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The map label for this gene is ydeH [H]

Identifier: 59714195

GI number: 59714195

Start: 1137803

End: 1138702

Strand: Reverse

Name: ydeH [H]

Synonym: VF_A1012

Alternate gene names: 59714195

Gene position: 1138702-1137803 (Counterclockwise)

Preceding gene: 59714197

Following gene: 59714193

Centisome position: 85.6

GC content: 34.56

Gene sequence:

>900_bases
ATGTTAACTGACCAAAAAATTTTAATTGCAGAAGATGAACCTGTGAGCCGTCTTGTACTGCAGCGGTTATTAAAGGCATT
CACATGTATTTCAGTTACAAATGGACAGGAAGCTCTTGATGTTATTCACCAAGAACGTATCGACTTGGTGTTATTGGATA
TTCATATGCCTATCATGGGAGGGTTTGAGGTAATAGAAAAACTTAAAAATAGTGAAACAACGAAAGACATTCCCATTATT
GTGATTACTGTGAATCAATCTACGGAAGATGAAATTCGTGCCTTAGATCTTGGTGCTGTTGATTTTGTAACTAAACCATT
TCACGCTGTTATTTTACAAAAACGTATTCGTAATCAGTTAGCGCTTAAGCTCAAATCGGATTTATTAGAAAAACATGCAT
CTTTAGATGGATTAACTAATTTGCTCAATCGTCGTATGTTTGATTTTGATTTAGAAAATCGATGGGCCGAAAGCCAACGA
TTACAGGCTAATTTTAGTTTAATCATGTTTGATATTGACCATTTTAAACTCTATAACGATAACTATGGACACTCTGCTGG
GGATGAGGTGCTTGTTAGAGTCGCGAAAGCGTTAATGAAAACCTTACAAAGAAAAACAGATAGAGTTTACCGATACGGTG
GAGAAGAGTTTATTTTAATTCAATTCGATACTGACCTTGAGCAATTAAGGCAAACAGCGGAATTACTACGTCAATGTATC
TATGATTTGAATATCACTCATGACTTTTCATTTCATAAAAGAATAAGTATTAGTGTTGGCGCTACTTTGATTAATGCAGA
ACAAATTCAGCCGATACCTTACCTGTTAGAAATTACGGATCAGCAGTTATATAAAGCAAAAAAACAAGGAAGAAATTGTG
TATCAACAATAACCATTTGA

Upstream 100 bases:

>100_bases
ATAAACAATAGGTTAAGATTTCTTTTTATGAATCACATTCTTTCTATGAAAATTATGGTATCAATAAAGCAGAGGTTCTT
ACTATGGAAGTTGGTGATGT

Downstream 100 bases:

>100_bases
TAAATGAAGGTTATTTGTTCAAATTTGCTTAAATTTAGTCACTTCGCTTTATTTTTAATCAAACGAACATTTTTTTTCAA
AAAACACTTGCGCCCGATCT

Product: two component response regulator protein

Products: NA

Alternate protein names: Bacteriophytochrome cph2 [H]

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MLTDQKILIAEDEPVSRLVLQRLLKAFTCISVTNGQEALDVIHQERIDLVLLDIHMPIMGGFEVIEKLKNSETTKDIPII
VITVNQSTEDEIRALDLGAVDFVTKPFHAVILQKRIRNQLALKLKSDLLEKHASLDGLTNLLNRRMFDFDLENRWAESQR
LQANFSLIMFDIDHFKLYNDNYGHSAGDEVLVRVAKALMKTLQRKTDRVYRYGGEEFILIQFDTDLEQLRQTAELLRQCI
YDLNITHDFSFHKRISISVGATLINAEQIQPIPYLLEITDQQLYKAKKQGRNCVSTITI

Sequences:

>Translated_299_residues
MLTDQKILIAEDEPVSRLVLQRLLKAFTCISVTNGQEALDVIHQERIDLVLLDIHMPIMGGFEVIEKLKNSETTKDIPII
VITVNQSTEDEIRALDLGAVDFVTKPFHAVILQKRIRNQLALKLKSDLLEKHASLDGLTNLLNRRMFDFDLENRWAESQR
LQANFSLIMFDIDHFKLYNDNYGHSAGDEVLVRVAKALMKTLQRKTDRVYRYGGEEFILIQFDTDLEQLRQTAELLRQCI
YDLNITHDFSFHKRISISVGATLINAEQIQPIPYLLEITDQQLYKAKKQGRNCVSTITI
>Mature_299_residues
MLTDQKILIAEDEPVSRLVLQRLLKAFTCISVTNGQEALDVIHQERIDLVLLDIHMPIMGGFEVIEKLKNSETTKDIPII
VITVNQSTEDEIRALDLGAVDFVTKPFHAVILQKRIRNQLALKLKSDLLEKHASLDGLTNLLNRRMFDFDLENRWAESQR
LQANFSLIMFDIDHFKLYNDNYGHSAGDEVLVRVAKALMKTLQRKTDRVYRYGGEEFILIQFDTDLEQLRQTAELLRQCI
YDLNITHDFSFHKRISISVGATLINAEQIQPIPYLLEITDQQLYKAKKQGRNCVSTITI

Specific function: Photoreceptor which exists in two forms that are reversibly interconvertible by light:the R form that absorbs maximally in the red region of the spectrum and the FR form that absorbs maximally in the far-red region [H]

COG id: COG3706

COG function: function code T; Response regulator containing a CheY-like receiver domain and a GGDEF domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 GGDEF domains [H]

Homologues:

Organism=Escherichia coli, GI87081881, Length=187, Percent_Identity=36.8983957219251, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI145693134, Length=186, Percent_Identity=32.7956989247312, Blast_Score=98, Evalue=6e-22,
Organism=Escherichia coli, GI1787262, Length=161, Percent_Identity=33.5403726708075, Blast_Score=90, Evalue=2e-19,
Organism=Escherichia coli, GI1786584, Length=164, Percent_Identity=34.7560975609756, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787816, Length=167, Percent_Identity=35.9281437125749, Blast_Score=87, Evalue=9e-19,
Organism=Escherichia coli, GI1787056, Length=163, Percent_Identity=33.7423312883436, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI87082007, Length=167, Percent_Identity=35.9281437125749, Blast_Score=77, Evalue=2e-15,
Organism=Escherichia coli, GI1788381, Length=167, Percent_Identity=32.3353293413174, Blast_Score=76, Evalue=3e-15,
Organism=Escherichia coli, GI1788956, Length=175, Percent_Identity=30.8571428571429, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786599, Length=115, Percent_Identity=33.9130434782609, Blast_Score=72, Evalue=5e-14,
Organism=Escherichia coli, GI87082012, Length=155, Percent_Identity=32.9032258064516, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI145693157, Length=105, Percent_Identity=31.4285714285714, Blast_Score=64, Evalue=1e-11,
Organism=Escherichia coli, GI1788550, Length=109, Percent_Identity=34.8623853211009, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1790552, Length=114, Percent_Identity=31.5789473684211, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI87081977, Length=179, Percent_Identity=29.0502793296089, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1788085, Length=168, Percent_Identity=29.7619047619048, Blast_Score=62, Evalue=5e-11,
Organism=Escherichia coli, GI1787802, Length=195, Percent_Identity=27.6923076923077, Blast_Score=61, Evalue=8e-11,
Organism=Escherichia coli, GI1787229, Length=116, Percent_Identity=32.7586206896552, Blast_Score=61, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR003018
- InterPro:   IPR016132
- InterPro:   IPR001294
- InterPro:   IPR013515 [H]

Pfam domain/function: PF00563 EAL; PF01590 GAF; PF00990 GGDEF; PF00360 Phytochrome [H]

EC number: NA

Molecular weight: Translated: 34454; Mature: 34454

Theoretical pI: Translated: 6.11; Mature: 6.11

Prosite motif: PS50110 RESPONSE_REGULATORY ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTDQKILIAEDEPVSRLVLQRLLKAFTCISVTNGQEALDVIHQERIDLVLLDIHMPIMG
CCCCCEEEEECCCCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCEEEEEECCCCCC
GFEVIEKLKNSETTKDIPIIVITVNQSTEDEIRALDLGAVDFVTKPFHAVILQKRIRNQL
CHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ALKLKSDLLEKHASLDGLTNLLNRRMFDFDLENRWAESQRLQANFSLIMFDIDHFKLYND
HHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECEEEEECC
NYGHSAGDEVLVRVAKALMKTLQRKTDRVYRYGGEEFILIQFDTDLEQLRQTAELLRQCI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHH
YDLNITHDFSFHKRISISVGATLINAEQIQPIPYLLEITDQQLYKAKKQGRNCVSTITI
HHCCCCCCCCCCEEEEEEECEEEECHHHCCCCCHHEEECHHHHHHHHHHCCCHHHEECC
>Mature Secondary Structure
MLTDQKILIAEDEPVSRLVLQRLLKAFTCISVTNGQEALDVIHQERIDLVLLDIHMPIMG
CCCCCEEEEECCCCHHHHHHHHHHHHHHHEEECCCHHHHHHHHHHCCCEEEEEECCCCCC
GFEVIEKLKNSETTKDIPIIVITVNQSTEDEIRALDLGAVDFVTKPFHAVILQKRIRNQL
CHHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH
ALKLKSDLLEKHASLDGLTNLLNRRMFDFDLENRWAESQRLQANFSLIMFDIDHFKLYND
HHHHHHHHHHHHHCHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCEEEEEEECEEEEECC
NYGHSAGDEVLVRVAKALMKTLQRKTDRVYRYGGEEFILIQFDTDLEQLRQTAELLRQCI
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHH
YDLNITHDFSFHKRISISVGATLINAEQIQPIPYLLEITDQQLYKAKKQGRNCVSTITI
HHCCCCCCCCCCEEEEEEECEEEECHHHCCCCCHHEEECHHHHHHHHHHCCCHHHEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8590279; 8905231; 10978170; 11063585 [H]