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The map label for this gene is ydjX [H]

Identifier: 59713281

GI number: 59713281

Start: 109929

End: 110606

Strand: Reverse

Name: ydjX [H]

Synonym: VF_A0098

Alternate gene names: 59713281

Gene position: 110606-109929 (Counterclockwise)

Preceding gene: 59713282

Following gene: 59713280

Centisome position: 8.31

GC content: 39.09

Gene sequence:

>678_bases
ATGAAATTCGTAAAAATTGCTCTTATCATTGCTGTTATTGCATTGGTATTGTTTGCAGCTAAACAAACAGGCGTACTTGA
AATCATTACTGATATTAAGAGCCTTCAAGAATGGATCGCGGGCTTTGGAGCTTGGGGTTATATCGTATTTGTCGCAGCAT
TCGTGTTTGCTTGTGTATTTTTATTACCAGGCAGCGCCTTCACAATTGTAGCTGGCATCGTATTTGGTCCTATCAAAGGT
GGCGTTTTAGCACTATTTTCAGCGACATTAGGTGCAGTTGTGGCATTTATCGTTGCACGTTTCTTACTTCGCAATACCAT
CATGAAAAAGTTTGGTGATAACCCAATCTTTAAAAAAATCGATGACGGTGTAGCAAAGAACGGAACAAGCTTCTTAATCC
TAACTCGCTTAGTGCCTGTATTCCCATTCAGTTTACAAAACTATGCCTACGGTTTAACGGGTTTAAACCTAAGCACTTAC
GCTCTAGTTTCTTTAATTACTATGGCTCCTGGCGCATTCATTTTTGCTTACATGGCTGGTGATATTGCAACAAACGGCGT
ATCTGCAATGTTATTAGTTAAATTTGCTGTTGCGGGTCTGATCCTATTTGGTATGTCTCTAATTCCAAAATACATTGCGA
AGAAGAAAGGCATCAATATGGAAGAGTTAGCAAAGTAA

Upstream 100 bases:

>100_bases
CAACGTATTGGCAAGCCCAGTGAAATCATGGTTCAACCGCTATAAAGCAAAATCAGGCCTAATCAAGTGTATGTCTGTTG
ACTAATTAAAGGGACTTAAA

Downstream 100 bases:

>100_bases
TAAAGCGATAACCTTAGAACATTGGTATCCAACGTATTGCTAAACGTTATTAAAAAGGATGGTAATTGTTTGAAACTATT
ATTAATACCAGAGGTATAAT

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 225; Mature: 225

Protein sequence:

>225_residues
MKFVKIALIIAVIALVLFAAKQTGVLEIITDIKSLQEWIAGFGAWGYIVFVAAFVFACVFLLPGSAFTIVAGIVFGPIKG
GVLALFSATLGAVVAFIVARFLLRNTIMKKFGDNPIFKKIDDGVAKNGTSFLILTRLVPVFPFSLQNYAYGLTGLNLSTY
ALVSLITMAPGAFIFAYMAGDIATNGVSAMLLVKFAVAGLILFGMSLIPKYIAKKKGINMEELAK

Sequences:

>Translated_225_residues
MKFVKIALIIAVIALVLFAAKQTGVLEIITDIKSLQEWIAGFGAWGYIVFVAAFVFACVFLLPGSAFTIVAGIVFGPIKG
GVLALFSATLGAVVAFIVARFLLRNTIMKKFGDNPIFKKIDDGVAKNGTSFLILTRLVPVFPFSLQNYAYGLTGLNLSTY
ALVSLITMAPGAFIFAYMAGDIATNGVSAMLLVKFAVAGLILFGMSLIPKYIAKKKGINMEELAK
>Mature_225_residues
MKFVKIALIIAVIALVLFAAKQTGVLEIITDIKSLQEWIAGFGAWGYIVFVAAFVFACVFLLPGSAFTIVAGIVFGPIKG
GVLALFSATLGAVVAFIVARFLLRNTIMKKFGDNPIFKKIDDGVAKNGTSFLILTRLVPVFPFSLQNYAYGLTGLNLSTY
ALVSLITMAPGAFIFAYMAGDIATNGVSAMLLVKFAVAGLILFGMSLIPKYIAKKKGINMEELAK

Specific function: Unknown

COG id: COG0398

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the TVP38/TMEM64 family [H]

Homologues:

Organism=Escherichia coli, GI87081964, Length=210, Percent_Identity=40, Blast_Score=173, Evalue=1e-44,
Organism=Escherichia coli, GI1788049, Length=230, Percent_Identity=25.6521739130435, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015414 [H]

Pfam domain/function: PF09335 SNARE_assoc [H]

EC number: NA

Molecular weight: Translated: 24035; Mature: 24035

Theoretical pI: Translated: 10.35; Mature: 10.35

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKFVKIALIIAVIALVLFAAKQTGVLEIITDIKSLQEWIAGFGAWGYIVFVAAFVFACVF
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LLPGSAFTIVAGIVFGPIKGGVLALFSATLGAVVAFIVARFLLRNTIMKKFGDNPIFKKI
HCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DDGVAKNGTSFLILTRLVPVFPFSLQNYAYGLTGLNLSTYALVSLITMAPGAFIFAYMAG
HHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHH
DIATNGVSAMLLVKFAVAGLILFGMSLIPKYIAKKKGINMEELAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC
>Mature Secondary Structure
MKFVKIALIIAVIALVLFAAKQTGVLEIITDIKSLQEWIAGFGAWGYIVFVAAFVFACVF
CHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHH
LLPGSAFTIVAGIVFGPIKGGVLALFSATLGAVVAFIVARFLLRNTIMKKFGDNPIFKKI
HCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHH
DDGVAKNGTSFLILTRLVPVFPFSLQNYAYGLTGLNLSTYALVSLITMAPGAFIFAYMAG
HHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCHHHHHHHHHH
DIATNGVSAMLLVKFAVAGLILFGMSLIPKYIAKKKGINMEELAK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]