| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is yijD [H]
Identifier: 59713044
GI number: 59713044
Start: 2737605
End: 2737979
Strand: Reverse
Name: yijD [H]
Synonym: VF_2437
Alternate gene names: 59713044
Gene position: 2737979-2737605 (Counterclockwise)
Preceding gene: 172087777
Following gene: 59713042
Centisome position: 94.49
GC content: 37.07
Gene sequence:
>375_bases ATGACACATGAAAATAGTAGAAATGAACGAAAGACATTAGTGCTATCAGTGGTGGCAGGTCTTTGTTTAAATGCCGTTTG GGTTGGATTAACAGTAACTGAAGTTGCTTTCTCAATTTTTCCGATTATTGCATTGGTTCTAGCGGCTCAAGGTTTATATC AAGAATACTTACGACCGCCAGTGAGTGAAGATACTCCGCTTATTGCAGTGGCTTGTTTTTTTGTAGGATTGTTTGGTCAT TCAGCATTAGCAAAAGCACAATATCCAGAAGCGGGTTCTAATTTCTTTTCGATTCTAGTTGCTCTGGCTTTGTTACTTTG GATTGGTGTAAAAATGGGTATTTTGAAAAAGAAAGATACTCACACAGAAATATAA
Upstream 100 bases:
>100_bases GAATGCTCTCTAAAGGGGCCTACTGGTACCGTAAAGAGAATGAAAAATAGAATTTAGGTACATTGTTCGCAGTGAATCAA TGTCTGTATGAGGTAAAAAC
Downstream 100 bases:
>100_bases ATAACCGTTCATAAAAAAGGCTCAGAACATTACGCTCTGAGCCTTTTTTTTAAGTTTATTTTCTTTCTAAGAAAACGCCT GCTTCCATATGGTGTGTGTA
Product: hypothetical protein
Products: AMP; diphosphate; acetyl-CoA
Alternate protein names: NA
Number of amino acids: Translated: 124; Mature: 123
Protein sequence:
>124_residues MTHENSRNERKTLVLSVVAGLCLNAVWVGLTVTEVAFSIFPIIALVLAAQGLYQEYLRPPVSEDTPLIAVACFFVGLFGH SALAKAQYPEAGSNFFSILVALALLLWIGVKMGILKKKDTHTEI
Sequences:
>Translated_124_residues MTHENSRNERKTLVLSVVAGLCLNAVWVGLTVTEVAFSIFPIIALVLAAQGLYQEYLRPPVSEDTPLIAVACFFVGLFGH SALAKAQYPEAGSNFFSILVALALLLWIGVKMGILKKKDTHTEI >Mature_123_residues THENSRNERKTLVLSVVAGLCLNAVWVGLTVTEVAFSIFPIIALVLAAQGLYQEYLRPPVSEDTPLIAVACFFVGLFGHS ALAKAQYPEAGSNFFSILVALALLLWIGVKMGILKKKDTHTEI
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
Organism=Escherichia coli, GI1790402, Length=115, Percent_Identity=39.1304347826087, Blast_Score=93, Evalue=4e-21,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR009867 - ProDom: PD076479 [H]
Pfam domain/function: PF07226 DUF1422 [H]
EC number: 6.2.1.1
Molecular weight: Translated: 13488; Mature: 13357
Theoretical pI: Translated: 7.51; Mature: 7.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 3.2 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 2.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTHENSRNERKTLVLSVVAGLCLNAVWVGLTVTEVAFSIFPIIALVLAAQGLYQEYLRPP CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VSEDTPLIAVACFFVGLFGHSALAKAQYPEAGSNFFSILVALALLLWIGVKMGILKKKDT CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC HTEI CCCC >Mature Secondary Structure THENSRNERKTLVLSVVAGLCLNAVWVGLTVTEVAFSIFPIIALVLAAQGLYQEYLRPP CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC VSEDTPLIAVACFFVGLFGHSALAKAQYPEAGSNFFSILVALALLLWIGVKMGILKKKDT CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCC HTEI CCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; acetate; CoA
Specific reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]