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The map label for this gene is appC [H]

Identifier: 59712748

GI number: 59712748

Start: 2394000

End: 2395025

Strand: Direct

Name: appC [H]

Synonym: VF_2141

Alternate gene names: 59712748

Gene position: 2394000-2395025 (Clockwise)

Preceding gene: 59712747

Following gene: 59712749

Centisome position: 82.62

GC content: 43.27

Gene sequence:

>1026_bases
ATGAAAGGCTTAATTAAACTACTTTCAGGTAACCCTAAATCTCTGTTTGGTTTAGGTATCCTATTCATGTTTATCTTCAT
TGCTGTATTCGCACCATTCCTTAGCGACCATGCTCCAGATAAACGTACTGGTAAACCACATGAATACCCAAGCTTTGTGG
TAAACGCTGCTGAGAATAATCCTGAAGGATGGGTTGCCGAAAACCTAGCAACCGACCGCCGTACATTACTGATGTCTAAA
AAAGCAGATCACGTAATGGGTACAACTCGTATGGGTCGTGACGTTTGGTCTCAACTTGCACACGGTGCACGCGTATCACT
TGCTGTTGGCTTTGGTGCTGGTGTTGTTGTTTGTTTCTTAGCAACCATCATCGGTGTTTCTGCGGGTTACTTTGGCGGTA
AAGTTGATGATGTATTAACAGCAGCAATGAACATCATGCTTGTTATACCTCAATATCCACTACTATTCGTTCTTGCAGCA
TTTATTGGTGAGGCTGGGCCAATGACCATTGCCCTCATTATCGGTTGTACCTCCTGGGCTTGGGGCGCACGTGTAATTCG
TTCTCAAACCTTAGCACTACGTGAAAAAGAATTCGTTAAGGCAGCAGAAGTTCTTGGTGAATCAGCATGGCGCATTATCT
TTGTTGAGATTCTTCCAAACCTTATCTCTATCGTTGGTGCAAGTTTCATTGGCTCAGTGATGTACGCAATCATGATGGAA
GCAACCATCTCGTTCTTAGGTCTTGGTGACCCAAGTACAATCAGTTGGGGCATCATGCTTTACAACGTACAAACATCATC
ATCAATTCTAATTGGCGCATGGTGGGAACTGATTGCTCCTTGTATGGCTCTGACGCTACTAGCAATTGGTCTAGCAATGC
TTAACTTTGCGGTAGATGAAATTGCGAACCCTCAATTACGTTCTCATAAAGGTATGAAACGTTGGAAGCAAATGGCTGCA
CAAGATACCGAAGAGCGTAAGCCAGATTTAGGTAAACCAGAATTAAATTGGAACAGGGAAGATTAA

Upstream 100 bases:

>100_bases
AGCTGCTTATCATGACTCTGTTCATGCTGTTCTTTAACCTTCTTGCTGACATGTTATACGTTGTTCTAGACCCTCGCCTA
CGCAAGGGAGGAAAATAATA

Downstream 100 bases:

>100_bases
TATGACTGACCCACAAATTTCTATCCGCAATCTGTGTGTGGATTACATTACTGACGCTGGTGATGTACGAGCTGTAAACA
ATGTGAGTTTTGACATTGGT

Product: chitooligosaccharide transport system permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 341

Protein sequence:

>341_residues
MKGLIKLLSGNPKSLFGLGILFMFIFIAVFAPFLSDHAPDKRTGKPHEYPSFVVNAAENNPEGWVAENLATDRRTLLMSK
KADHVMGTTRMGRDVWSQLAHGARVSLAVGFGAGVVVCFLATIIGVSAGYFGGKVDDVLTAAMNIMLVIPQYPLLFVLAA
FIGEAGPMTIALIIGCTSWAWGARVIRSQTLALREKEFVKAAEVLGESAWRIIFVEILPNLISIVGASFIGSVMYAIMME
ATISFLGLGDPSTISWGIMLYNVQTSSSILIGAWWELIAPCMALTLLAIGLAMLNFAVDEIANPQLRSHKGMKRWKQMAA
QDTEERKPDLGKPELNWNRED

Sequences:

>Translated_341_residues
MKGLIKLLSGNPKSLFGLGILFMFIFIAVFAPFLSDHAPDKRTGKPHEYPSFVVNAAENNPEGWVAENLATDRRTLLMSK
KADHVMGTTRMGRDVWSQLAHGARVSLAVGFGAGVVVCFLATIIGVSAGYFGGKVDDVLTAAMNIMLVIPQYPLLFVLAA
FIGEAGPMTIALIIGCTSWAWGARVIRSQTLALREKEFVKAAEVLGESAWRIIFVEILPNLISIVGASFIGSVMYAIMME
ATISFLGLGDPSTISWGIMLYNVQTSSSILIGAWWELIAPCMALTLLAIGLAMLNFAVDEIANPQLRSHKGMKRWKQMAA
QDTEERKPDLGKPELNWNRED
>Mature_341_residues
MKGLIKLLSGNPKSLFGLGILFMFIFIAVFAPFLSDHAPDKRTGKPHEYPSFVVNAAENNPEGWVAENLATDRRTLLMSK
KADHVMGTTRMGRDVWSQLAHGARVSLAVGFGAGVVVCFLATIIGVSAGYFGGKVDDVLTAAMNIMLVIPQYPLLFVLAA
FIGEAGPMTIALIIGCTSWAWGARVIRSQTLALREKEFVKAAEVLGESAWRIIFVEILPNLISIVGASFIGSVMYAIMME
ATISFLGLGDPSTISWGIMLYNVQTSSSILIGAWWELIAPCMALTLLAIGLAMLNFAVDEIANPQLRSHKGMKRWKQMAA
QDTEERKPDLGKPELNWNRED

Specific function: This protein is a component of an oligopeptide permease, a binding protein-dependent transport system. This APP system can completely substitute for the OPP system in both sporulation and genetic competence, though, unlike OPP, is incapable of transportin

COG id: COG1173

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787760, Length=307, Percent_Identity=28.3387622149837, Blast_Score=110, Evalue=1e-25,
Organism=Escherichia coli, GI1789889, Length=201, Percent_Identity=33.3333333333333, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1789964, Length=258, Percent_Identity=33.7209302325581, Blast_Score=92, Evalue=5e-20,
Organism=Escherichia coli, GI1787498, Length=227, Percent_Identity=34.3612334801762, Blast_Score=91, Evalue=8e-20,
Organism=Escherichia coli, GI1787054, Length=243, Percent_Identity=27.5720164609054, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 37193; Mature: 37193

Theoretical pI: Translated: 7.56; Mature: 7.56

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
5.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
5.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKGLIKLLSGNPKSLFGLGILFMFIFIAVFAPFLSDHAPDKRTGKPHEYPSFVVNAAENN
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEEECCCCC
PEGWVAENLATDRRTLLMSKKADHVMGTTRMGRDVWSQLAHGARVSLAVGFGAGVVVCFL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
ATIIGVSAGYFGGKVDDVLTAAMNIMLVIPQYPLLFVLAAFIGEAGPMTIALIIGCTSWA
HHHHHHHCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCHH
WGARVIRSQTLALREKEFVKAAEVLGESAWRIIFVEILPNLISIVGASFIGSVMYAIMME
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATISFLGLGDPSTISWGIMLYNVQTSSSILIGAWWELIAPCMALTLLAIGLAMLNFAVDE
HHHHHHCCCCCCCEEEEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IANPQLRSHKGMKRWKQMAAQDTEERKPDLGKPELNWNRED
HCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MKGLIKLLSGNPKSLFGLGILFMFIFIAVFAPFLSDHAPDKRTGKPHEYPSFVVNAAENN
CCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHEEECCCCC
PEGWVAENLATDRRTLLMSKKADHVMGTTRMGRDVWSQLAHGARVSLAVGFGAGVVVCFL
CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
ATIIGVSAGYFGGKVDDVLTAAMNIMLVIPQYPLLFVLAAFIGEAGPMTIALIIGCTSWA
HHHHHHHCCCCCCHHHHHHHHHHHHHEECCCHHHHHHHHHHHCCCCCCEEEEEEECCCHH
WGARVIRSQTLALREKEFVKAAEVLGESAWRIIFVEILPNLISIVGASFIGSVMYAIMME
HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
ATISFLGLGDPSTISWGIMLYNVQTSSSILIGAWWELIAPCMALTLLAIGLAMLNFAVDE
HHHHHHCCCCCCCEEEEEEEEEEECCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IANPQLRSHKGMKRWKQMAAQDTEERKPDLGKPELNWNRED
HCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7997159; 9384377 [H]