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The map label for this gene is lumQ [H]

Identifier: 59714016

GI number: 59714016

Start: 937098

End: 937880

Strand: Reverse

Name: lumQ [H]

Synonym: VF_A0833

Alternate gene names: 59714016

Gene position: 937880-937098 (Counterclockwise)

Preceding gene: 59714020

Following gene: 172087817

Centisome position: 70.5

GC content: 32.44

Gene sequence:

>783_bases
ATGATGGAAATTGACTGGATTTCACCAACCCAAATCATAATGTTGCCGGAAGAAAGAGAACTGCATTCTCATCACTATCA
TCAATTAGTGATAGGTTTGAAAGGGCAAGCTGAGTTTGAAATAAATAATAATTTAAGTGTTATTTATGCTGGTAAAGTGG
CAGTTATTCCGGCGAATCAAGAGCATGCTTTTTTAAGTTTGTATCAATCAGAAATATTAGTCCTTAATTTTCCTCAGTTT
TTTACTGATGATGAATTAGCATCAAGAGTTAAAAAATTGTTTAGTAAAATGGGCTATTATCAGCTTGACAGTCAAATTCA
GCACTTAATTCAATTATTGGTATGTGAAATACAATCAAATATTGACGATCATTTATTAAGCAGAACATGCAGTAACACGA
TAATTTCCCTGTTAGAGCGTCATTTAATTGATGAAAATTCAGCAAAAAAAATAAAACGTTTAAATCCAGATGTGATCGAC
AATTTTATAACACTACATCTCGGAACTAAGATCACAATTGCACAGTTAGCAAGCACTGTTTTTTTAGGAGAGAGTCAATT
TTATGCCATTTTTAAGCAAGAATTTGGTTTAACACCACATCAGTATATCGTTACAAAGCGTATTGAGTACTCAAAGAAAT
TATTAAGAGAAAGTACCCTTACTGTAGGTGAAATTGCACAACAAGCAGGTTTTGCTAATCAAAGTGCTTTTAGCCATGCT
TTTATGAAAAAAGTGGGAGATTCTCCCAGTCACTACCGTAATATGAACTTTATTCGTAATTAA

Upstream 100 bases:

>100_bases
TTAATCATGATCATGCTTTCATGTAGTGGTTATAGATAGATTGTTTTTATGATCTTGGTTAAACTGAATTTAAATCAGAT
TAGATGAGTTAAATGGATTG

Downstream 100 bases:

>100_bases
AAATTACTGCTTTTGTTCTCATTTTGTAACCGTATGGATGATTTAACAATTAAATCGGAGGTTTTGACAAGTATTCAGAC
TAAATAGAAAATAGAATCTT

Product: AraC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 260; Mature: 260

Protein sequence:

>260_residues
MMEIDWISPTQIIMLPEERELHSHHYHQLVIGLKGQAEFEINNNLSVIYAGKVAVIPANQEHAFLSLYQSEILVLNFPQF
FTDDELASRVKKLFSKMGYYQLDSQIQHLIQLLVCEIQSNIDDHLLSRTCSNTIISLLERHLIDENSAKKIKRLNPDVID
NFITLHLGTKITIAQLASTVFLGESQFYAIFKQEFGLTPHQYIVTKRIEYSKKLLRESTLTVGEIAQQAGFANQSAFSHA
FMKKVGDSPSHYRNMNFIRN

Sequences:

>Translated_260_residues
MMEIDWISPTQIIMLPEERELHSHHYHQLVIGLKGQAEFEINNNLSVIYAGKVAVIPANQEHAFLSLYQSEILVLNFPQF
FTDDELASRVKKLFSKMGYYQLDSQIQHLIQLLVCEIQSNIDDHLLSRTCSNTIISLLERHLIDENSAKKIKRLNPDVID
NFITLHLGTKITIAQLASTVFLGESQFYAIFKQEFGLTPHQYIVTKRIEYSKKLLRESTLTVGEIAQQAGFANQSAFSHA
FMKKVGDSPSHYRNMNFIRN
>Mature_260_residues
MMEIDWISPTQIIMLPEERELHSHHYHQLVIGLKGQAEFEINNNLSVIYAGKVAVIPANQEHAFLSLYQSEILVLNFPQF
FTDDELASRVKKLFSKMGYYQLDSQIQHLIQLLVCEIQSNIDDHLLSRTCSNTIISLLERHLIDENSAKKIKRLNPDVID
NFITLHLGTKITIAQLASTVFLGESQFYAIFKQEFGLTPHQYIVTKRIEYSKKLLRESTLTVGEIAQQAGFANQSAFSHA
FMKKVGDSPSHYRNMNFIRN

Specific function: Probable transcriptional regulator. Its target gene(s) is not yet known [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH araC/xylS-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI171474011, Length=254, Percent_Identity=21.259842519685, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013096
- InterPro:   IPR011051
- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR018062
- InterPro:   IPR020449
- InterPro:   IPR018060
- InterPro:   IPR014710 [H]

Pfam domain/function: PF07883 Cupin_2; PF00165 HTH_AraC [H]

EC number: NA

Molecular weight: Translated: 29870; Mature: 29870

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: PS01124 HTH_ARAC_FAMILY_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMEIDWISPTQIIMLPEERELHSHHYHQLVIGLKGQAEFEINNNLSVIYAGKVAVIPANQ
CCEECCCCCCEEEECCCHHHHHHHHHHEEEEEECCCEEEEECCCEEEEEECEEEEEECCC
EHAFLSLYQSEILVLNFPQFFTDDELASRVKKLFSKMGYYQLDSQIQHLIQLLVCEIQSN
CHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
IDDHLLSRTCSNTIISLLERHLIDENSAKKIKRLNPDVIDNFITLHLGTKITIAQLASTV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHEEEEEECCEEEHHHHHHHH
FLGESQFYAIFKQEFGLTPHQYIVTKRIEYSKKLLRESTLTVGEIAQQAGFANQSAFSHA
HCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHH
FMKKVGDSPSHYRNMNFIRN
HHHHHCCCHHHHCCCHHCCC
>Mature Secondary Structure
MMEIDWISPTQIIMLPEERELHSHHYHQLVIGLKGQAEFEINNNLSVIYAGKVAVIPANQ
CCEECCCCCCEEEECCCHHHHHHHHHHEEEEEECCCEEEEECCCEEEEEECEEEEEECCC
EHAFLSLYQSEILVLNFPQFFTDDELASRVKKLFSKMGYYQLDSQIQHLIQLLVCEIQSN
CHHHHHHHHCCEEEEECCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCC
IDDHLLSRTCSNTIISLLERHLIDENSAKKIKRLNPDVIDNFITLHLGTKITIAQLASTV
HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCHHHHHHEEEEEECCEEEHHHHHHHH
FLGESQFYAIFKQEFGLTPHQYIVTKRIEYSKKLLRESTLTVGEIAQQAGFANQSAFSHA
HCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCHHHHHHH
FMKKVGDSPSHYRNMNFIRN
HHHHHCCCHHHHCCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7503752 [H]