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The map label for this gene is mshD2

Identifier: 59713261

GI number: 59713261

Start: 84985

End: 85539

Strand: Reverse

Name: mshD2

Synonym: VF_A0078

Alternate gene names: NA

Gene position: 85539-84985 (Counterclockwise)

Preceding gene: 59713262

Following gene: 59713260

Centisome position: 6.43

GC content: 38.74

Gene sequence:

>555_bases
ATGCTTGTTAAACATCAACAAGGGTTTAGCTTAATTTCTATTGTTTTATCGATAGTTATAATGAGTGCGGCTTTACTTAT
CGTAACCACTTCTCTCGTTCCTCGTTCACAACATAATGCTGAATTAATGTACTCAACAAAAGCATCTGAGTTGGGCGCTG
CGGTGATGGATGAAATTGTAGGTCGTCAATTTGACCAAAACAGTGGTCCTAATGGTGGATTACCTGCATGTAATAGCCCT
ACAGGGGAACAATGTACAACCATTAGCGGGCTAGGAAAAGATACGAACCCTATTACCGGTGTAGAAGAATCAAATCGAAC
GCTCTACAACGATGTTGATGATTTTGATGGTCTATCAGGTTCTGTAAAAGATGTATTAGGTAATGATTTAGCAGGTATCT
ACCCTAACTTCTCTATTTCTATTGAGGTTTTCTACGACGCTAATTTAGATGGTAAACCTGATGCTATTAGTGGAAACAGA
AAACGTATTGTTGTTGATGTGGTCGACCCATCAGGACAACACTACGTATTTTCAGTGATTCGAGGTAACTTTTAA

Upstream 100 bases:

>100_bases
GCGATGGGACGTATAAAACAGTGCCAAAACACATCATGTGAAATTTTAATTACCGCCAAAACACAAACTAAAATTTGTAT
CGAAAAAGAGGGCTATATCC

Downstream 100 bases:

>100_bases
TGAAACGATCCCTTGGATTTACTCTACTTGAGATGATTATTTCTATCATTTTACTTGCGGTGGTTGGTTTGTCTCTTGGT
GCCATAATTCAGCACAGTAT

Product: MshD protein

Products: NA

Alternate protein names: Methylation Site Containing Protein; MshD Protein; Mannose-Sensitive Agglutinin; Type IV Pilus Prepilin-Like Protein; Prepilin-Type Cleavage/Methylation-Like; Pilin Protein

Number of amino acids: Translated: 184; Mature: 184

Protein sequence:

>184_residues
MLVKHQQGFSLISIVLSIVIMSAALLIVTTSLVPRSQHNAELMYSTKASELGAAVMDEIVGRQFDQNSGPNGGLPACNSP
TGEQCTTISGLGKDTNPITGVEESNRTLYNDVDDFDGLSGSVKDVLGNDLAGIYPNFSISIEVFYDANLDGKPDAISGNR
KRIVVDVVDPSGQHYVFSVIRGNF

Sequences:

>Translated_184_residues
MLVKHQQGFSLISIVLSIVIMSAALLIVTTSLVPRSQHNAELMYSTKASELGAAVMDEIVGRQFDQNSGPNGGLPACNSP
TGEQCTTISGLGKDTNPITGVEESNRTLYNDVDDFDGLSGSVKDVLGNDLAGIYPNFSISIEVFYDANLDGKPDAISGNR
KRIVVDVVDPSGQHYVFSVIRGNF
>Mature_184_residues
MLVKHQQGFSLISIVLSIVIMSAALLIVTTSLVPRSQHNAELMYSTKASELGAAVMDEIVGRQFDQNSGPNGGLPACNSP
TGEQCTTISGLGKDTNPITGVEESNRTLYNDVDDFDGLSGSVKDVLGNDLAGIYPNFSISIEVFYDANLDGKPDAISGNR
KRIVVDVVDPSGQHYVFSVIRGNF

Specific function: Unknown

COG id: COG2165

COG function: function code NU; Type II secretory pathway, pseudopilin PulG

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19639; Mature: 19639

Theoretical pI: Translated: 4.38; Mature: 4.38

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLVKHQQGFSLISIVLSIVIMSAALLIVTTSLVPRSQHNAELMYSTKASELGAAVMDEIV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHH
GRQFDQNSGPNGGLPACNSPTGEQCTTISGLGKDTNPITGVEESNRTLYNDVDDFDGLSG
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
SVKDVLGNDLAGIYPNFSISIEVFYDANLDGKPDAISGNRKRIVVDVVDPSGQHYVFSVI
HHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEE
RGNF
ECCC
>Mature Secondary Structure
MLVKHQQGFSLISIVLSIVIMSAALLIVTTSLVPRSQHNAELMYSTKASELGAAVMDEIV
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEECCHHHHHHHHHHHHH
GRQFDQNSGPNGGLPACNSPTGEQCTTISGLGKDTNPITGVEESNRTLYNDVDDFDGLSG
CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCEECCCCCCCCCCCC
SVKDVLGNDLAGIYPNFSISIEVFYDANLDGKPDAISGNRKRIVVDVVDPSGQHYVFSVI
HHHHHHCCCCCCCCCCCEEEEEEEEECCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEE
RGNF
ECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA