Click here to switch to the map view.

The map label for this gene is yidZ [C]

Identifier: 59713397

GI number: 59713397

Start: 238736

End: 239644

Strand: Reverse

Name: yidZ [C]

Synonym: VF_A0214

Alternate gene names: 59713397

Gene position: 239644-238736 (Counterclockwise)

Preceding gene: 59713416

Following gene: 172087795

Centisome position: 18.01

GC content: 35.64

Gene sequence:

>909_bases
ATGCAGAACAAAGATCTAAATTTGCTCAGACTTCTCGTCATCCTAAATGAAGAGAGGCAAACCATTTTGGCAGCAAAACG
AATGAATTTAAGCCAACCTACAATCAGTATTATGCTAAAAAAGTTACGAGACCAATTTGGTGATCCTTTGTTCATTCGTG
ATAAAAACAACCTTACTCCTACAATCAAATGTGAAAACATATTAGCTACGCTTCCAGCTCTTTTGACTCAGCTAGATAAG
CTCTATTCAGATAATACTCAATGGGATATATCTCAATTGAATGGTGATTTAAACTTACTAATTTCCCCTCCTTTAATTCC
AACATTAGGTTCACAGTTAATTAAGAAACTGACGTTACTGGCTCCTGAATTAACCGTTCAATGCTCACACTGGGCAGGAG
ATACTCCACAGCGTTTAGAAAACAGCCCTCATCAGCACTTTGGAATTACTTATTTACCGATGGAGACAAATAAAACACTA
TTAGAGCAAGAAATTGGTGGTGATGAGTTTGCTTTTGTAGTGAGTAATGAGCATCCTTTGCAGCATGCGTCAATTGAAAA
CGTACTCTTATATCCTTTGGCTATTTGCCTTATTCCTGGAGGGATTACAGGGCCATCAAAAGCAGAGCAGTTAATTCGTA
ATCTTAAAATAAAGAAAAAAATCAATTTACGAACAAGCGATATTTCGTTAATGACAAATTTACTGAAAGAAAGTAATTAT
GTTGGTGTTATGCCACGAACTCTTCAGGCATTGATGCAACCTCATTTCCGCTTTTTACCGATACCTCATGAAATTGTGCC
TCAGAGCTATCAACGTAAAATTGCCTTATTTTGTCATCAAACAAATCGCAATCAACCATTAACTGAATGGCTAATTAAAG
AAGCAAAAGAAATTTTAAATTCAATTTAA

Upstream 100 bases:

>100_bases
ATCAATATCTCGATATTTTCACATAGTTGCTGAACTCACTTTTTTTTCAAGCTATATTTCTCTTTAGTTATTTTCAATGC
TCAGTGGTTAGGTAACATCC

Downstream 100 bases:

>100_bases
CTATTATTAATAACGAAATAGCAGCTCTCTATTAATATTCTTAATAGAGAGTATAGAGATAATTTCAAACCAAAAAACAT
AAGATCCCTTTAATTATATA

Product: transcriptional regulator SyrB

Products: NA

Alternate protein names: LysR Family Transcriptional Regulator; Transcriptional Regulator LysR Family; Transcriptional Regulator SyrB; Transcriptional Regulator LysR Family Protein; HTH-Type Transcriptional Regulator LysR-Family; Transcriptional Regulators LysR Family; Transcriptional Activator NahR

Number of amino acids: Translated: 302; Mature: 302

Protein sequence:

>302_residues
MQNKDLNLLRLLVILNEERQTILAAKRMNLSQPTISIMLKKLRDQFGDPLFIRDKNNLTPTIKCENILATLPALLTQLDK
LYSDNTQWDISQLNGDLNLLISPPLIPTLGSQLIKKLTLLAPELTVQCSHWAGDTPQRLENSPHQHFGITYLPMETNKTL
LEQEIGGDEFAFVVSNEHPLQHASIENVLLYPLAICLIPGGITGPSKAEQLIRNLKIKKKINLRTSDISLMTNLLKESNY
VGVMPRTLQALMQPHFRFLPIPHEIVPQSYQRKIALFCHQTNRNQPLTEWLIKEAKEILNSI

Sequences:

>Translated_302_residues
MQNKDLNLLRLLVILNEERQTILAAKRMNLSQPTISIMLKKLRDQFGDPLFIRDKNNLTPTIKCENILATLPALLTQLDK
LYSDNTQWDISQLNGDLNLLISPPLIPTLGSQLIKKLTLLAPELTVQCSHWAGDTPQRLENSPHQHFGITYLPMETNKTL
LEQEIGGDEFAFVVSNEHPLQHASIENVLLYPLAICLIPGGITGPSKAEQLIRNLKIKKKINLRTSDISLMTNLLKESNY
VGVMPRTLQALMQPHFRFLPIPHEIVPQSYQRKIALFCHQTNRNQPLTEWLIKEAKEILNSI
>Mature_302_residues
MQNKDLNLLRLLVILNEERQTILAAKRMNLSQPTISIMLKKLRDQFGDPLFIRDKNNLTPTIKCENILATLPALLTQLDK
LYSDNTQWDISQLNGDLNLLISPPLIPTLGSQLIKKLTLLAPELTVQCSHWAGDTPQRLENSPHQHFGITYLPMETNKTL
LEQEIGGDEFAFVVSNEHPLQHASIENVLLYPLAICLIPGGITGPSKAEQLIRNLKIKKKINLRTSDISLMTNLLKESNY
VGVMPRTLQALMQPHFRFLPIPHEIVPQSYQRKIALFCHQTNRNQPLTEWLIKEAKEILNSI

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 34354; Mature: 34354

Theoretical pI: Translated: 8.62; Mature: 8.62

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNKDLNLLRLLVILNEERQTILAAKRMNLSQPTISIMLKKLRDQFGDPLFIRDKNNLTP
CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC
TIKCENILATLPALLTQLDKLYSDNTQWDISQLNGDLNLLISPPLIPTLGSQLIKKLTLL
EEEHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
APELTVQCSHWAGDTPQRLENSPHQHFGITYLPMETNKTLLEQEIGGDEFAFVVSNEHPL
CCCCEEEECCCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHHHHCCCCEEEEEECCCCCC
QHASIENVLLYPLAICLIPGGITGPSKAEQLIRNLKIKKKINLRTSDISLMTNLLKESNY
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCC
VGVMPRTLQALMQPHFRFLPIPHEIVPQSYQRKIALFCHQTNRNQPLTEWLIKEAKEILN
EECCHHHHHHHHCCCCEECCCCHHHCCHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHH
SI
CC
>Mature Secondary Structure
MQNKDLNLLRLLVILNEERQTILAAKRMNLSQPTISIMLKKLRDQFGDPLFIRDKNNLTP
CCCCCHHHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCCC
TIKCENILATLPALLTQLDKLYSDNTQWDISQLNGDLNLLISPPLIPTLGSQLIKKLTLL
EEEHHHHHHHHHHHHHHHHHHHCCCCCEEHHHCCCCEEEEECCCCCHHHHHHHHHHHHHH
APELTVQCSHWAGDTPQRLENSPHQHFGITYLPMETNKTLLEQEIGGDEFAFVVSNEHPL
CCCCEEEECCCCCCCHHHHCCCCCCCCCEEEEECCCCHHHHHHHCCCCEEEEEECCCCCC
QHASIENVLLYPLAICLIPGGITGPSKAEQLIRNLKIKKKINLRTSDISLMTNLLKESNY
CHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCHHHHCCCCHHHHHHHHHHHHCCCC
VGVMPRTLQALMQPHFRFLPIPHEIVPQSYQRKIALFCHQTNRNQPLTEWLIKEAKEILN
EECCHHHHHHHHCCCCEECCCCHHHCCHHHHHHEEEEEECCCCCCCHHHHHHHHHHHHHH
SI
CC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA