Click here to switch to the map view.

The map label for this gene is cspG [H]

Identifier: 59713168

GI number: 59713168

Start: 2884150

End: 2884359

Strand: Direct

Name: cspG [H]

Synonym: VF_2561

Alternate gene names: 59713168

Gene position: 2884150-2884359 (Clockwise)

Preceding gene: 59713167

Following gene: NA

Centisome position: 99.54

GC content: 44.29

Gene sequence:

>210_bases
ATGTCTAAATCAACTGGTATCGTTAAGTGGTTCAACGAAGAGAAAGGTTTCGGTTTCATTACTCAAGATAACGGCGGCGC
TGACGTATTCGTTCACTTCCGTGCTATCGCAACTGAAGGTTTCAAAACTCTGAAAGAAGGCCAAGCGGTAACTTTCACTG
TTGAACAAGGTCAAAAAGGCCCACAAGCTGCAGACGTTACTCCAGCTTAA

Upstream 100 bases:

>100_bases
GAAGCTTTTTATACATATGTTTTACCTCAAATAAATAATTCTTTATGGCTACAACTTCGCATTATGCGAATTATTTAATT
TAAAAAAATTAGGATTTATT

Downstream 100 bases:

>100_bases
TTCGAATTTTTCGAATAGAATTTTTAAAAATGCTGACTTCGGTCAGCATTTTTTTTATCTCGATTTTGTCTATAGACTAG
ACAGATATAAAAAAAGAAGC

Product: cold shock protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MSKSTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIATEGFKTLKEGQAVTFTVEQGQKGPQAADVTPA

Sequences:

>Translated_69_residues
MSKSTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIATEGFKTLKEGQAVTFTVEQGQKGPQAADVTPA
>Mature_68_residues
SKSTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIATEGFKTLKEGQAVTFTVEQGQKGPQAADVTPA

Specific function: Binds To And Stimulates The Transcription Of The CCAAT- Containing, Cold-Shock-Inducible Promoters Of The H-Ns And Gyra Proteins. Binds Also To The Inverted Repeat 5'-ATTGG-3'. [C]

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Escherichia coli, GI1789979, Length=65, Percent_Identity=66.1538461538461, Blast_Score=94, Evalue=2e-21,
Organism=Escherichia coli, GI2367114, Length=65, Percent_Identity=63.0769230769231, Blast_Score=91, Evalue=2e-20,
Organism=Escherichia coli, GI1786841, Length=66, Percent_Identity=66.6666666666667, Blast_Score=89, Evalue=5e-20,
Organism=Escherichia coli, GI1788126, Length=67, Percent_Identity=64.1791044776119, Blast_Score=86, Evalue=4e-19,
Organism=Escherichia coli, GI1787839, Length=65, Percent_Identity=60, Blast_Score=86, Evalue=6e-19,
Organism=Escherichia coli, GI1787834, Length=66, Percent_Identity=60.6060606060606, Blast_Score=82, Evalue=5e-18,
Organism=Escherichia coli, GI1787107, Length=63, Percent_Identity=52.3809523809524, Blast_Score=75, Evalue=7e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7422; Mature: 7291

Theoretical pI: Translated: 5.76; Mature: 5.76

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKSTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIATEGFKTLKEGQAVTFTVEQGQKG
CCCCCCEEEEECCCCCCEEEEECCCCCEEEEEEEEEHHHHHHHHHCCCEEEEEECCCCCC
PQAADVTPA
CCCCCCCCC
>Mature Secondary Structure 
SKSTGIVKWFNEEKGFGFITQDNGGADVFVHFRAIATEGFKTLKEGQAVTFTVEQGQKG
CCCCCEEEEECCCCCCEEEEECCCCCEEEEEEEEEHHHHHHHHHCCCEEEEEECCCCCC
PQAADVTPA
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10483731 [H]