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The map label for this gene is yrdA [H]

Identifier: 59713140

GI number: 59713140

Start: 2855789

End: 2856334

Strand: Direct

Name: yrdA [H]

Synonym: VF_2533

Alternate gene names: 59713140

Gene position: 2855789-2856334 (Clockwise)

Preceding gene: 59713136

Following gene: 59713144

Centisome position: 98.56

GC content: 35.53

Gene sequence:

>546_bases
ATGATTTCTTCATTACGACGCTATAAATCAAACTTTCCTTCAATCGGCTCTAATACCTATATAGATACCTCTTCTGTATT
AATTGGAGAAATTACTATTGGCCAAGACTCTAGTGTTTGGCCTTTGGTTGTTGCTCGAGGTGATGTAAATAGTATTTCTA
TTGGCGATAGAACAAATATTCAAGATGGTTCAGTTTTGCATGTTACCCATAAAAACCCTGAGAACCCAAAAGGTGCACCT
TTAGTTATTGGCAATGATGTCACTATTGGTCACAAAGTTATGTTGCATGGTTGCGTAATTGAAGACCGAGTTCTTGTTGG
AATGGGAAGCATTATTTTAGACAACGCTTATATTGAAGCTGATGTAATGATTGGTGCTGGTTCTCTTGTTCCACCAAACA
AGCGTCTTGAAAGTGGCTACCTTTATATAGGTAGCCCTGTAAAACAAGTTCGCCCTCTATCTATAGAGGAAATTGCATCA
CTTAAAAAATCTGCATTAAATTACGTTAATTTTAAGAATGACTATATAGAAGAAGAAATTAATTAA

Upstream 100 bases:

>100_bases
TTTTTTTGTTTTTATGGTTAAAGTCCATACAAATCGGTGCTAAATTATCTTTTATAACGCATATTATTAACACTAAATTA
TCATTTTTGAGGTTTATTCT

Downstream 100 bases:

>100_bases
TTTCAATCTCTCCTGAAGCATTGAATTCTTCATCTTCGATCAATGCTTCAGCTTTCTCTTCTATATCAAAGCGTAACTGG
TTAAAAACCTCATTCGCTTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 181; Mature: 181

Protein sequence:

>181_residues
MISSLRRYKSNFPSIGSNTYIDTSSVLIGEITIGQDSSVWPLVVARGDVNSISIGDRTNIQDGSVLHVTHKNPENPKGAP
LVIGNDVTIGHKVMLHGCVIEDRVLVGMGSIILDNAYIEADVMIGAGSLVPPNKRLESGYLYIGSPVKQVRPLSIEEIAS
LKKSALNYVNFKNDYIEEEIN

Sequences:

>Translated_181_residues
MISSLRRYKSNFPSIGSNTYIDTSSVLIGEITIGQDSSVWPLVVARGDVNSISIGDRTNIQDGSVLHVTHKNPENPKGAP
LVIGNDVTIGHKVMLHGCVIEDRVLVGMGSIILDNAYIEADVMIGAGSLVPPNKRLESGYLYIGSPVKQVRPLSIEEIAS
LKKSALNYVNFKNDYIEEEIN
>Mature_181_residues
MISSLRRYKSNFPSIGSNTYIDTSSVLIGEITIGQDSSVWPLVVARGDVNSISIGDRTNIQDGSVLHVTHKNPENPKGAP
LVIGNDVTIGHKVMLHGCVIEDRVLVGMGSIILDNAYIEADVMIGAGSLVPPNKRLESGYLYIGSPVKQVRPLSIEEIAS
LKKSALNYVNFKNDYIEEEIN

Specific function: Unknown

COG id: COG0663

COG function: function code R; Carbonic anhydrases/acetyltransferases, isoleucine patch superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gamma-class carbonic anhydrase family [H]

Homologues:

Organism=Escherichia coli, GI87082240, Length=178, Percent_Identity=65.1685393258427, Blast_Score=239, Evalue=5e-65,
Organism=Escherichia coli, GI1787667, Length=156, Percent_Identity=35.2564102564103, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI87081681, Length=164, Percent_Identity=29.8780487804878, Blast_Score=86, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011004 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 19665; Mature: 19665

Theoretical pI: Translated: 5.63; Mature: 5.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISSLRRYKSNFPSIGSNTYIDTSSVLIGEITIGQDSSVWPLVVARGDVNSISIGDRTNI
CCCHHHHHHHCCCCCCCCCEEECCCEEEEEEEECCCCCCCEEEEECCCCCEEECCCCCCC
QDGSVLHVTHKNPENPKGAPLVIGNDVTIGHKVMLHGCVIEDRVLVGMGSIILDNAYIEA
CCCCEEEEEECCCCCCCCCCEEEECCCEECCEEEEEEEEECCEEEEECCCEEEECEEEEE
DVMIGAGSLVPPNKRLESGYLYIGSPVKQVRPLSIEEIASLKKSALNYVNFKNDYIEEEI
EEEEECCCCCCCCCCCCCCEEEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCC
N
C
>Mature Secondary Structure
MISSLRRYKSNFPSIGSNTYIDTSSVLIGEITIGQDSSVWPLVVARGDVNSISIGDRTNI
CCCHHHHHHHCCCCCCCCCEEECCCEEEEEEEECCCCCCCEEEEECCCCCEEECCCCCCC
QDGSVLHVTHKNPENPKGAPLVIGNDVTIGHKVMLHGCVIEDRVLVGMGSIILDNAYIEA
CCCCEEEEEECCCCCCCCCCEEEECCCEECCEEEEEEEEECCEEEEECCCEEEECEEEEE
DVMIGAGSLVPPNKRLESGYLYIGSPVKQVRPLSIEEIASLKKSALNYVNFKNDYIEEEI
EEEEECCCCCCCCCCCCCCEEEECCCHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503; 10493123 [H]