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The map label for this gene is ygcF [H]

Identifier: 59713678

GI number: 59713678

Start: 570044

End: 570724

Strand: Reverse

Name: ygcF [H]

Synonym: VF_A0495

Alternate gene names: 59713678

Gene position: 570724-570044 (Counterclockwise)

Preceding gene: 59713680

Following gene: 59713677

Centisome position: 42.9

GC content: 39.79

Gene sequence:

>681_bases
ATGTCAGCACCATTATTTAAAATTAACGAGTTATTCGAGACCATTCAAGGCGAAGGAACATTTACCGGTGTTCCATCTAT
ATTTTTACGCTTACAAGGTTGCCCTGTTGGTTGTTCTTGGTGTGATACAAAGCAAACTTGGGATGTTGAATTAAGTGATA
AAACAGATTTACAGACCATTTTAGCCAAAACGGAAGATACCCCTAGTTGGACGGAACTGTCGAGCACTCAAATAATTGAA
ATGTTGGAAAATCAAGGTTATACCGCAAAGCACATGGTGATTACTGGTGGTGAACCATGTATGTATGATCTGACTTCATT
GACTCAAGAACTAGAGCAACACGGTTATCGCTGCCAGATAGAAACCAGTGGCACTTACCCTATTCTTGCTTCAGACGACA
CTTGGGTGACAGTGTCACCAAAAATCAACATGAAAGGCAAATTACCAGTTCTGCCAGTCGCCCTATCTCGTGCAAATGAG
ATTAAACATCCAGTTGGTACAACAAAAGATATTGAACAACTTGATGCATTATTAGAAGGTGTTGAGTTACTCGAAGATGT
CACTATCGCTCTTCAGCCAATTAGCCAAAAACCAAGAGCTACCGAACTTTGTATTGAAACGTGTATCAAAAGAAATTGGC
GACTTTCTATTCAAACGCACAAATATTTAGCGATTGCGTGA

Upstream 100 bases:

>100_bases
TGATATCTATCACGAAGATTATGAAATATTTACGAAAAATGCGACTTCACAACGAATTTTAACGCCAAATTTTATAGTTT
TTTATTTGAGTAAAATAATT

Downstream 100 bases:

>100_bases
GAATTTTTTACATTTACCCTGTTTGAGTCATGGTATTGTCACTATTGCCGATATATGTTTAAGCATAGGAAAAATAAAAC
AACATCCACTTTGGAGATTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 225

Protein sequence:

>226_residues
MSAPLFKINELFETIQGEGTFTGVPSIFLRLQGCPVGCSWCDTKQTWDVELSDKTDLQTILAKTEDTPSWTELSSTQIIE
MLENQGYTAKHMVITGGEPCMYDLTSLTQELEQHGYRCQIETSGTYPILASDDTWVTVSPKINMKGKLPVLPVALSRANE
IKHPVGTTKDIEQLDALLEGVELLEDVTIALQPISQKPRATELCIETCIKRNWRLSIQTHKYLAIA

Sequences:

>Translated_226_residues
MSAPLFKINELFETIQGEGTFTGVPSIFLRLQGCPVGCSWCDTKQTWDVELSDKTDLQTILAKTEDTPSWTELSSTQIIE
MLENQGYTAKHMVITGGEPCMYDLTSLTQELEQHGYRCQIETSGTYPILASDDTWVTVSPKINMKGKLPVLPVALSRANE
IKHPVGTTKDIEQLDALLEGVELLEDVTIALQPISQKPRATELCIETCIKRNWRLSIQTHKYLAIA
>Mature_225_residues
SAPLFKINELFETIQGEGTFTGVPSIFLRLQGCPVGCSWCDTKQTWDVELSDKTDLQTILAKTEDTPSWTELSSTQIIEM
LENQGYTAKHMVITGGEPCMYDLTSLTQELEQHGYRCQIETSGTYPILASDDTWVTVSPKINMKGKLPVLPVALSRANEI
KHPVGTTKDIEQLDALLEGVELLEDVTIALQPISQKPRATELCIETCIKRNWRLSIQTHKYLAIA

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the radical SAM superfamily [H]

Homologues:

Organism=Escherichia coli, GI1789139, Length=221, Percent_Identity=60.6334841628959, Blast_Score=282, Evalue=1e-77,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 25231; Mature: 25100

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
5.3 %Cys+Met (Translated Protein)
3.1 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSAPLFKINELFETIQGEGTFTGVPSIFLRLQGCPVGCSWCDTKQTWDVELSDKTDLQTI
CCCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHH
LAKTEDTPSWTELSSTQIIEMLENQGYTAKHMVITGGEPCMYDLTSLTQELEQHGYRCQI
HHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEE
ETSGTYPILASDDTWVTVSPKINMKGKLPVLPVALSRANEIKHPVGTTKDIEQLDALLEG
ECCCCEEEEECCCCEEEECCCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VELLEDVTIALQPISQKPRATELCIETCIKRNWRLSIQTHKYLAIA
HHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCEEEEEECEEEEEC
>Mature Secondary Structure 
SAPLFKINELFETIQGEGTFTGVPSIFLRLQGCPVGCSWCDTKQTWDVELSDKTDLQTI
CCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCCCCEEEEEECCCHHHHHH
LAKTEDTPSWTELSSTQIIEMLENQGYTAKHMVITGGEPCMYDLTSLTQELEQHGYRCQI
HHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHHHHHHHHHHHHCCCEEEE
ETSGTYPILASDDTWVTVSPKINMKGKLPVLPVALSRANEIKHPVGTTKDIEQLDALLEG
ECCCCEEEEECCCCEEEECCCCCCCCCCCEEHHHHHHHHHHCCCCCCCHHHHHHHHHHHH
VELLEDVTIALQPISQKPRATELCIETCIKRNWRLSIQTHKYLAIA
HHHHHHHHHEEECCCCCCCHHHHHHHHHHCCCCEEEEEECEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]