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The map label for this gene is yiaD [H]

Identifier: 59713511

GI number: 59713511

Start: 361620

End: 362288

Strand: Reverse

Name: yiaD [H]

Synonym: VF_A0328

Alternate gene names: 59713511

Gene position: 362288-361620 (Counterclockwise)

Preceding gene: 59713512

Following gene: 59713509

Centisome position: 27.23

GC content: 43.05

Gene sequence:

>669_bases
ATGAAAAAAATCACAATTGCGCTTGCATTACTTATTTCATTAACTGGCTGTCAGGCAACTCAACGCCAAAACGCAACAAC
TGGTGAGTCTGAAACAAACTCAGCAACTAAAGGCGTTCTTGCTGGTGCACTTGCAGGTGTTGCAATTGGTCTTGCAACAG
GTGATAACGCAAAAGAGCGTCGTAAAAACGCATTAATTGGTGCTGCTGCAGGTGGTGCTGTGGGTGGTGGTGTTGGTTAC
TACTTCGACCAACAAGAAAAAGCACTACGTAATGAGCTTAAGAGCTCTGGTGTTCAAGTTGAACGTGTAGGCAAAAACGA
ACTTAAACTAGTAATGGACAACGGTATTGGCTTCCAATCTAGCTCATACCAATTAGATGCTAGTATCTACAACACATTAA
ACGGTGTTGCACGTATCCTTGTTGAATACCCAGATACAGCTCTTCAAATTGACGGTCATACTGACAGTTCTGGTAATGCA
ACTAAAAACCAAACACTATCAGAGCAACGTGCTGATTCAGTGCGTACCTACCTAATTAAGCAAGACGTTGCCGCTGGTCG
AGTTAATGCTCGTGGTTACGGTGCTCGTTACCCAGTTTGTGATAACTCTACAAAACAAGGCCGTGCTTGTAACCGCCGTG
TAGAAATCACAATTTTACCGCTTAAATAA

Upstream 100 bases:

>100_bases
ATTATCAGTATTTTTGTCAATAACCTTTCATATAAAGCATTGATTTTTGATCATCTAGGAGTAAACTGCGCGCCACAGAT
GTACATAACTAGAGAAAAAC

Downstream 100 bases:

>100_bases
GTTAATTCACGCATCGTTAGCCATGAATTTAACCAAAACAGAAAATAACTGTATATAAAAACAGTTATTCTCTTGTTTTC
ATGGTTCGTTTGTATAGAAT

Product: outer membrane lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 222

Protein sequence:

>222_residues
MKKITIALALLISLTGCQATQRQNATTGESETNSATKGVLAGALAGVAIGLATGDNAKERRKNALIGAAAGGAVGGGVGY
YFDQQEKALRNELKSSGVQVERVGKNELKLVMDNGIGFQSSSYQLDASIYNTLNGVARILVEYPDTALQIDGHTDSSGNA
TKNQTLSEQRADSVRTYLIKQDVAAGRVNARGYGARYPVCDNSTKQGRACNRRVEITILPLK

Sequences:

>Translated_222_residues
MKKITIALALLISLTGCQATQRQNATTGESETNSATKGVLAGALAGVAIGLATGDNAKERRKNALIGAAAGGAVGGGVGY
YFDQQEKALRNELKSSGVQVERVGKNELKLVMDNGIGFQSSSYQLDASIYNTLNGVARILVEYPDTALQIDGHTDSSGNA
TKNQTLSEQRADSVRTYLIKQDVAAGRVNARGYGARYPVCDNSTKQGRACNRRVEITILPLK
>Mature_222_residues
MKKITIALALLISLTGCQATQRQNATTGESETNSATKGVLAGALAGVAIGLATGDNAKERRKNALIGAAAGGAVGGGVGY
YFDQQEKALRNELKSSGVQVERVGKNELKLVMDNGIGFQSSSYQLDASIYNTLNGVARILVEYPDTALQIDGHTDSSGNA
TKNQTLSEQRADSVRTYLIKQDVAAGRVNARGYGARYPVCDNSTKQGRACNRRVEITILPLK

Specific function: Unknown

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential). Cell inner membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI48994946, Length=225, Percent_Identity=47.1111111111111, Blast_Score=142, Evalue=3e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001035
- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 23467; Mature: 23467

Theoretical pI: Translated: 9.70; Mature: 9.70

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKITIALALLISLTGCQATQRQNATTGESETNSATKGVLAGALAGVAIGLATGDNAKER
CCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHHH
RKNALIGAAAGGAVGGGVGYYFDQQEKALRNELKSSGVQVERVGKNELKLVMDNGIGFQS
HHHHEEEECCCCCCCCCCCCEECHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCCC
SSYQLDASIYNTLNGVARILVEYPDTALQIDGHTDSSGNATKNQTLSEQRADSVRTYLIK
CCEEEHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
QDVAAGRVNARGYGARYPVCDNSTKQGRACNRRVEITILPLK
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MKKITIALALLISLTGCQATQRQNATTGESETNSATKGVLAGALAGVAIGLATGDNAKER
CCHHHHHHHHHHHHHCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEECCCCHHHH
RKNALIGAAAGGAVGGGVGYYFDQQEKALRNELKSSGVQVERVGKNELKLVMDNGIGFQS
HHHHEEEECCCCCCCCCCCCEECHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCCC
SSYQLDASIYNTLNGVARILVEYPDTALQIDGHTDSSGNATKNQTLSEQRADSVRTYLIK
CCEEEHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
QDVAAGRVNARGYGARYPVCDNSTKQGRACNRRVEITILPLK
HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8041620; 9278503; 2180922 [H]