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The map label for this gene is mshC2

Identifier: 59713262

GI number: 59713262

Start: 85529

End: 86053

Strand: Reverse

Name: mshC2

Synonym: VF_A0079

Alternate gene names: NA

Gene position: 86053-85529 (Counterclockwise)

Preceding gene: 59713263

Following gene: 59713261

Centisome position: 6.47

GC content: 36.19

Gene sequence:

>525_bases
ATGACTCGTAATCAAATAGATGGATTTACATTAATTGAACTTATTGCAGTAATTGTTTTAATTTCAATTATCTCGCTCAG
TGCCAGCAGCTATTTCTCAGGAATTAGTAGCGTTTCTGCACAAACATTAGAAACGGAATTATTGCGTTCATTACGTTTAA
CCCAAACTCGAGCTATGAACCGAAACGGTTACTGTAACCGATGGCTAATTAATGAAAATCGTGCACAACAAGTTAGCCTT
GATAAAAAAACAGAATGCGCAACCTCATTCCCAAATACCCAGCGCAATAATGAGTATCTTGAAAACCAAGACCTCACCTA
CGTGGCTATTTTAGAAAAACATAACGCCTATTTCGCATTGCAAATAGGAAACCAATACAAAACACTTACCACACCTTTTG
CCTTTGATTTTGATGCGATGGGACGTATAAAACAGTGCCAAAACACATCATGTGAAATTTTAATTACCGCCAAAACACAA
ACTAAAATTTGTATCGAAAAAGAGGGCTATATCCATGCTTGTTAA

Upstream 100 bases:

>100_bases
TGCATTGTTCACTTTAATGCTTCTTATTTTACTTCTATTAAAAACTTTTATCCGTAAACTACCCAACCTTCATACGGTTT
AAATATTTTGTAACGAAAAA

Downstream 100 bases:

>100_bases
ACATCAACAAGGGTTTAGCTTAATTTCTATTGTTTTATCGATAGTTATAATGAGTGCGGCTTTACTTATCGTAACCACTT
CTCTCGTTCCTCGTTCACAA

Product: MSHA pilin protein MshC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 174; Mature: 173

Protein sequence:

>174_residues
MTRNQIDGFTLIELIAVIVLISIISLSASSYFSGISSVSAQTLETELLRSLRLTQTRAMNRNGYCNRWLINENRAQQVSL
DKKTECATSFPNTQRNNEYLENQDLTYVAILEKHNAYFALQIGNQYKTLTTPFAFDFDAMGRIKQCQNTSCEILITAKTQ
TKICIEKEGYIHAC

Sequences:

>Translated_174_residues
MTRNQIDGFTLIELIAVIVLISIISLSASSYFSGISSVSAQTLETELLRSLRLTQTRAMNRNGYCNRWLINENRAQQVSL
DKKTECATSFPNTQRNNEYLENQDLTYVAILEKHNAYFALQIGNQYKTLTTPFAFDFDAMGRIKQCQNTSCEILITAKTQ
TKICIEKEGYIHAC
>Mature_173_residues
TRNQIDGFTLIELIAVIVLISIISLSASSYFSGISSVSAQTLETELLRSLRLTQTRAMNRNGYCNRWLINENRAQQVSLD
KKTECATSFPNTQRNNEYLENQDLTYVAILEKHNAYFALQIGNQYKTLTTPFAFDFDAMGRIKQCQNTSCEILITAKTQT
KICIEKEGYIHAC

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19766; Mature: 19635

Theoretical pI: Translated: 7.77; Mature: 7.77

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.4 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRNQIDGFTLIELIAVIVLISIISLSASSYFSGISSVSAQTLETELLRSLRLTQTRAMN
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RNGYCNRWLINENRAQQVSLDKKTECATSFPNTQRNNEYLENQDLTYVAILEKHNAYFAL
CCCCCCEEEECCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEE
QIGNQYKTLTTPFAFDFDAMGRIKQCQNTSCEILITAKTQTKICIEKEGYIHAC
EECCCEEEECCCCEECHHHHHHHHHHCCCCEEEEEEECCCEEEEEECCCEEECC
>Mature Secondary Structure 
TRNQIDGFTLIELIAVIVLISIISLSASSYFSGISSVSAQTLETELLRSLRLTQTRAMN
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RNGYCNRWLINENRAQQVSLDKKTECATSFPNTQRNNEYLENQDLTYVAILEKHNAYFAL
CCCCCCEEEECCCCCCEECCCCCCHHHCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEE
QIGNQYKTLTTPFAFDFDAMGRIKQCQNTSCEILITAKTQTKICIEKEGYIHAC
EECCCEEEECCCCEECHHHHHHHHHHCCCCEEEEEEECCCEEEEEECCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA