Click here to switch to the map view.

The map label for this gene is ynjC [H]

Identifier: 59713279

GI number: 59713279

Start: 106864

End: 108525

Strand: Reverse

Name: ynjC [H]

Synonym: VF_A0096

Alternate gene names: 59713279

Gene position: 108525-106864 (Counterclockwise)

Preceding gene: 59713280

Following gene: 59713278

Centisome position: 8.16

GC content: 42.18

Gene sequence:

>1662_bases
ATGTTACGAGCTCTATATCTTATTATTATTGCAGTCTGTATTCTGCCTACACTTCCCGGATTACTGGGAGTTGCAGTGTC
TGCTTTGGGCTATATTCCACCTCTTGGTATGCATCACTTTTCCTTAGATGGTTTTGCATTGGTTTTTTCTTGGGAGGGAG
TATGGCGCTCTATCGGGCTCACAATATATTCAGCCATAACCAGCAGCTATTTAGCGTGTTTGATCACCTTTGCTGTTTTA
CAAGCCACATGGGGAAGTAAATTTTGGCGAAAAGTAGAATTATCTCTATCGCCTTTATTAGCTACACCCCATGTAGCCTT
TGCAATTGGTTTTTCTTTTTTATTTGCACCAACAGGAATGGGGGTTCGCGCTCTTCACGGTCTATTTGGTTACGATGCTT
CACCTCAAGACATTAATGACCTCGCGTTCTTAATCAAAGACCCGCATGCGCTTGGTTTAATTGTGATGCTAGCATTAAAA
GAAGTGCCGTTCTTACTGCTAATGAGCATCTCAATTCTTACCCAACTTAAAATTGATCAAATTGAGAAGGTCAGTGCCTC
TTTAGGTTATAGCAAAGCACAAATGTGGTGGAAGTGCGTGTTTCCACAATGGTTAGCAAAACTACGCTTCCCAATGCTTG
CTGTCATTGCATATAGCTTATCCGTTGTTGATGTCGCCTTAATTATTGGGCCAACCAACCCACCGACTTTTGCGGTTTTA
GTTTGGCAGTGGTTTACAGAGCCCGATCTAAATTTACTGCCTCGTGCAGCGGCCGGAGCGGTTGTACTTTTTGCCATTGC
TTCTCTATTAATCGCTTTTGCTCGCTTGGTGGAATGGACAGTAACAAAAGGCATTAAATGCTGGCAATACTCAGGTCGTA
GCGGTATTTCTCTTCCTGGCAAATCGCTTTTCTTACTCATCATCTCGCTCACGGTATTAATGGTGCCATTAATGATTATC
TGGAGTTTTGCACAACGTTGGCGATTCCCAGATTTATTACCTAGTCGTTATAGTGAACGATTTTGGCAATTAGAATGGGA
CAGCATTTTGAGCACCATAAATCAGAGTCTTTCCATTGCCATCATTACCGCTTCTATTGCGTTAGTGCTTGCGGTGTTAG
CTCATGAATACCGCATTAAATACAAATGGCAAGTTCCGGGATATATCATTGCGATTCCAATGCTTATCCCTCAACTTTCT
ATATTATTTGGCTTGCAAGTAGTTACGCTTTATTTAAGCAGTGATTCCTATTTCTTCTGGGTATGTTGGGCGCATGTTTT
CTTTGCTTTCCCATTTGTTTATTTATCACTTGATGGTCCTTGGAAAAGCTTTGATACCGGTCTTACTCGTGTTGCTTTGA
GCCTAGGAAAATCACCGCTACAAGCGTGGTGGAAAGTAAAAATGCCTATTTTACTGCCTGCTATTGTTTTTGCATGGGCG
GTTGGGATCAGCGTGAGCTTAGCGCAATATCTTCCGACATTAATGCTCGGTGCCGGCAGAATTAGCACAATTACAACTGA
AGCGGTTGCGCTTTCAAGCGGTTTTGATCGTAGAGTGACTGCGATATACGCAATTTGGCAGGCTTTACTACCGTTATTTT
TCTTTACCTTTGCGATTATGATCAGCCGTTTGCCGATAAAATGTCGCCGTATTTCTATTTAA

Upstream 100 bases:

>100_bases
AACAATTTAAATCTGTTTCTGAACCGCACCCAAGTTGGCAAGCGGCTATCGAAAAAGAATGGTTAAAACGCTTCGGTAGT
TAAGTTTAAGTAAAATTAGT

Downstream 100 bases:

>100_bases
GGTTAATTACCGAATGTGTCTTTATCTTGAAAATCTCGCTATTCATAAAACCGGTGGCGAAGCTCTATTTACCTCTCTAA
ATATGAGAGTAAAAAAAGGA

Product: ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 553; Mature: 553

Protein sequence:

>553_residues
MLRALYLIIIAVCILPTLPGLLGVAVSALGYIPPLGMHHFSLDGFALVFSWEGVWRSIGLTIYSAITSSYLACLITFAVL
QATWGSKFWRKVELSLSPLLATPHVAFAIGFSFLFAPTGMGVRALHGLFGYDASPQDINDLAFLIKDPHALGLIVMLALK
EVPFLLLMSISILTQLKIDQIEKVSASLGYSKAQMWWKCVFPQWLAKLRFPMLAVIAYSLSVVDVALIIGPTNPPTFAVL
VWQWFTEPDLNLLPRAAAGAVVLFAIASLLIAFARLVEWTVTKGIKCWQYSGRSGISLPGKSLFLLIISLTVLMVPLMII
WSFAQRWRFPDLLPSRYSERFWQLEWDSILSTINQSLSIAIITASIALVLAVLAHEYRIKYKWQVPGYIIAIPMLIPQLS
ILFGLQVVTLYLSSDSYFFWVCWAHVFFAFPFVYLSLDGPWKSFDTGLTRVALSLGKSPLQAWWKVKMPILLPAIVFAWA
VGISVSLAQYLPTLMLGAGRISTITTEAVALSSGFDRRVTAIYAIWQALLPLFFFTFAIMISRLPIKCRRISI

Sequences:

>Translated_553_residues
MLRALYLIIIAVCILPTLPGLLGVAVSALGYIPPLGMHHFSLDGFALVFSWEGVWRSIGLTIYSAITSSYLACLITFAVL
QATWGSKFWRKVELSLSPLLATPHVAFAIGFSFLFAPTGMGVRALHGLFGYDASPQDINDLAFLIKDPHALGLIVMLALK
EVPFLLLMSISILTQLKIDQIEKVSASLGYSKAQMWWKCVFPQWLAKLRFPMLAVIAYSLSVVDVALIIGPTNPPTFAVL
VWQWFTEPDLNLLPRAAAGAVVLFAIASLLIAFARLVEWTVTKGIKCWQYSGRSGISLPGKSLFLLIISLTVLMVPLMII
WSFAQRWRFPDLLPSRYSERFWQLEWDSILSTINQSLSIAIITASIALVLAVLAHEYRIKYKWQVPGYIIAIPMLIPQLS
ILFGLQVVTLYLSSDSYFFWVCWAHVFFAFPFVYLSLDGPWKSFDTGLTRVALSLGKSPLQAWWKVKMPILLPAIVFAWA
VGISVSLAQYLPTLMLGAGRISTITTEAVALSSGFDRRVTAIYAIWQALLPLFFFTFAIMISRLPIKCRRISI
>Mature_553_residues
MLRALYLIIIAVCILPTLPGLLGVAVSALGYIPPLGMHHFSLDGFALVFSWEGVWRSIGLTIYSAITSSYLACLITFAVL
QATWGSKFWRKVELSLSPLLATPHVAFAIGFSFLFAPTGMGVRALHGLFGYDASPQDINDLAFLIKDPHALGLIVMLALK
EVPFLLLMSISILTQLKIDQIEKVSASLGYSKAQMWWKCVFPQWLAKLRFPMLAVIAYSLSVVDVALIIGPTNPPTFAVL
VWQWFTEPDLNLLPRAAAGAVVLFAIASLLIAFARLVEWTVTKGIKCWQYSGRSGISLPGKSLFLLIISLTVLMVPLMII
WSFAQRWRFPDLLPSRYSERFWQLEWDSILSTINQSLSIAIITASIALVLAVLAHEYRIKYKWQVPGYIIAIPMLIPQLS
ILFGLQVVTLYLSSDSYFFWVCWAHVFFAFPFVYLSLDGPWKSFDTGLTRVALSLGKSPLQAWWKVKMPILLPAIVFAWA
VGISVSLAQYLPTLMLGAGRISTITTEAVALSSGFDRRVTAIYAIWQALLPLFFFTFAIMISRLPIKCRRISI

Specific function: Probably part of the binding-protein-dependent transport system ynjCD. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG4135

COG function: function code R; ABC-type uncharacterized transport system, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transmembrane type-1 domains [H]

Homologues:

Organism=Escherichia coli, GI145693149, Length=195, Percent_Identity=38.4615384615385, Blast_Score=98, Evalue=1e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 61658; Mature: 61658

Theoretical pI: Translated: 9.87; Mature: 9.87

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLRALYLIIIAVCILPTLPGLLGVAVSALGYIPPLGMHHFSLDGFALVFSWEGVWRSIGL
CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEEHHHHHHHHH
TIYSAITSSYLACLITFAVLQATWGSKFWRKVELSLSPLLATPHVAFAIGFSFLFAPTGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
GVRALHGLFGYDASPQDINDLAFLIKDPHALGLIVMLALKEVPFLLLMSISILTQLKIDQ
CHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEKVSASLGYSKAQMWWKCVFPQWLAKLRFPMLAVIAYSLSVVDVALIIGPTNPPTFAVL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEE
VWQWFTEPDLNLLPRAAAGAVVLFAIASLLIAFARLVEWTVTKGIKCWQYSGRSGISLPG
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
KSLFLLIISLTVLMVPLMIIWSFAQRWRFPDLLPSRYSERFWQLEWDSILSTINQSLSIA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCEEE
IITASIALVLAVLAHEYRIKYKWQVPGYIIAIPMLIPQLSILFGLQVVTLYLSSDSYFFW
HHHHHHHHHHHHHHHHHEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHEEECCCCEEEH
VCWAHVFFAFPFVYLSLDGPWKSFDTGLTRVALSLGKSPLQAWWKVKMPILLPAIVFAWA
HHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHH
VGISVSLAQYLPTLMLGAGRISTITTEAVALSSGFDRRVTAIYAIWQALLPLFFFTFAIM
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ISRLPIKCRRISI
HHCCCCCEEECCC
>Mature Secondary Structure
MLRALYLIIIAVCILPTLPGLLGVAVSALGYIPPLGMHHFSLDGFALVFSWEGVWRSIGL
CHHHHHHHHHHHHHHHHCHHHHHHHHHHHHCCCCCCCCEECCCCEEEEEEEHHHHHHHHH
TIYSAITSSYLACLITFAVLQATWGSKFWRKVELSLSPLLATPHVAFAIGFSFLFAPTGM
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCC
GVRALHGLFGYDASPQDINDLAFLIKDPHALGLIVMLALKEVPFLLLMSISILTQLKIDQ
CHHHHHHHHCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IEKVSASLGYSKAQMWWKCVFPQWLAKLRFPMLAVIAYSLSVVDVALIIGPTNPPTFAVL
HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCCEEEE
VWQWFTEPDLNLLPRAAAGAVVLFAIASLLIAFARLVEWTVTKGIKCWQYSGRSGISLPG
EEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCC
KSLFLLIISLTVLMVPLMIIWSFAQRWRFPDLLPSRYSERFWQLEWDSILSTINQSLSIA
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCHHHHHHHHCCCCEEE
IITASIALVLAVLAHEYRIKYKWQVPGYIIAIPMLIPQLSILFGLQVVTLYLSSDSYFFW
HHHHHHHHHHHHHHHHHEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHEEECCCCEEEH
VCWAHVFFAFPFVYLSLDGPWKSFDTGLTRVALSLGKSPLQAWWKVKMPILLPAIVFAWA
HHHHHHHHHHHHHEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHHHCCHHHHHHHHHHHH
VGISVSLAQYLPTLMLGAGRISTITTEAVALSSGFDRRVTAIYAIWQALLPLFFFTFAIM
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
ISRLPIKCRRISI
HHCCCCCEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]