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The map label for this gene is yddU [C]

Identifier: 59714197

GI number: 59714197

Start: 1139269

End: 1140849

Strand: Reverse

Name: yddU [C]

Synonym: VF_A1014

Alternate gene names: 59714197

Gene position: 1140849-1139269 (Counterclockwise)

Preceding gene: 59714198

Following gene: 59714195

Centisome position: 85.76

GC content: 28.65

Gene sequence:

>1581_bases
ATGGATGATGGCGTTATTTTAAAATTGTTGTTGTTTGCTAATGTTGTTTCTTTAGTTTTGTTATCTAAAGGAATTTATGA
TCTTGTTAAGAATAATGAACTATCAAAGAGAATATTAACTTATATACTTTTATTCATATATTTTATTGGATTTGTATATA
TTGAAAATATGCTTTTAGAAAAGGGACTAAAAGACTATGTAGATATCTCGATGTTAATTAGTGTTACTTTTTTCACTCAA
TTAGCATTCATTTTTATTTTGATAACAAACAAGATAGCTAAAACGGTATCTAATAATGATGAAATAGAAGTCATAACTAA
TAAAGTAAAAATATATAAAACTCTTATTGAAGATAAAATTAATAATGGTGATTTATTTAACTTAACAAAGATTAAAATAC
AAAATTATAGAACACTAATTGAGTATTCATCGGATAAAACATTTAATAGCATTTTATCTTATGCATCCCTATTAGTTAAG
AAGCATCGTAATGATAGGAATGTGTCTATTTTTTACGATACTAATGAAATTATAATTATTGGAAATTTAACGAATAAGGA
CAAAATTAACAATATTGCTTTAGAGGTGTATGAACTACTCATTCAACCTATTAAAATGAAAGGTAAAAATTTCATATTAC
AGCCAATTATAGGTAATGTGATCTACTCGAATGATATTGATAATGCGGATGAAATGCTTAAACGAGTAGATATTGCTTGT
TACAAAGCGAAAAAACTGGGTTTAGTTATTGATTTTTATTCAGAAAATTATGCGCAATCTATTAATGATGAAGTCGATAT
TTTGAGTAAATTAGTTCATGCTATTCCGAATAAAGAATTTGAGCTTTATTATCAACCTATTGTAAATAGTATAGATAAAA
CTCTACATGGTTATGAAGCGCTGATCCGTTGGCCACAAAAAGATGGCAGTATGATCCCTCCAGATAAATTCATTTCAATT
GCTGAAAAAAACAATTATATCAAAGGCATCACTCAGTGGGTTGTGAGTCAAGTAGCTTCAGATATTATTCGATTAAAGAA
CGATAATTTAAACTTTCAAGTTCATATCAATATCTCCACATTGGACCTATATGATGATGATTTGTATAACCAATTATTTG
ATATGGTAGTAAATAAGCATCTTGAACCATCGAGTATGATTTTAGAAGTCACGGAAAGTGCGTTAATGTCTGATGTAGAT
GCAGCCTATTTGATGTTATCTAAATTGTCAGAGTTGGGTTTTTATATCAGTATTGATGATTTCGGTACAGGGTACTCCTC
TTTATCCTTGTTAAGAATATTGGCATTTAATCAAATTAAAATTGACCAATCATTTATTAGGAATATGGCTGTTGGTAATA
GTGACTATGCAATAGTGGCATCGACGATTTATCTTGCACATAGTTTGGGCTGTAATGTGGTAGCCGAAGGGGTAGAAGAT
GAACATTTGTTTGCTGAATTACAAGAATTAGGCTGTGATTATGTGCAGGGTTATTATATTAGTAAACCTCAAGATATTGA
TAGTATTATAAATTGGTCATTAAAGTTAATTGAAAGGGAAAAAATGTCAGCTATTGCTTAG

Upstream 100 bases:

>100_bases
TTGAATACTATTTTTAAGAAAAACAAATTGGATTTAGAAATAGCACTGGGTTGATATTGTTTCATATTTAATGTCATGGA
TATGTTGAGGTTGTATTTAT

Downstream 100 bases:

>100_bases
TATGACTGCTCAGTTATAAGTCATATGCGACTCTTCTCCCATATCGTTAAGAGGTATGGGAGAATTTATGCTAATCATTT
AAATAATCTGTCATTTGTTG

Product: EAL domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 526; Mature: 526

Protein sequence:

>526_residues
MDDGVILKLLLFANVVSLVLLSKGIYDLVKNNELSKRILTYILLFIYFIGFVYIENMLLEKGLKDYVDISMLISVTFFTQ
LAFIFILITNKIAKTVSNNDEIEVITNKVKIYKTLIEDKINNGDLFNLTKIKIQNYRTLIEYSSDKTFNSILSYASLLVK
KHRNDRNVSIFYDTNEIIIIGNLTNKDKINNIALEVYELLIQPIKMKGKNFILQPIIGNVIYSNDIDNADEMLKRVDIAC
YKAKKLGLVIDFYSENYAQSINDEVDILSKLVHAIPNKEFELYYQPIVNSIDKTLHGYEALIRWPQKDGSMIPPDKFISI
AEKNNYIKGITQWVVSQVASDIIRLKNDNLNFQVHINISTLDLYDDDLYNQLFDMVVNKHLEPSSMILEVTESALMSDVD
AAYLMLSKLSELGFYISIDDFGTGYSSLSLLRILAFNQIKIDQSFIRNMAVGNSDYAIVASTIYLAHSLGCNVVAEGVED
EHLFAELQELGCDYVQGYYISKPQDIDSIINWSLKLIEREKMSAIA

Sequences:

>Translated_526_residues
MDDGVILKLLLFANVVSLVLLSKGIYDLVKNNELSKRILTYILLFIYFIGFVYIENMLLEKGLKDYVDISMLISVTFFTQ
LAFIFILITNKIAKTVSNNDEIEVITNKVKIYKTLIEDKINNGDLFNLTKIKIQNYRTLIEYSSDKTFNSILSYASLLVK
KHRNDRNVSIFYDTNEIIIIGNLTNKDKINNIALEVYELLIQPIKMKGKNFILQPIIGNVIYSNDIDNADEMLKRVDIAC
YKAKKLGLVIDFYSENYAQSINDEVDILSKLVHAIPNKEFELYYQPIVNSIDKTLHGYEALIRWPQKDGSMIPPDKFISI
AEKNNYIKGITQWVVSQVASDIIRLKNDNLNFQVHINISTLDLYDDDLYNQLFDMVVNKHLEPSSMILEVTESALMSDVD
AAYLMLSKLSELGFYISIDDFGTGYSSLSLLRILAFNQIKIDQSFIRNMAVGNSDYAIVASTIYLAHSLGCNVVAEGVED
EHLFAELQELGCDYVQGYYISKPQDIDSIINWSLKLIEREKMSAIA
>Mature_526_residues
MDDGVILKLLLFANVVSLVLLSKGIYDLVKNNELSKRILTYILLFIYFIGFVYIENMLLEKGLKDYVDISMLISVTFFTQ
LAFIFILITNKIAKTVSNNDEIEVITNKVKIYKTLIEDKINNGDLFNLTKIKIQNYRTLIEYSSDKTFNSILSYASLLVK
KHRNDRNVSIFYDTNEIIIIGNLTNKDKINNIALEVYELLIQPIKMKGKNFILQPIIGNVIYSNDIDNADEMLKRVDIAC
YKAKKLGLVIDFYSENYAQSINDEVDILSKLVHAIPNKEFELYYQPIVNSIDKTLHGYEALIRWPQKDGSMIPPDKFISI
AEKNNYIKGITQWVVSQVASDIIRLKNDNLNFQVHINISTLDLYDDDLYNQLFDMVVNKHLEPSSMILEVTESALMSDVD
AAYLMLSKLSELGFYISIDDFGTGYSSLSLLRILAFNQIKIDQSFIRNMAVGNSDYAIVASTIYLAHSLGCNVVAEGVED
EHLFAELQELGCDYVQGYYISKPQDIDSIINWSLKLIEREKMSAIA

Specific function: Unknown

COG id: COG2200

COG function: function code T; FOG: EAL domain

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PAS (PER-ARNT-SIM) domain [H]

Homologues:

Organism=Escherichia coli, GI87081921, Length=327, Percent_Identity=30.5810397553517, Blast_Score=155, Evalue=4e-39,
Organism=Escherichia coli, GI1790496, Length=251, Percent_Identity=33.8645418326693, Blast_Score=149, Evalue=5e-37,
Organism=Escherichia coli, GI1787541, Length=346, Percent_Identity=26.0115606936416, Blast_Score=146, Evalue=4e-36,
Organism=Escherichia coli, GI1788849, Length=253, Percent_Identity=33.201581027668, Blast_Score=136, Evalue=4e-33,
Organism=Escherichia coli, GI87081743, Length=270, Percent_Identity=31.4814814814815, Blast_Score=131, Evalue=1e-31,
Organism=Escherichia coli, GI226510982, Length=295, Percent_Identity=27.4576271186441, Blast_Score=130, Evalue=2e-31,
Organism=Escherichia coli, GI87081845, Length=267, Percent_Identity=34.0823970037453, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788502, Length=244, Percent_Identity=30.7377049180328, Blast_Score=126, Evalue=3e-30,
Organism=Escherichia coli, GI87082096, Length=302, Percent_Identity=27.4834437086093, Blast_Score=122, Evalue=8e-29,
Organism=Escherichia coli, GI1787055, Length=253, Percent_Identity=33.596837944664, Blast_Score=114, Evalue=1e-26,
Organism=Escherichia coli, GI1786507, Length=246, Percent_Identity=29.6747967479675, Blast_Score=112, Evalue=7e-26,
Organism=Escherichia coli, GI87081980, Length=267, Percent_Identity=29.9625468164794, Blast_Score=108, Evalue=1e-24,
Organism=Escherichia coli, GI1787410, Length=223, Percent_Identity=23.7668161434978, Blast_Score=63, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001054
- InterPro:   IPR000160
- InterPro:   IPR001633
- InterPro:   IPR005330
- InterPro:   IPR000014
- InterPro:   IPR013767 [H]

Pfam domain/function: PF00563 EAL; PF00990 GGDEF; PF03707 MHYT; PF00989 PAS [H]

EC number: NA

Molecular weight: Translated: 60088; Mature: 60088

Theoretical pI: Translated: 4.74; Mature: 4.74

Prosite motif: PS50883 EAL ; PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDDGVILKLLLFANVVSLVLLSKGIYDLVKNNELSKRILTYILLFIYFIGFVYIENMLLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGLKDYVDISMLISVTFFTQLAFIFILITNKIAKTVSNNDEIEVITNKVKIYKTLIEDKI
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCC
NNGDLFNLTKIKIQNYRTLIEYSSDKTFNSILSYASLLVKKHRNDRNVSIFYDTNEIIII
CCCCEEEEEEEEEHHHHEEEHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEE
GNLTNKDKINNIALEVYELLIQPIKMKGKNFILQPIIGNVIYSNDIDNADEMLKRVDIAC
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCEEECCCCCCHHHHHHHHHHHH
YKAKKLGLVIDFYSENYAQSINDEVDILSKLVHAIPNKEFELYYQPIVNSIDKTLHGYEA
HHHHHCCEEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHH
LIRWPQKDGSMIPPDKFISIAEKNNYIKGITQWVVSQVASDIIRLKNDNLNFQVHINIST
HHCCCCCCCCCCCHHHHEEEHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
LDLYDDDLYNQLFDMVVNKHLEPSSMILEVTESALMSDVDAAYLMLSKLSELGFYISIDD
EECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
FGTGYSSLSLLRILAFNQIKIDQSFIRNMAVGNSDYAIVASTIYLAHSLGCNVVAEGVED
CCCCHHHHHHHHHHHHHHHEECHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHEECCCCH
EHLFAELQELGCDYVQGYYISKPQDIDSIINWSLKLIEREKMSAIA
HHHHHHHHHCCCHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MDDGVILKLLLFANVVSLVLLSKGIYDLVKNNELSKRILTYILLFIYFIGFVYIENMLLE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
KGLKDYVDISMLISVTFFTQLAFIFILITNKIAKTVSNNDEIEVITNKVKIYKTLIEDKI
HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHCC
NNGDLFNLTKIKIQNYRTLIEYSSDKTFNSILSYASLLVKKHRNDRNVSIFYDTNEIIII
CCCCEEEEEEEEEHHHHEEEHCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCEEEE
GNLTNKDKINNIALEVYELLIQPIKMKGKNFILQPIIGNVIYSNDIDNADEMLKRVDIAC
ECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCEEECCCCCCHHHHHHHHHHHH
YKAKKLGLVIDFYSENYAQSINDEVDILSKLVHAIPNKEFELYYQPIVNSIDKTLHGYEA
HHHHHCCEEEEECCCHHHHHCCHHHHHHHHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHH
LIRWPQKDGSMIPPDKFISIAEKNNYIKGITQWVVSQVASDIIRLKNDNLNFQVHINIST
HHCCCCCCCCCCCHHHHEEEHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEE
LDLYDDDLYNQLFDMVVNKHLEPSSMILEVTESALMSDVDAAYLMLSKLSELGFYISIDD
EECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEC
FGTGYSSLSLLRILAFNQIKIDQSFIRNMAVGNSDYAIVASTIYLAHSLGCNVVAEGVED
CCCCHHHHHHHHHHHHHHHEECHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHEECCCCH
EHLFAELQELGCDYVQGYYISKPQDIDSIINWSLKLIEREKMSAIA
HHHHHHHHHCCCHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11259647 [H]