| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is ilvA [H]
Identifier: 59713167
GI number: 59713167
Start: 2882341
End: 2883873
Strand: Direct
Name: ilvA [H]
Synonym: VF_2560
Alternate gene names: 59713167
Gene position: 2882341-2883873 (Clockwise)
Preceding gene: 59713166
Following gene: 59713168
Centisome position: 99.48
GC content: 40.9
Gene sequence:
>1533_bases ATGAGCAACTCTTCATATCAAACTGGCGCAGAATATCTGCGTCAGATCTTACGAGCACCAATCTATGAAGTGGCAACAGT AACACCACTTCAAGATATGCCTCGTTTATCTGAGCGCATTAACAACCGAGTTCAGTTAAAGCGAGAAGACCGTCAACCGG TTCACTCCTTTAAACTTCGTGGTGCTTACAATATGGTTGCAAATCTAACCCAAGAGCAAAAAAATGCTGGGGTTATTGCT GCATCTGCTGGTAATCACGCTCAAGGTATGGCGCTTTCAGGAACCAAGCTGGGCATTCAAACGACAATAGTGATGCCCAA AACGACACCGGATATCAAAGTTGAAGCCGTAAAAGGTTTTGGTGGAAATGTGGTTCTACATGGCAGTAATTTCGATGAAG CCAAAGCAGAAGCAGAACGTTTATCACAACTCCACGGTTATACTTTTGTACCTCCGTTTGATCACCCACTGGTGATTGCA GGTCAAGGAACAATAGGAATGGAGATGCTGCAACAAAATGGTCATCTCGATTATATCTTTGTACCTGTTGGTGGTGGTGG TTTAGCTGCTGGTATTGCAGTGCTAATAAAACAACTCATGCCTGAAATAAAAGTTATCGCTGTTGAGCCTGAAGACTCTT CTTGTTTAAAAGCGGCTTTAGATGCTGGTGAGCCTGTCATTCTTGATCAAGTGAGTATGTTTGCCGATGGTGTCGCTGTT AAACGCATTGGTGATGAAACTTTCCGTCTATGTCAAAAATACCTTGATGGCCATATCAGCGTATCAAGTGATGAAATTTG TGCAGCGGTAAAAGATATTTTTGAAGATACAAGAGCGATTGCAGAACCCTCTGGTGCATTGGCATTAGCTGGTCTGAAAA AATTTGCAGATCAACATCAATTAGAAAACAAACAACTAGGAACCGTACTTTCTGGTGCAAATACTAACTTCCATGGTTTA CGTTATGTATCTGAGCGCTGTGAGTTAGGTGAAAAACGAGAAGGGCTATTGGCTGTAACGATTCCGGAACGTCAGGGCGC TTTCTTTGAATTTTGTAATCTAATTGGTGGCAGAGCTGTTACTGAATTTAACTACCGCTATAACGACGATAAGCTAGCTA ACATTTTTGTTGGTGTTCGCTTACAAGAAGGGCAAGAAGAGCTTGATAACATCATTAATGATCTACAAAAGGGAGAATAC CCGGTTGTTGATTTATCTGATGATGAAATGGCTAAGCTGCATATACGTTATATGATTGGTGGTAAACCATCAAAAACAAT TCAAGAACGTTTATACAGTTTTGAATTTCCAGAATACCCTGGAGCGCTCGTTCGCTTCTTAAGTACTCTAGGTACTCACT GGAATATCAGTCTCTTCAATTATCGTAACCACGGTGCAGATTATGGACGTGTGTTATGTGGTTTTGAGCTAACTGATTCT GATCTTGCTAGTTTTTCAAAACACCTTGAAGAGCTTGGTTATCAATGGAAAGATGAGACAGATAATCTAGCTTATCGATT CTTTTTATCCTAA
Upstream 100 bases:
>100_bases CAACGTGAAGTCTCTTTTGCATTAAAAGCCTATGCAAGTATGGCAACAAGTGCAGATAAAGGTGCTGTTCGTGATAAATC TAAGTTAGAAGGGTAAGCCT
Downstream 100 bases:
>100_bases GACCGTACGGCGTAATAAGGCTAATTAAAATTTAGCCTTATTTTCATTCAAATTTGAAATTATGCTATACAATCGGTTAA AAAATGCTATTATTTTGCTC
Product: threonine dehydratase
Products: NA
Alternate protein names: Threonine deaminase [H]
Number of amino acids: Translated: 510; Mature: 509
Protein sequence:
>510_residues MSNSSYQTGAEYLRQILRAPIYEVATVTPLQDMPRLSERINNRVQLKREDRQPVHSFKLRGAYNMVANLTQEQKNAGVIA ASAGNHAQGMALSGTKLGIQTTIVMPKTTPDIKVEAVKGFGGNVVLHGSNFDEAKAEAERLSQLHGYTFVPPFDHPLVIA GQGTIGMEMLQQNGHLDYIFVPVGGGGLAAGIAVLIKQLMPEIKVIAVEPEDSSCLKAALDAGEPVILDQVSMFADGVAV KRIGDETFRLCQKYLDGHISVSSDEICAAVKDIFEDTRAIAEPSGALALAGLKKFADQHQLENKQLGTVLSGANTNFHGL RYVSERCELGEKREGLLAVTIPERQGAFFEFCNLIGGRAVTEFNYRYNDDKLANIFVGVRLQEGQEELDNIINDLQKGEY PVVDLSDDEMAKLHIRYMIGGKPSKTIQERLYSFEFPEYPGALVRFLSTLGTHWNISLFNYRNHGADYGRVLCGFELTDS DLASFSKHLEELGYQWKDETDNLAYRFFLS
Sequences:
>Translated_510_residues MSNSSYQTGAEYLRQILRAPIYEVATVTPLQDMPRLSERINNRVQLKREDRQPVHSFKLRGAYNMVANLTQEQKNAGVIA ASAGNHAQGMALSGTKLGIQTTIVMPKTTPDIKVEAVKGFGGNVVLHGSNFDEAKAEAERLSQLHGYTFVPPFDHPLVIA GQGTIGMEMLQQNGHLDYIFVPVGGGGLAAGIAVLIKQLMPEIKVIAVEPEDSSCLKAALDAGEPVILDQVSMFADGVAV KRIGDETFRLCQKYLDGHISVSSDEICAAVKDIFEDTRAIAEPSGALALAGLKKFADQHQLENKQLGTVLSGANTNFHGL RYVSERCELGEKREGLLAVTIPERQGAFFEFCNLIGGRAVTEFNYRYNDDKLANIFVGVRLQEGQEELDNIINDLQKGEY PVVDLSDDEMAKLHIRYMIGGKPSKTIQERLYSFEFPEYPGALVRFLSTLGTHWNISLFNYRNHGADYGRVLCGFELTDS DLASFSKHLEELGYQWKDETDNLAYRFFLS >Mature_509_residues SNSSYQTGAEYLRQILRAPIYEVATVTPLQDMPRLSERINNRVQLKREDRQPVHSFKLRGAYNMVANLTQEQKNAGVIAA SAGNHAQGMALSGTKLGIQTTIVMPKTTPDIKVEAVKGFGGNVVLHGSNFDEAKAEAERLSQLHGYTFVPPFDHPLVIAG QGTIGMEMLQQNGHLDYIFVPVGGGGLAAGIAVLIKQLMPEIKVIAVEPEDSSCLKAALDAGEPVILDQVSMFADGVAVK RIGDETFRLCQKYLDGHISVSSDEICAAVKDIFEDTRAIAEPSGALALAGLKKFADQHQLENKQLGTVLSGANTNFHGLR YVSERCELGEKREGLLAVTIPERQGAFFEFCNLIGGRAVTEFNYRYNDDKLANIFVGVRLQEGQEELDNIINDLQKGEYP VVDLSDDEMAKLHIRYMIGGKPSKTIQERLYSFEFPEYPGALVRFLSTLGTHWNISLFNYRNHGADYGRVLCGFELTDSD LASFSKHLEELGYQWKDETDNLAYRFFLS
Specific function: Catalyzes the formation of alpha-ketobutyrate from threonine in a two-step reaction. The first step is a dehydration of threonine, followed by rehydration and liberation of ammonia. Deaminates L-threonine, but also L-serine to a lesser extent [H]
COG id: COG1171
COG function: function code E; Threonine dehydratase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the serine/threonine dehydratase family [H]
Homologues:
Organism=Homo sapiens, GI11345492, Length=296, Percent_Identity=33.445945945946, Blast_Score=149, Evalue=8e-36, Organism=Homo sapiens, GI19923959, Length=273, Percent_Identity=32.2344322344322, Blast_Score=102, Evalue=8e-22, Organism=Homo sapiens, GI33469958, Length=325, Percent_Identity=28, Blast_Score=100, Evalue=6e-21, Organism=Escherichia coli, GI1790207, Length=502, Percent_Identity=69.9203187250996, Blast_Score=709, Evalue=0.0, Organism=Escherichia coli, GI1789505, Length=295, Percent_Identity=39.3220338983051, Blast_Score=187, Evalue=2e-48, Organism=Caenorhabditis elegans, GI71991565, Length=329, Percent_Identity=33.1306990881459, Blast_Score=155, Evalue=7e-38, Organism=Caenorhabditis elegans, GI17537387, Length=321, Percent_Identity=35.5140186915888, Blast_Score=153, Evalue=2e-37, Organism=Caenorhabditis elegans, GI17508781, Length=292, Percent_Identity=34.9315068493151, Blast_Score=144, Evalue=9e-35, Organism=Saccharomyces cerevisiae, GI6320930, Length=514, Percent_Identity=49.0272373540856, Blast_Score=469, Evalue=1e-133, Organism=Saccharomyces cerevisiae, GI6322631, Length=306, Percent_Identity=36.2745098039216, Blast_Score=185, Evalue=2e-47, Organism=Saccharomyces cerevisiae, GI6319788, Length=264, Percent_Identity=25.3787878787879, Blast_Score=81, Evalue=4e-16, Organism=Drosophila melanogaster, GI21355833, Length=310, Percent_Identity=34.5161290322581, Blast_Score=152, Evalue=4e-37, Organism=Drosophila melanogaster, GI24645328, Length=251, Percent_Identity=30.6772908366534, Blast_Score=100, Evalue=2e-21,
Paralogues:
None
Copy number: 1344 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 800 Molecules/Cell In: Glucose minimal media [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001926 - InterPro: IPR000634 - InterPro: IPR005787 - InterPro: IPR001721 [H]
Pfam domain/function: PF00291 PALP; PF00585 Thr_dehydrat_C [H]
EC number: =4.3.1.19 [H]
Molecular weight: Translated: 56409; Mature: 56278
Theoretical pI: Translated: 5.25; Mature: 5.25
Prosite motif: PS00165 DEHYDRATASE_SER_THR
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 1.2 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 3.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNSSYQTGAEYLRQILRAPIYEVATVTPLQDMPRLSERINNRVQLKREDRQPVHSFKLR CCCCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHEECC GAYNMVANLTQEQKNAGVIAASAGNHAQGMALSGTKLGIQTTIVMPKTTPDIKVEAVKGF CHHHHHHHHHHHHCCCCEEEECCCCCCCCEEECCCEECEEEEEEECCCCCCEEEEEEECC GGNVVLHGSNFDEAKAEAERLSQLHGYTFVPPFDHPLVIAGQGTIGMEMLQQNGHLDYIF CCCEEEECCCCCHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCHHHHHHHCCCCEEEEE VPVGGGGLAAGIAVLIKQLMPEIKVIAVEPEDSSCLKAALDAGEPVILDQVSMFADGVAV EEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEEHHHHHHHHCCHHH KRIGDETFRLCQKYLDGHISVSSDEICAAVKDIFEDTRAIAEPSGALALAGLKKFADQHQ HHCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH LENKQLGTVLSGANTNFHGLRYVSERCELGEKREGLLAVTIPERQGAFFEFCNLIGGRAV HCCHHHHHEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEE TEFNYRYNDDKLANIFVGVRLQEGQEELDNIINDLQKGEYPVVDLSDDEMAKLHIRYMIG EEECCEECCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEEEEC GKPSKTIQERLYSFEFPEYPGALVRFLSTLGTHWNISLFNYRNHGADYGRVLCGFELTDS CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCHH DLASFSKHLEELGYQWKDETDNLAYRFFLS HHHHHHHHHHHCCCCCCCCCCCEEEEEEEC >Mature Secondary Structure SNSSYQTGAEYLRQILRAPIYEVATVTPLQDMPRLSERINNRVQLKREDRQPVHSFKLR CCCCCHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHHHCCCEEEECCCCCCHHHEECC GAYNMVANLTQEQKNAGVIAASAGNHAQGMALSGTKLGIQTTIVMPKTTPDIKVEAVKGF CHHHHHHHHHHHHCCCCEEEECCCCCCCCEEECCCEECEEEEEEECCCCCCEEEEEEECC GGNVVLHGSNFDEAKAEAERLSQLHGYTFVPPFDHPLVIAGQGTIGMEMLQQNGHLDYIF CCCEEEECCCCCHHHHHHHHHHHHCCCEECCCCCCCEEEECCCCHHHHHHHCCCCEEEEE VPVGGGGLAAGIAVLIKQLMPEIKVIAVEPEDSSCLKAALDAGEPVILDQVSMFADGVAV EEECCCHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHHCCCCCEEHHHHHHHHCCHHH KRIGDETFRLCQKYLDGHISVSSDEICAAVKDIFEDTRAIAEPSGALALAGLKKFADQHQ HHCCHHHHHHHHHHCCCCEEECCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH LENKQLGTVLSGANTNFHGLRYVSERCELGEKREGLLAVTIPERQGAFFEFCNLIGGRAV HCCHHHHHEEECCCCCCHHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHHHHHHCCCEE TEFNYRYNDDKLANIFVGVRLQEGQEELDNIINDLQKGEYPVVDLSDDEMAKLHIRYMIG EEECCEECCCCEEEEEEEEEECCCHHHHHHHHHHHHCCCCCEEECCCCCEEEEEEEEEEC GKPSKTIQERLYSFEFPEYPGALVRFLSTLGTHWNISLFNYRNHGADYGRVLCGFELTDS CCCHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCEEEEEEEECCCCCCCCEEEEEEECCHH DLASFSKHLEELGYQWKDETDNLAYRFFLS HHHHHHHHHHHCCCCCCCCCCCEEEEEEEC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 3315862; 3550695; 1379743; 9278503; 3003115; 2473940; 9562556 [H]