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The map label for this gene is ynaI [H]

Identifier: 59713588

GI number: 59713588

Start: 460264

End: 461337

Strand: Reverse

Name: ynaI [H]

Synonym: VF_A0405

Alternate gene names: 59713588

Gene position: 461337-460264 (Counterclockwise)

Preceding gene: 59713589

Following gene: 59713585

Centisome position: 34.68

GC content: 38.18

Gene sequence:

>1074_bases
ATGACACGTTTCCTTGATTGGTGGAATACGCTTTTAGAGTTTAAAGATCACGATTGGGCACAAAATATTATCGTGATCAC
TCTATTTAGTGCATTTCTTTGGCTATCTTGGCGAGTAATCATTAAACGCCTTCATCATATTGCAGCAAAAACTCAACTAC
CTTGGGACGATGCTGTCATTACCGCTATCTCCGCTCCTGTAACTCTTGTTATTTGGCTTTGGCCTGCAACTGCTTCACTC
AAGATTTTACTGTCAACTCAGACTCATTTCAGTTCGACATGGCTTCCTGAGTTACAAGTATTTATTTTAATATGGGGTTT
TATTTGGTCTGCATTAAGGTTAACAAGCTTAATTGAAAAACAGTTTTTAACGAACCCTAAACATGACGAAACCACTGTTT
TAGCTCTTGGCAAAGTAGTACGCCTTATTTTTATCACCTTAGGCGTTCTCTCTTTAATGCAAGGGGTTGGACTAAGTTTA
TCAGGTCTACTCACCTTTGGTGGTGTTGGTGGCTTAGTCGTCGGTTTAGCTGCTAAAGATCTTCTCTCGAATTTCTTCGG
GGGGATGATGATTTATTTTGACCGCCCATTCAAAGTTGGTGATTGGATTCGATCTCCTGATCGTTCTTTAGAAGGAACGG
TTGAAAGAATTGGTTGGCGTATGACGGTAATAAGAACCTTTGATAAGCGCCCTCTTTATGTCCCTAACTCAGTATTTAGC
AATATTGTCGTAGAAAACCCATCACGCATGCTTAATCGTCGAATTAAAGAGGATATTGGCATTAGATATGATGATATTCA
TAGCATTGAGCGCATCGTTGATGAAATAAAAACGATGTTACAAGAGCATAATGATATCGATAGTAACCAGACACTCATTG
TGAACTTTAACGGTTTTGGTCCTTCGTCTTTGGACTTATTAGTTTATACCTTTACTAAAACGGTCAATTGGATTGAATAC
CATAAAGTAAAACAAGACGTACTGATCAAAATTGGGGATATTATTGCTCAAAATAATGCTGAAATAGCCTTCCCTACACA
AACTCTAAAAGTTGAACAGATCCCTTCTGAATAA

Upstream 100 bases:

>100_bases
TAAGGCTTGGATCATTTTTGCTGTCATATCTGTGTTTATCTACTTTATTTGGGCAGATGAAGTGATAAGCTACCTCTTTT
AGAATAAAAGAGAACTTTCA

Downstream 100 bases:

>100_bases
AAATACGATCTGAAAAACATAAAAAAGGCATACACTATTTTGTATGCCTTTTCTTTTATGGATTGAACTATACCAATCCG
GATAAGTAGTTGATCAGATA

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MTRFLDWWNTLLEFKDHDWAQNIIVITLFSAFLWLSWRVIIKRLHHIAAKTQLPWDDAVITAISAPVTLVIWLWPATASL
KILLSTQTHFSSTWLPELQVFILIWGFIWSALRLTSLIEKQFLTNPKHDETTVLALGKVVRLIFITLGVLSLMQGVGLSL
SGLLTFGGVGGLVVGLAAKDLLSNFFGGMMIYFDRPFKVGDWIRSPDRSLEGTVERIGWRMTVIRTFDKRPLYVPNSVFS
NIVVENPSRMLNRRIKEDIGIRYDDIHSIERIVDEIKTMLQEHNDIDSNQTLIVNFNGFGPSSLDLLVYTFTKTVNWIEY
HKVKQDVLIKIGDIIAQNNAEIAFPTQTLKVEQIPSE

Sequences:

>Translated_357_residues
MTRFLDWWNTLLEFKDHDWAQNIIVITLFSAFLWLSWRVIIKRLHHIAAKTQLPWDDAVITAISAPVTLVIWLWPATASL
KILLSTQTHFSSTWLPELQVFILIWGFIWSALRLTSLIEKQFLTNPKHDETTVLALGKVVRLIFITLGVLSLMQGVGLSL
SGLLTFGGVGGLVVGLAAKDLLSNFFGGMMIYFDRPFKVGDWIRSPDRSLEGTVERIGWRMTVIRTFDKRPLYVPNSVFS
NIVVENPSRMLNRRIKEDIGIRYDDIHSIERIVDEIKTMLQEHNDIDSNQTLIVNFNGFGPSSLDLLVYTFTKTVNWIEY
HKVKQDVLIKIGDIIAQNNAEIAFPTQTLKVEQIPSE
>Mature_356_residues
TRFLDWWNTLLEFKDHDWAQNIIVITLFSAFLWLSWRVIIKRLHHIAAKTQLPWDDAVITAISAPVTLVIWLWPATASLK
ILLSTQTHFSSTWLPELQVFILIWGFIWSALRLTSLIEKQFLTNPKHDETTVLALGKVVRLIFITLGVLSLMQGVGLSLS
GLLTFGGVGGLVVGLAAKDLLSNFFGGMMIYFDRPFKVGDWIRSPDRSLEGTVERIGWRMTVIRTFDKRPLYVPNSVFSN
IVVENPSRMLNRRIKEDIGIRYDDIHSIERIVDEIKTMLQEHNDIDSNQTLIVNFNGFGPSSLDLLVYTFTKTVNWIEYH
KVKQDVLIKIGDIIAQNNAEIAFPTQTLKVEQIPSE

Specific function: Unknown

COG id: COG0668

COG function: function code M; Small-conductance mechanosensitive channel

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the mscS (TC 1.A.23) family [H]

Homologues:

Organism=Escherichia coli, GI1787591, Length=245, Percent_Identity=53.469387755102, Blast_Score=268, Evalue=3e-73,
Organism=Escherichia coli, GI1789291, Length=259, Percent_Identity=27.027027027027, Blast_Score=78, Evalue=1e-15,
Organism=Escherichia coli, GI1786670, Length=300, Percent_Identity=23.3333333333333, Blast_Score=70, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010920
- InterPro:   IPR011066
- InterPro:   IPR006685
- InterPro:   IPR006686
- InterPro:   IPR011014 [H]

Pfam domain/function: PF00924 MS_channel [H]

EC number: NA

Molecular weight: Translated: 40836; Mature: 40705

Theoretical pI: Translated: 7.32; Mature: 7.32

Prosite motif: PS01246 UPF0003

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRFLDWWNTLLEFKDHDWAQNIIVITLFSAFLWLSWRVIIKRLHHIAAKTQLPWDDAVI
CCCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
TAISAPVTLVIWLWPATASLKILLSTQTHFSSTWLPELQVFILIWGFIWSALRLTSLIEK
HHHCCCEEEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QFLTNPKHDETTVLALGKVVRLIFITLGVLSLMQGVGLSLSGLLTFGGVGGLVVGLAAKD
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHH
LLSNFFGGMMIYFDRPFKVGDWIRSPDRSLEGTVERIGWRMTVIRTFDKRPLYVPNSVFS
HHHHHHCCEEEEEECCCCCHHHHCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCCHHHHH
NIVVENPSRMLNRRIKEDIGIRYDDIHSIERIVDEIKTMLQEHNDIDSNQTLIVNFNGFG
HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
PSSLDLLVYTFTKTVNWIEYHKVKQDVLIKIGDIIAQNNAEIAFPTQTLKVEQIPSE
CCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEECCCCCC
>Mature Secondary Structure 
TRFLDWWNTLLEFKDHDWAQNIIVITLFSAFLWLSWRVIIKRLHHIAAKTQLPWDDAVI
CCHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
TAISAPVTLVIWLWPATASLKILLSTQTHFSSTWLPELQVFILIWGFIWSALRLTSLIEK
HHHCCCEEEEEEEECCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
QFLTNPKHDETTVLALGKVVRLIFITLGVLSLMQGVGLSLSGLLTFGGVGGLVVGLAAKD
HHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCHHHHHHHHHHHH
LLSNFFGGMMIYFDRPFKVGDWIRSPDRSLEGTVERIGWRMTVIRTFDKRPLYVPNSVFS
HHHHHHCCEEEEEECCCCCHHHHCCCCCCHHHHHHHHCCEEEEEEECCCCCCCCCHHHHH
NIVVENPSRMLNRRIKEDIGIRYDDIHSIERIVDEIKTMLQEHNDIDSNQTLIVNFNGFG
HHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCC
PSSLDLLVYTFTKTVNWIEYHKVKQDVLIKIGDIIAQNNAEIAFPTQTLKVEQIPSE
CCCHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]