTTGAAAACAATTTACCAAAACCAAAGACAAAAGATCTTGAAGCTGTGATTGATGGGATCAATT
CGATGTCAGCACAGATAGCACAAAGTTTTCAGTCACAAGCTAAAGAGGCTGAAAAATTACGTGATAAAGTGTATTTAGAT
CCTATCTCAGGTCTAGGGAATAGAACCTTCTTTATGGGACAGTTAACAAATTGGTTAGCTGAGTCCTCCAAAGGTGGTGT
CGCTTTATTTAAAGTAAATTTTATCAATAAAGTATATGAGCAAGATGGTTATGAAGCTGGTGATGCTTTAGTTCGTGAAC
TGTCTGATTTATTAAAAGCAACGCTTCCTGCATCTAATGTCATTCTGACTCGTATTAACTCTTCTGAATTTGGTTTTATT
TTTCCAAATATTGAAGAAGATGAGTTAAAACTAGCTGCTGAAAATATTGTGGTTTATACCCAAGATATTAAAGGTGATCC
AACAGCAACCGCGCCTATTGATGCTGAGCTTGGCGTTGTATTTAATGAAACAAGGAAAACGACAACTGAAATATTATCAC
TTGCTGATAATGCATTAACATTAGCCCATTCAAATCCTCAAATGCCTTTTGGTTTTATTGCTGATGAAAGTGAGCATGAA
TTGATGGGTAAACAACAATGGAAAGCGTTTGTTGATGAAGCTATTAATGAGCACTTATTCCAATTTACGTTGCAGCTTGC
CACAACTCCTAACGGAACTGTTTTTCATCAAGAAGTTTTTTCGGCGATAGAAAAAGATGAGCAACGTTACTCTGCTAATC
AGTATTTATTTGCATTAGAACAACTGAATGAAACGACTTACTTTGATCAATTTGTTATTAGAACCATGATAGAAAGAGTT
TCATCAGGGGAAATAACACAACCTGTTGCGATTAACTTATCAAATCGAAGTGTGGATAACCCAAGCTTTGTTCGTTGGTT
AACTACGACACTGAAGAAACATAAATCTATTGCACCATTATTCCATTTTGAAATTCAAGAGAGTGCATTCATTGAGAATG
AAGATCATACGGCATTATTATGTAATGTAATTCGCTCTTCTGGTGCTGAATTTGGCGTTGATAATTTTGGACGTAATTTT
GAATCTTTAGAGTATATTAAATTATTCCGTCCTAATTATGTAAAACTTGATTATCTTTTTACCCATCAGTTAGATGATGA
AAAACAGCGCTATATTTTAGCTTCTATATCAAGAACAGCACAAAACCTTGGTATTACAACAATCGCATCACGCGTTGAAA
ACAAAGAACAATTGGATTTACTAGCAGAGCATAATGTTGATGTATTCCAAGGTTTCTTTATTAATGAAAAAGTGGAAGGC
ATTTAA

Upstream 100 bases:

>100_bases
TGGGAAGTCATCTCGTTTAAATCTATGGAATGATTTACGAAAACGAAATGATGACTTGAGATTAAATCACCCAATTTTGA
ATTATGATGAGTAGTGAGAA

Downstream 100 bases:

>100_bases
TATGAAGGATTCATTATTACATTCACTTTGTTATGTTAGTCGTTACTACGGACAAATAAATTCACCAGAAGCATTGATTA
ATGGATTGCCATTACAAGAT

Product: GGDEF/EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 641; Mature: 640

Protein sequence:

>641_residues
MTLYKQLVAWMTAVFLILMISVFAIEFRNTQTFLENQQRSEVNNTINTVGLALAPYLEDEDKVAAESVINALFDGSYYSA
VRLTLFTTNEEVVRVYPVRIDTVPEWFTQLHLFRTISENRIITSGWLQLAEVEIVTHPGYAYQQLWNALIQLAITFFVVI
CLGTVTIAFVVKRALSPLQQIIIKMKEVANNNFENNLPKPKTKDLEAVIDGINSMSAQIAQSFQSQAKEAEKLRDKVYLD
PISGLGNRTFFMGQLTNWLAESSKGGVALFKVNFINKVYEQDGYEAGDALVRELSDLLKATLPASNVILTRINSSEFGFI
FPNIEEDELKLAAENIVVYTQDIKGDPTATAPIDAELGVVFNETRKTTTEILSLADNALTLAHSNPQMPFGFIADESEHE
LMGKQQWKAFVDEAINEHLFQFTLQLATTPNGTVFHQEVFSAIEKDEQRYSANQYLFALEQLNETTYFDQFVIRTMIERV
SSGEITQPVAINLSNRSVDNPSFVRWLTTTLKKHKSIAPLFHFEIQESAFIENEDHTALLCNVIRSSGAEFGVDNFGRNF
ESLEYIKLFRPNYVKLDYLFTHQLDDEKQRYILASISRTAQNLGITTIASRVENKEQLDLLAEHNVDVFQGFFINEKVEG
I

Sequences:

>Translated_641_residues
MTLYKQLVAWMTAVFLILMISVFAIEFRNTQTFLENQQRSEVNNTINTVGLALAPYLEDEDKVAAESVINALFDGSYYSA
VRLTLFTTNEEVVRVYPVRIDTVPEWFTQLHLFRTISENRIITSGWLQLAEVEIVTHPGYAYQQLWNALIQLAITFFVVI
CLGTVTIAFVVKRALSPLQQIIIKMKEVANNNFENNLPKPKTKDLEAVIDGINSMSAQIAQSFQSQAKEAEKLRDKVYLD
PISGLGNRTFFMGQLTNWLAESSKGGVALFKVNFINKVYEQDGYEAGDALVRELSDLLKATLPASNVILTRINSSEFGFI
FPNIEEDELKLAAENIVVYTQDIKGDPTATAPIDAELGVVFNETRKTTTEILSLADNALTLAHSNPQMPFGFIADESEHE
LMGKQQWKAFVDEAINEHLFQFTLQLATTPNGTVFHQEVFSAIEKDEQRYSANQYLFALEQLNETTYFDQFVIRTMIERV
SSGEITQPVAINLSNRSVDNPSFVRWLTTTLKKHKSIAPLFHFEIQESAFIENEDHTALLCNVIRSSGAEFGVDNFGRNF
ESLEYIKLFRPNYVKLDYLFTHQLDDEKQRYILASISRTAQNLGITTIASRVENKEQLDLLAEHNVDVFQGFFINEKVEG
I
>Mature_640_residues
TLYKQLVAWMTAVFLILMISVFAIEFRNTQTFLENQQRSEVNNTINTVGLALAPYLEDEDKVAAESVINALFDGSYYSAV
RLTLFTTNEEVVRVYPVRIDTVPEWFTQLHLFRTISENRIITSGWLQLAEVEIVTHPGYAYQQLWNALIQLAITFFVVIC
LGTVTIAFVVKRALSPLQQIIIKMKEVANNNFENNLPKPKTKDLEAVIDGINSMSAQIAQSFQSQAKEAEKLRDKVYLDP
ISGLGNRTFFMGQLTNWLAESSKGGVALFKVNFINKVYEQDGYEAGDALVRELSDLLKATLPASNVILTRINSSEFGFIF
PNIEEDELKLAAENIVVYTQDIKGDPTATAPIDAELGVVFNETRKTTTEILSLADNALTLAHSNPQMPFGFIADESEHEL
MGKQQWKAFVDEAINEHLFQFTLQLATTPNGTVFHQEVFSAIEKDEQRYSANQYLFALEQLNETTYFDQFVIRTMIERVS
SGEITQPVAINLSNRSVDNPSFVRWLTTTLKKHKSIAPLFHFEIQESAFIENEDHTALLCNVIRSSGAEFGVDNFGRNFE
SLEYIKLFRPNYVKLDYLFTHQLDDEKQRYILASISRTAQNLGITTIASRVENKEQLDLLAEHNVDVFQGFFINEKVEGI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 PAS (PER-ARNT-SIM) domains [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=435, Percent_Identity=22.7586206896552, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1787541, Length=424, Percent_Identity=21.2264150943396, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1788849, Length=294, Percent_Identity=22.108843537415, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1789650, Length=522, Percent_Identity=18.007662835249, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI1790496, Length=146, Percent_Identity=28.0821917808219, Blast_Score=63, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013656
- InterPro:   IPR013655 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF08447 PAS_3; PF08448 PAS_4 [H]

EC number: NA

Molecular weight: Translated: 72693; Mature: 72562

Theoretical pI: Translated: 4.59; Mature: 4.59

Prosite motif: PS50885 HAMP ; PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTLYKQLVAWMTAVFLILMISVFAIEFRNTQTFLENQQRSEVNNTINTVGLALAPYLEDE
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DKVAAESVINALFDGSYYSAVRLTLFTTNEEVVRVYPVRIDTVPEWFTQLHLFRTISENR
HHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHCCCC
IITSGWLQLAEVEIVTHPGYAYQQLWNALIQLAITFFVVICLGTVTIAFVVKRALSPLQQ
EEEHHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIIKMKEVANNNFENNLPKPKTKDLEAVIDGINSMSAQIAQSFQSQAKEAEKLRDKVYLD
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
PISGLGNRTFFMGQLTNWLAESSKGGVALFKVNFINKVYEQDGYEAGDALVRELSDLLKA
CCCCCCCCEEEHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TLPASNVILTRINSSEFGFIFPNIEEDELKLAAENIVVYTQDIKGDPTATAPIDAELGVV
HCCCCCEEEEEECCCCCEEECCCCCHHHHHHEECCEEEEEECCCCCCCCCCCCCCCCCEE
FNETRKTTTEILSLADNALTLAHSNPQMPFGFIADESEHELMGKQQWKAFVDEAINEHLF
ECCHHHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
QFTLQLATTPNGTVFHQEVFSAIEKDEQRYSANQYLFALEQLNETTYFDQFVIRTMIERV
HHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SSGEITQPVAINLSNRSVDNPSFVRWLTTTLKKHKSIAPLFHFEIQESAFIENEDHTALL
CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCCCHHHH
CNVIRSSGAEFGVDNFGRNFESLEYIKLFRPNYVKLDYLFTHQLDDEKQRYILASISRTA
HHHHHHCCCCCCCHHHCCCCHHHHHHHEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHH
QNLGITTIASRVENKEQLDLLAEHNVDVFQGFFINEKVEGI
HHCCHHHHHHHHCCHHHHHHHHHCCCHHHHCEEECCCCCCC
>Mature Secondary Structure 
TLYKQLVAWMTAVFLILMISVFAIEFRNTQTFLENQQRSEVNNTINTVGLALAPYLEDE
CHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
DKVAAESVINALFDGSYYSAVRLTLFTTNEEVVRVYPVRIDTVPEWFTQLHLFRTISENR
HHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEEEEEECCHHHHHHHHHHHHHHCCCC
IITSGWLQLAEVEIVTHPGYAYQQLWNALIQLAITFFVVICLGTVTIAFVVKRALSPLQQ
EEEHHHHEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IIIKMKEVANNNFENNLPKPKTKDLEAVIDGINSMSAQIAQSFQSQAKEAEKLRDKVYLD
HHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEC
PISGLGNRTFFMGQLTNWLAESSKGGVALFKVNFINKVYEQDGYEAGDALVRELSDLLKA
CCCCCCCCEEEHHHHHHHHHHCCCCCEEEEEEHHHHHHHHHCCCCHHHHHHHHHHHHHHH
TLPASNVILTRINSSEFGFIFPNIEEDELKLAAENIVVYTQDIKGDPTATAPIDAELGVV
HCCCCCEEEEEECCCCCEEECCCCCHHHHHHEECCEEEEEECCCCCCCCCCCCCCCCCEE
FNETRKTTTEILSLADNALTLAHSNPQMPFGFIADESEHELMGKQQWKAFVDEAINEHLF
ECCHHHHHHHHHHHHCCCEEEECCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHH
QFTLQLATTPNGTVFHQEVFSAIEKDEQRYSANQYLFALEQLNETTYFDQFVIRTMIERV
HHHHHEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
SSGEITQPVAINLSNRSVDNPSFVRWLTTTLKKHKSIAPLFHFEIQESAFIENEDHTALL
CCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECHHHCCCCCCCHHHH
CNVIRSSGAEFGVDNFGRNFESLEYIKLFRPNYVKLDYLFTHQLDDEKQRYILASISRTA
HHHHHHCCCCCCCHHHCCCCHHHHHHHEECCCEEEEEEEEECCCCCHHHHHHHHHHHHHH
QNLGITTIASRVENKEQLDLLAEHNVDVFQGFFINEKVEGI
HHCCHHHHHHHHCCHHHHHHHHHCCCHHHHCEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]