Click here to switch to the map view.

The map label for this gene is rsd [H]

Identifier: 59713011

GI number: 59713011

Start: 2691014

End: 2691496

Strand: Direct

Name: rsd [H]

Synonym: VF_2404

Alternate gene names: 59713011

Gene position: 2691014-2691496 (Clockwise)

Preceding gene: 59713007

Following gene: 59713016

Centisome position: 92.87

GC content: 36.85

Gene sequence:

>483_bases
ATGCTTACTAGACTAAATCAATTCCAAGCACAATGGGGTGGCAATAGCGACGTTATTGATCACTGGCTATCTACTCGACA
GGATTTATTAGTTGAGTATTGCAAGTTAGCTGGTTTGCCTCCATTTGACTCATCAGTTTCCACTCTTCCTGATTTTGCGT
CAATTCAATCATTTACACAGCATTTAATTGATTATATTTCAGAAGGCCATTTCAAAATTTACAACATGGTAATGGAGAAA
TGGGATGCGACAGGCTTTTCTCCTACTGAAGAAATGAGCCAATTGTATGCCCATATAACAAAAACAACTGACCCGATCCT
TAACTTCACAGATAAGTACTCAAAAGATGATGAGGAATTATTATTAAGTGATTTCGACAATGATTTTTCAACACTAGGAG
AGATTATTGAAGCAAGATTTGAGTTAGAGGATGGATTAATTGAACAAATATCCAGCAGTTTAGCACACCCTCCTGGAGCT
TAA

Upstream 100 bases:

>100_bases
GAGTATATACCCAAACAATTTTCACTGAAACCACACTCAGATTCACTCGGGTATAGATATAGAACTTTGGAATATTGCTT
GCAACTACAAGGATATCGTT

Downstream 100 bases:

>100_bases
TGATTAAATAGAGTGTTTGACCCAAACACTCTATTTAATTTTATAAAATTTGATTGGTTTCAGAAGCGTATTTTTTAAAT
ATCGGATTATTTCTAGTATC

Product: anti-RNA polymerase sigma 70 factor

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 160

Protein sequence:

>160_residues
MLTRLNQFQAQWGGNSDVIDHWLSTRQDLLVEYCKLAGLPPFDSSVSTLPDFASIQSFTQHLIDYISEGHFKIYNMVMEK
WDATGFSPTEEMSQLYAHITKTTDPILNFTDKYSKDDEELLLSDFDNDFSTLGEIIEARFELEDGLIEQISSSLAHPPGA

Sequences:

>Translated_160_residues
MLTRLNQFQAQWGGNSDVIDHWLSTRQDLLVEYCKLAGLPPFDSSVSTLPDFASIQSFTQHLIDYISEGHFKIYNMVMEK
WDATGFSPTEEMSQLYAHITKTTDPILNFTDKYSKDDEELLLSDFDNDFSTLGEIIEARFELEDGLIEQISSSLAHPPGA
>Mature_160_residues
MLTRLNQFQAQWGGNSDVIDHWLSTRQDLLVEYCKLAGLPPFDSSVSTLPDFASIQSFTQHLIDYISEGHFKIYNMVMEK
WDATGFSPTEEMSQLYAHITKTTDPILNFTDKYSKDDEELLLSDFDNDFSTLGEIIEARFELEDGLIEQISSSLAHPPGA

Specific function: Has binding activity to the major sigma subunit of RNA polymerase. May be involved in replacement of the RNA polymerase sigma subunit from sigma-70 to sigma-S during the transition from exponential growth to the stationary phase [H]

COG id: COG3160

COG function: function code K; Regulator of sigma D

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Rsd/AlgQ family [H]

Homologues:

Organism=Escherichia coli, GI1790428, Length=163, Percent_Identity=31.2883435582822, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007448 [H]

Pfam domain/function: PF04353 Rsd_AlgQ [H]

EC number: NA

Molecular weight: Translated: 18175; Mature: 18175

Theoretical pI: Translated: 4.04; Mature: 4.04

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLTRLNQFQAQWGGNSDVIDHWLSTRQDLLVEYCKLAGLPPFDSSVSTLPDFASIQSFTQ
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHH
HLIDYISEGHFKIYNMVMEKWDATGFSPTEEMSQLYAHITKTTDPILNFTDKYSKDDEEL
HHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHH
LLSDFDNDFSTLGEIIEARFELEDGLIEQISSSLAHPPGA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLTRLNQFQAQWGGNSDVIDHWLSTRQDLLVEYCKLAGLPPFDSSVSTLPDFASIQSFTQ
CCCCHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHH
HLIDYISEGHFKIYNMVMEKWDATGFSPTEEMSQLYAHITKTTDPILNFTDKYSKDDEEL
HHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHCCCCHHHH
LLSDFDNDFSTLGEIIEARFELEDGLIEQISSSLAHPPGA
HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA