| Definition | Vibrio fischeri ES114 chromosome chromosome II, complete sequence. |
|---|---|
| Accession | NC_006841 |
| Length | 1,330,333 |
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The map label for this gene is chb [H]
Identifier: 59714193
GI number: 59714193
Start: 1133541
End: 1136201
Strand: Reverse
Name: chb [H]
Synonym: VF_A1010
Alternate gene names: 59714193
Gene position: 1136201-1133541 (Counterclockwise)
Preceding gene: 59714195
Following gene: 59714189
Centisome position: 85.41
GC content: 41.94
Gene sequence:
>2661_bases ATGGAATTGTATATCATGTTTAAGAAAACGCTTTTATCAACCCTAATACTAGCTGGCCTAGCAGGCTGTTCATCAACATC ATCTGAGCAGTCAGCGGTTAATCAACTAGCTGAAAACCTAGATATTAACTACACAGTTATTACAAACCAAGGTGCTGATG ACGGTCTTGCATGTAAAGAGCTTCAAGCTGAATGGGCATCATGTAACAAAGTAAACATGACGTTAACTAATACAGGTGAA GCTATTGATTCAAAAGATTGGACAATTTATTTCCACAGCATCCGTTTAATTTTAGATGTTGAAAACGACCAATTTAAAAT TACTCGCGTAACGGGTGATTTGCATAAACTTGAACCAACTGAAAAGTTTGATGGTTTTGCGGCAGGTGAAGAAGTGGTTA TTCCACTGATCGCTGAATACTGGCAATTATTTGAAACTGACTTTATGCCGGGTGCATTTGTAACGGCTCCAGGTGCAGAA GCTCGTAATATCATTTCTTTAGATACAGAAGATACAGGCGAATACGTAGATGAAATCATCGGTGTTCAACTAAAACGTAC TCTTGCTGATAATAACGTTGTAGCAACAGCAAACACACGTTTTGAGAAGAACGCCGATGTTGTTGAAGAGAATGTGGCAG GTCACATTATTCCAACACCATTAAAAACAACACTAACGAACAAAACGGTAGATTTAGCTAAAGGTATCTCTATTACTGCA AACGGAATTGATGCTGACCAACTTGCAGCGTTAAATCAACGTGCAGAACTACTTGGCCTTGAAACTGCGGGTGAGTACCC AGTATCAGTTTCTGTTGATAAGAAACAATTTAAAGACGGTGTATCTGGTGCATACAAACTAGATGTGACTGAAGGTAAAG CAACGGTTGTAGCATTTGACCAAGCGGGCGCATTCTACGGCGTACAATCTTTACTTGCTCTAGTAAGTTTAGATAACTCA GAAATCCCAACGTTAAACGTAGAAGATGCTCCACGTTTTGAATACCGTGGTGTAATGGTTGACGTAGCTCGTAACTTCCA CTCAAAAGAAGCGATTCTAGCAACTGTTGATCAAATGGCGGCATACAAGCTGAACAAACTACACCTTCACTTAACTGATG ATGAAGGTTGGCGTTTAGAGATCCCTGGTCTTCCTGAGCTAACGGATATTGGTGGTAATCGTTGTTTTGATGAGACAGAA ACCTCTTGTCTATTACCTCAACTAGGTTCTGGTGCTGATTCAGATAACTTTGGTTCTGGCTACTTCACAACAGAAGATTA CCTAGAAATCTTAACTTACGCGAAAAACCGTAACATTGAAGTGATTCCAGAAATCGATATGCCAGCCCACTCACGTGCAG CAGTTATGTCAATGGAAGCGCGTTACGCACGTCTTGCTGCTGAAGGTAAGATGGAAGAAGCGAATCAATACCGTCTGATG GATCCAAAAGATGAATCAAACGTAACTACGGTTCAGTTCTACAACAAACAAAGTTTTATCAACCCATGTCTAGATTCATC TGCAACGTTTGTAGATAAAGTAATCACAGAAGTTGCAGCAATGCATAAAGCGGCAGGTGTTCCTCTATCAACATGGCACT TCGGTGGTGATGAAGCGAAAAACATCAAACTTCACGCTGGTTTCCAAGACATCAACGATGAAGAGAAAATTGCATGGAAA GGAGATTTAGATCTATCTAAACAAGATTTCCCATTTGCAAAATCGCCACAGTGTCAGTCTCTGATCGCAAGCGGTGAAGT TGCTGATTTCGAACATTTACCAAGCCACTTCGCAGAGCAAGTATCTAAGATCGTTGCTAAGCAAGGTATCCCACACTTCC AAGCATGGCAAGATGGCCTAAAACACTCTGAAGATGCAGGCGCATTCGCAACGGAATCAGTACGTGCTAACTTCTGGGAC ACATTGTACTGGGGCGGTGGTGCTTCAGCTTACGAATGGGCTGAAAAAGGTTACGACGTAGTTATCTCTAACCCAGATTA CGTTTACATGGACTTCCCATACGAAGTGGATGCAAAAGAGCGTGGTTACTACTGGGCAACACGTGCAACAGACACTCGTA AGATGTTTGGTTTTGCACCAGAAAACCTACCTCAAAATGCGGAAACATCAGTAGACCGTGACGGTAATGGCTTTGAAAGT GCGGGTACAGTAACACCTAAGAAACCTTTCTACGGTCTATCTGCTCAACTTTGGTCTGAAACAGTACGTACTGATGAGCA ATATGAATACATGGTGTTCCCACGTGTTATTGCAGCGGCTGAGCGTGCATGGCATGAAGCATCTTGGGAAAATGAATACA AAGCAGGTGTTAAGTACTCTCTACAAACAAACCTAGTAGATAAGAAAGCACAATTAGCTGATTGGACTAAGTTTGCAAAC ACAATGGGTCAACGTGAATTAGCTAAGCTTGAAAGAGCGGGCATTGATTACCGTCTACCAATCCCAGGTGCAGAAATTGC GAACGGTGAGCTAAGCATGAACATTTCATTCCCAGGCGTAACGCTACAATACTCTGTAGATGGCGGTAAAACATGGGCTG AATACGACAATGCAAACAAACCAAAAGTAACTGGTGACGTTCAAATTCGTTCAGCATCATTTACTGGTGAGCGTGTTAGC CGTGTAACTAGCGTTAAGTAA
Upstream 100 bases:
>100_bases AAAATAAGTGTGATTTAGAGCAAAATTGCGAATTTACTTAATTTGTAAAGTCAAAAAAGTTTCGTATTGTAATTCCAGAT TCGAAATTAAATTACTCATA
Downstream 100 bases:
>100_bases TTTACATTAGAAACATAAATTCAGTCATTAAATAATCAAACGGCACTTCTATTATAGAAGTGCCGTTTTTTTATTGGCTT ATATAAACAAATATATTATG
Product: beta-hexosaminidase
Products: NA
Alternate protein names: Chitobiase; Beta-N-acetylhexosaminidase; N-acetyl-beta-glucosaminidase [H]
Number of amino acids: Translated: 886; Mature: 886
Protein sequence:
>886_residues MELYIMFKKTLLSTLILAGLAGCSSTSSEQSAVNQLAENLDINYTVITNQGADDGLACKELQAEWASCNKVNMTLTNTGE AIDSKDWTIYFHSIRLILDVENDQFKITRVTGDLHKLEPTEKFDGFAAGEEVVIPLIAEYWQLFETDFMPGAFVTAPGAE ARNIISLDTEDTGEYVDEIIGVQLKRTLADNNVVATANTRFEKNADVVEENVAGHIIPTPLKTTLTNKTVDLAKGISITA NGIDADQLAALNQRAELLGLETAGEYPVSVSVDKKQFKDGVSGAYKLDVTEGKATVVAFDQAGAFYGVQSLLALVSLDNS EIPTLNVEDAPRFEYRGVMVDVARNFHSKEAILATVDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTDIGGNRCFDETE TSCLLPQLGSGADSDNFGSGYFTTEDYLEILTYAKNRNIEVIPEIDMPAHSRAAVMSMEARYARLAAEGKMEEANQYRLM DPKDESNVTTVQFYNKQSFINPCLDSSATFVDKVITEVAAMHKAAGVPLSTWHFGGDEAKNIKLHAGFQDINDEEKIAWK GDLDLSKQDFPFAKSPQCQSLIASGEVADFEHLPSHFAEQVSKIVAKQGIPHFQAWQDGLKHSEDAGAFATESVRANFWD TLYWGGGASAYEWAEKGYDVVISNPDYVYMDFPYEVDAKERGYYWATRATDTRKMFGFAPENLPQNAETSVDRDGNGFES AGTVTPKKPFYGLSAQLWSETVRTDEQYEYMVFPRVIAAAERAWHEASWENEYKAGVKYSLQTNLVDKKAQLADWTKFAN TMGQRELAKLERAGIDYRLPIPGAEIANGELSMNISFPGVTLQYSVDGGKTWAEYDNANKPKVTGDVQIRSASFTGERVS RVTSVK
Sequences:
>Translated_886_residues MELYIMFKKTLLSTLILAGLAGCSSTSSEQSAVNQLAENLDINYTVITNQGADDGLACKELQAEWASCNKVNMTLTNTGE AIDSKDWTIYFHSIRLILDVENDQFKITRVTGDLHKLEPTEKFDGFAAGEEVVIPLIAEYWQLFETDFMPGAFVTAPGAE ARNIISLDTEDTGEYVDEIIGVQLKRTLADNNVVATANTRFEKNADVVEENVAGHIIPTPLKTTLTNKTVDLAKGISITA NGIDADQLAALNQRAELLGLETAGEYPVSVSVDKKQFKDGVSGAYKLDVTEGKATVVAFDQAGAFYGVQSLLALVSLDNS EIPTLNVEDAPRFEYRGVMVDVARNFHSKEAILATVDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTDIGGNRCFDETE TSCLLPQLGSGADSDNFGSGYFTTEDYLEILTYAKNRNIEVIPEIDMPAHSRAAVMSMEARYARLAAEGKMEEANQYRLM DPKDESNVTTVQFYNKQSFINPCLDSSATFVDKVITEVAAMHKAAGVPLSTWHFGGDEAKNIKLHAGFQDINDEEKIAWK GDLDLSKQDFPFAKSPQCQSLIASGEVADFEHLPSHFAEQVSKIVAKQGIPHFQAWQDGLKHSEDAGAFATESVRANFWD TLYWGGGASAYEWAEKGYDVVISNPDYVYMDFPYEVDAKERGYYWATRATDTRKMFGFAPENLPQNAETSVDRDGNGFES AGTVTPKKPFYGLSAQLWSETVRTDEQYEYMVFPRVIAAAERAWHEASWENEYKAGVKYSLQTNLVDKKAQLADWTKFAN TMGQRELAKLERAGIDYRLPIPGAEIANGELSMNISFPGVTLQYSVDGGKTWAEYDNANKPKVTGDVQIRSASFTGERVS RVTSVK >Mature_886_residues MELYIMFKKTLLSTLILAGLAGCSSTSSEQSAVNQLAENLDINYTVITNQGADDGLACKELQAEWASCNKVNMTLTNTGE AIDSKDWTIYFHSIRLILDVENDQFKITRVTGDLHKLEPTEKFDGFAAGEEVVIPLIAEYWQLFETDFMPGAFVTAPGAE ARNIISLDTEDTGEYVDEIIGVQLKRTLADNNVVATANTRFEKNADVVEENVAGHIIPTPLKTTLTNKTVDLAKGISITA NGIDADQLAALNQRAELLGLETAGEYPVSVSVDKKQFKDGVSGAYKLDVTEGKATVVAFDQAGAFYGVQSLLALVSLDNS EIPTLNVEDAPRFEYRGVMVDVARNFHSKEAILATVDQMAAYKLNKLHLHLTDDEGWRLEIPGLPELTDIGGNRCFDETE TSCLLPQLGSGADSDNFGSGYFTTEDYLEILTYAKNRNIEVIPEIDMPAHSRAAVMSMEARYARLAAEGKMEEANQYRLM DPKDESNVTTVQFYNKQSFINPCLDSSATFVDKVITEVAAMHKAAGVPLSTWHFGGDEAKNIKLHAGFQDINDEEKIAWK GDLDLSKQDFPFAKSPQCQSLIASGEVADFEHLPSHFAEQVSKIVAKQGIPHFQAWQDGLKHSEDAGAFATESVRANFWD TLYWGGGASAYEWAEKGYDVVISNPDYVYMDFPYEVDAKERGYYWATRATDTRKMFGFAPENLPQNAETSVDRDGNGFES AGTVTPKKPFYGLSAQLWSETVRTDEQYEYMVFPRVIAAAERAWHEASWENEYKAGVKYSLQTNLVDKKAQLADWTKFAN TMGQRELAKLERAGIDYRLPIPGAEIANGELSMNISFPGVTLQYSVDGGKTWAEYDNANKPKVTGDVQIRSASFTGERVS RVTSVK
Specific function: Hydrolysis of terminal, non-reducing N-acetyl-beta-D- glucosamine residues in chitobiose and higher analogs, and in glycoproteins [H]
COG id: COG3525
COG function: function code G; N-acetyl-beta-hexosaminidase
Gene ontology:
Cell location: Cell outer membrane; Lipid-anchor [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the glycosyl hydrolase 20 family [H]
Homologues:
Organism=Homo sapiens, GI4504373, Length=493, Percent_Identity=24.3407707910751, Blast_Score=93, Evalue=1e-18, Organism=Homo sapiens, GI189181666, Length=337, Percent_Identity=23.7388724035608, Blast_Score=79, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17569815, Length=269, Percent_Identity=28.996282527881, Blast_Score=86, Evalue=1e-16, Organism=Drosophila melanogaster, GI24657468, Length=506, Percent_Identity=22.5296442687747, Blast_Score=88, Evalue=3e-17, Organism=Drosophila melanogaster, GI17647501, Length=506, Percent_Identity=22.5296442687747, Blast_Score=88, Evalue=3e-17, Organism=Drosophila melanogaster, GI281365639, Length=506, Percent_Identity=22.5296442687747, Blast_Score=88, Evalue=3e-17, Organism=Drosophila melanogaster, GI24657474, Length=506, Percent_Identity=22.5296442687747, Blast_Score=88, Evalue=3e-17, Organism=Drosophila melanogaster, GI24653074, Length=495, Percent_Identity=24.040404040404, Blast_Score=87, Evalue=6e-17, Organism=Drosophila melanogaster, GI45551090, Length=489, Percent_Identity=23.9263803680982, Blast_Score=86, Evalue=9e-17, Organism=Drosophila melanogaster, GI17933586, Length=240, Percent_Identity=28.75, Blast_Score=85, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015882 - InterPro: IPR008965 - InterPro: IPR004866 - InterPro: IPR012291 - InterPro: IPR013812 - InterPro: IPR001540 - InterPro: IPR004867 - InterPro: IPR015883 - InterPro: IPR017853 - InterPro: IPR013781 - InterPro: IPR014756 [H]
Pfam domain/function: PF03173 CHB_HEX; PF03174 CHB_HEX_C; PF00728 Glyco_hydro_20; PF02838 Glyco_hydro_20b [H]
EC number: =3.2.1.52 [H]
Molecular weight: Translated: 97967; Mature: 97967
Theoretical pI: Translated: 4.43; Mature: 4.43
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MELYIMFKKTLLSTLILAGLAGCSSTSSEQSAVNQLAENLDINYTVITNQGADDGLACKE CEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHH LQAEWASCNKVNMTLTNTGEAIDSKDWTIYFHSIRLILDVENDQFKITRVTGDLHKLEPT HHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCHHHCCCC EKFDGFAAGEEVVIPLIAEYWQLFETDFMPGAFVTAPGAEARNIISLDTEDTGEYVDEII HHCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHH GVQLKRTLADNNVVATANTRFEKNADVVEENVAGHIIPTPLKTTLTNKTVDLAKGISITA HHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCCCCEECCCCHHHHCCCHHHHHCCCEEEE NGIDADQLAALNQRAELLGLETAGEYPVSVSVDKKQFKDGVSGAYKLDVTEGKATVVAFD CCCCHHHHHHHHHHHHEEEECCCCCCCEEEEECHHHHHCCCCCEEEEEEECCCEEEEEEE QAGAFYGVQSLLALVSLDNSEIPTLNVEDAPRFEYRGVMVDVARNFHSKEAILATVDQMA CCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEHHHCCCCCHHHHHHHHHHH AYKLNKLHLHLTDDEGWRLEIPGLPELTDIGGNRCFDETETSCLLPQLGSGADSDNFGSG HHEEEEEEEEEECCCCCEEECCCCCCHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC YFTTEDYLEILTYAKNRNIEVIPEIDMPAHSRAAVMSMEARYARLAAEGKMEEANQYRLM CCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEC DPKDESNVTTVQFYNKQSFINPCLDSSATFVDKVITEVAAMHKAAGVPLSTWHFGGDEAK CCCCCCCEEEEEEECCHHHHCHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC NIKLHAGFQDINDEEKIAWKGDLDLSKQDFPFAKSPQCQSLIASGEVADFEHLPSHFAEQ EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHH VSKIVAKQGIPHFQAWQDGLKHSEDAGAFATESVRANFWDTLYWGGGASAYEWAEKGYDV HHHHHHHCCCCCHHHHHHHHCCCCCCCCEEHHHHHCCCCCEEEECCCCCHHHHHHCCCEE VISNPDYVYMDFPYEVDAKERGYYWATRATDTRKMFGFAPENLPQNAETSVDRDGNGFES EECCCCEEEEECCEECCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC AGTVTPKKPFYGLSAQLWSETVRTDEQYEYMVFPRVIAAAERAWHEASWENEYKAGVKYS CCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEE LQTNLVDKKAQLADWTKFANTMGQRELAKLERAGIDYRLPIPGAEIANGELSMNISFPGV EECCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEEECCCE TLQYSVDGGKTWAEYDNANKPKVTGDVQIRSASFTGERVSRVTSVK EEEEECCCCCEEHHCCCCCCCEEEEEEEEEEECCCHHHHHHHHCCC >Mature Secondary Structure MELYIMFKKTLLSTLILAGLAGCSSTSSEQSAVNQLAENLDINYTVITNQGADDGLACKE CEEEEEEHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCCHHHH LQAEWASCNKVNMTLTNTGEAIDSKDWTIYFHSIRLILDVENDQFKITRVTGDLHKLEPT HHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEEEEEEEEECCCCEEEEEEECCHHHCCCC EKFDGFAAGEEVVIPLIAEYWQLFETDFMPGAFVTAPGAEARNIISLDTEDTGEYVDEII HHCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCEEECCCCCCCCEEEECCCCHHHHHHHHH GVQLKRTLADNNVVATANTRFEKNADVVEENVAGHIIPTPLKTTLTNKTVDLAKGISITA HHHHHHHHCCCCEEEEECCCCCCCCHHHHHCCCCCEECCCCHHHHCCCHHHHHCCCEEEE NGIDADQLAALNQRAELLGLETAGEYPVSVSVDKKQFKDGVSGAYKLDVTEGKATVVAFD CCCCHHHHHHHHHHHHEEEECCCCCCCEEEEECHHHHHCCCCCEEEEEEECCCEEEEEEE QAGAFYGVQSLLALVSLDNSEIPTLNVEDAPRFEYRGVMVDVARNFHSKEAILATVDQMA CCCCHHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCCEEEEHHHCCCCCHHHHHHHHHHH AYKLNKLHLHLTDDEGWRLEIPGLPELTDIGGNRCFDETETSCLLPQLGSGADSDNFGSG HHEEEEEEEEEECCCCCEEECCCCCCHHHCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC YFTTEDYLEILTYAKNRNIEVIPEIDMPAHSRAAVMSMEARYARLAAEGKMEEANQYRLM CCCHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEC DPKDESNVTTVQFYNKQSFINPCLDSSATFVDKVITEVAAMHKAAGVPLSTWHFGGDEAK CCCCCCCEEEEEEECCHHHHCHHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCC NIKLHAGFQDINDEEKIAWKGDLDLSKQDFPFAKSPQCQSLIASGEVADFEHLPSHFAEQ EEEEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCHHHHHHCCCCCCHHHHHHHHHHH VSKIVAKQGIPHFQAWQDGLKHSEDAGAFATESVRANFWDTLYWGGGASAYEWAEKGYDV HHHHHHHCCCCCHHHHHHHHCCCCCCCCEEHHHHHCCCCCEEEECCCCCHHHHHHCCCEE VISNPDYVYMDFPYEVDAKERGYYWATRATDTRKMFGFAPENLPQNAETSVDRDGNGFES EECCCCEEEEECCEECCCCCCCEEEEECCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCCC AGTVTPKKPFYGLSAQLWSETVRTDEQYEYMVFPRVIAAAERAWHEASWENEYKAGVKYS CCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHCCCCCCCCCCEEEE LQTNLVDKKAQLADWTKFANTMGQRELAKLERAGIDYRLPIPGAEIANGELSMNISFPGV EECCCHHHHHHHHHHHHHHHHHCHHHHHHHHHCCCCEECCCCCCCCCCCEEEEEEECCCE TLQYSVDGGKTWAEYDNANKPKVTGDVQIRSASFTGERVSRVTSVK EEEEECCCCCEEHHCCCCCCCEEEEEEEEEEECCCHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 2670926 [H]