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The map label for this gene is ynjB [H]

Identifier: 59713280

GI number: 59713280

Start: 108543

End: 109688

Strand: Reverse

Name: ynjB [H]

Synonym: VF_A0097

Alternate gene names: 59713280

Gene position: 109688-108543 (Counterclockwise)

Preceding gene: 59713281

Following gene: 59713279

Centisome position: 8.25

GC content: 41.19

Gene sequence:

>1146_bases
ATGAATAAGCAACTTACCACCATCGGGATCATGGCTTCACTTTTTGCAACCTCCTCTTTTGCCACCGATTGGACACAAAT
TGAAAAAGAAGCTCAAGGACAAACGGTTTATTTTCATGCTTGGGGCGGTAGCCAAGAGATTAACCATTATCTTCAATGGG
CAAATAAAGAACTGCAATCAAAATACCAAGTGACTTTAAAACACGTAAAAGTCAGTGATATTTCTGAGACTATTCCACGT
CTTATTGCTGAAAAAGCAGCAGATAAAAACACGAACGGTAGTGTCGATATGGTTTGGATTAACGGTGAAAACTTCAAATC
CATGAAAGACAATCAATTGCTGTTTGGTCCATTTACTGAAAATCTACCAAGCTGGAAATACGTCGATAAAATGTTACCTA
TTGATGTGGATTTTTCAGAGCCAACTGATGGTTTAGAAGCACCTTGGGGTGTGGGGCAACTGGTGTTTATTCATGACTCT
GAGAACCTAACAAACCCACCACATTCATTTGCAGAAATGCTCAGTTATGCTCAGAAAAAACCAAACAGCTTAAGTTATCC
TCGCCCACCAGAGTTTCATGGGACGAGTGTCTTAAAATCTATGTTAATTGAGCTAACAAACAATAACCCTGCGCTGCAAA
AACCCGTTTCTGAATCGGATTTTAATGCCGTAACCGCACCACTGTGGGATTACCTCGAAAAATTCCATAAAGTGGCTTGG
CGTGGCGGTAAGCAGTTCCCTGCAGGTACATCGGAAACGATTCAACTACTTGATGATGGACAGCTTGATTTAGCCGTTAC
TTTCAATCCAAACGCTGTATATTCTGCACAAGCCAATGGTAACTTAGCCAATACGACTAAAGCTTATGCCATGGATTCTG
GTGCGCTCTCTAACATTCACTTTTTAGCTATTCCATGGAATGCAAAAGCAAGTGCGGGTGCACAAGTTGCCATTAATTTC
TTATTAAGCCCAGAAGCACAATCTCGTAAAGGGGATTTGAATGTCTGGGGTGATCCCTCTGTATTAAGTAGCAAATACCT
AACGGGTAGCGCAAAGAATACGCAACAATTTAAATCTGTTTCTGAACCGCACCCAAGTTGGCAAGCGGCTATCGAAAAAG
AATGGTTAAAACGCTTCGGTAGTTAA

Upstream 100 bases:

>100_bases
TACAACAAAAAACTCTTACCGCTATCACACTTTTTATAATAAATAAGAGTAATAAACAGTACGCTTGCTATAACCAATAA
AATACTCAACGGATGACTTT

Downstream 100 bases:

>100_bases
GTTTAAGTAAAATTAGTATGTTACGAGCTCTATATCTTATTATTATTGCAGTCTGTATTCTGCCTACACTTCCCGGATTA
CTGGGAGTTGCAGTGTCTGC

Product: putative ABC transporter solute-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 381; Mature: 381

Protein sequence:

>381_residues
MNKQLTTIGIMASLFATSSFATDWTQIEKEAQGQTVYFHAWGGSQEINHYLQWANKELQSKYQVTLKHVKVSDISETIPR
LIAEKAADKNTNGSVDMVWINGENFKSMKDNQLLFGPFTENLPSWKYVDKMLPIDVDFSEPTDGLEAPWGVGQLVFIHDS
ENLTNPPHSFAEMLSYAQKKPNSLSYPRPPEFHGTSVLKSMLIELTNNNPALQKPVSESDFNAVTAPLWDYLEKFHKVAW
RGGKQFPAGTSETIQLLDDGQLDLAVTFNPNAVYSAQANGNLANTTKAYAMDSGALSNIHFLAIPWNAKASAGAQVAINF
LLSPEAQSRKGDLNVWGDPSVLSSKYLTGSAKNTQQFKSVSEPHPSWQAAIEKEWLKRFGS

Sequences:

>Translated_381_residues
MNKQLTTIGIMASLFATSSFATDWTQIEKEAQGQTVYFHAWGGSQEINHYLQWANKELQSKYQVTLKHVKVSDISETIPR
LIAEKAADKNTNGSVDMVWINGENFKSMKDNQLLFGPFTENLPSWKYVDKMLPIDVDFSEPTDGLEAPWGVGQLVFIHDS
ENLTNPPHSFAEMLSYAQKKPNSLSYPRPPEFHGTSVLKSMLIELTNNNPALQKPVSESDFNAVTAPLWDYLEKFHKVAW
RGGKQFPAGTSETIQLLDDGQLDLAVTFNPNAVYSAQANGNLANTTKAYAMDSGALSNIHFLAIPWNAKASAGAQVAINF
LLSPEAQSRKGDLNVWGDPSVLSSKYLTGSAKNTQQFKSVSEPHPSWQAAIEKEWLKRFGS
>Mature_381_residues
MNKQLTTIGIMASLFATSSFATDWTQIEKEAQGQTVYFHAWGGSQEINHYLQWANKELQSKYQVTLKHVKVSDISETIPR
LIAEKAADKNTNGSVDMVWINGENFKSMKDNQLLFGPFTENLPSWKYVDKMLPIDVDFSEPTDGLEAPWGVGQLVFIHDS
ENLTNPPHSFAEMLSYAQKKPNSLSYPRPPEFHGTSVLKSMLIELTNNNPALQKPVSESDFNAVTAPLWDYLEKFHKVAW
RGGKQFPAGTSETIQLLDDGQLDLAVTFNPNAVYSAQANGNLANTTKAYAMDSGALSNIHFLAIPWNAKASAGAQVAINF
LLSPEAQSRKGDLNVWGDPSVLSSKYLTGSAKNTQQFKSVSEPHPSWQAAIEKEWLKRFGS

Specific function: Unknown

COG id: COG4134

COG function: function code R; ABC-type uncharacterized transport system, periplasmic component

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081966, Length=371, Percent_Identity=43.1266846361186, Blast_Score=319, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006059 [H]

Pfam domain/function: PF01547 SBP_bac_1 [H]

EC number: NA

Molecular weight: Translated: 42292; Mature: 42292

Theoretical pI: Translated: 6.05; Mature: 6.05

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNKQLTTIGIMASLFATSSFATDWTQIEKEAQGQTVYFHAWGGSQEINHYLQWANKELQS
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
KYQVTLKHVKVSDISETIPRLIAEKAADKNTNGSVDMVWINGENFKSMKDNQLLFGPFTE
HHHHHEEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEECCHHC
NLPSWKYVDKMLPIDVDFSEPTDGLEAPWGVGQLVFIHDSENLTNPPHSFAEMLSYAQKK
CCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCC
PNSLSYPRPPEFHGTSVLKSMLIELTNNNPALQKPVSESDFNAVTAPLWDYLEKFHKVAW
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
RGGKQFPAGTSETIQLLDDGQLDLAVTFNPNAVYSAQANGNLANTTKAYAMDSGALSNIH
CCCCCCCCCCHHHEEEEECCCEEEEEEECCCEEEEECCCCCCCCCCHHEEECCCCCCCEE
FLAIPWNAKASAGAQVAINFLLSPEAQSRKGDLNVWGDPSVLSSKYLTGSAKNTQQFKSV
EEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCHHHHHHHCCCCCCCHHHHHHC
SEPHPSWQAAIEKEWLKRFGS
CCCCCHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNKQLTTIGIMASLFATSSFATDWTQIEKEAQGQTVYFHAWGGSQEINHYLQWANKELQS
CCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHH
KYQVTLKHVKVSDISETIPRLIAEKAADKNTNGSVDMVWINGENFKSMKDNQLLFGPFTE
HHHHHEEEEEHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCEEEECCHHC
NLPSWKYVDKMLPIDVDFSEPTDGLEAPWGVGQLVFIHDSENLTNPPHSFAEMLSYAQKK
CCCCHHHHHHHCCEECCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHCC
PNSLSYPRPPEFHGTSVLKSMLIELTNNNPALQKPVSESDFNAVTAPLWDYLEKFHKVAW
CCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
RGGKQFPAGTSETIQLLDDGQLDLAVTFNPNAVYSAQANGNLANTTKAYAMDSGALSNIH
CCCCCCCCCCHHHEEEEECCCEEEEEEECCCEEEEECCCCCCCCCCHHEEECCCCCCCEE
FLAIPWNAKASAGAQVAINFLLSPEAQSRKGDLNVWGDPSVLSSKYLTGSAKNTQQFKSV
EEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCHHHHHHHCCCCCCCHHHHHHC
SEPHPSWQAAIEKEWLKRFGS
CCCCCHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 10806384 [H]