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The map label for this gene is dppB [C]

Identifier: 59712747

GI number: 59712747

Start: 2393011

End: 2393997

Strand: Direct

Name: dppB [C]

Synonym: VF_2140

Alternate gene names: 59712747

Gene position: 2393011-2393997 (Clockwise)

Preceding gene: 59712746

Following gene: 59712748

Centisome position: 82.59

GC content: 41.54

Gene sequence:

>987_bases
ATGGGATTTTTTCTAAGACGTTTATCGTTCTATTTTATTGCGTTGGTCGTTGCTGCAACGATTAACTTTATCATTCCGCG
AGCAATGCCAGGTGACCCTGTTGTCATGATGTTCGCTAATGCAACCACTCAGGTAACTCCTGAGCGTATTGAAGCAATGA
AACAATTGCTTGGCTTTGTTGATGGCCCTCTATATGAGCAATACTTTATCTACATCAAAAATATCCTAACTTGGGAATTA
GGTACTTCTATCAAATTCTATCCGCTAAGTGTAAATGATTTACTTGGTGGTGCATTTGGTTGGTCATTGTTCCTAGCAGG
TACTGCGGTAATTTTATCATTCTCTCTAGGTTCCATTCTTGGCATCTTTGCAGCATGGAAACGCGGTAGTGCTTACGATA
CCTTCATCTCTCCAGGGATGCTGGTTATCCAAGCGGTACCTCAAGTGGTTATTGCTATGTTAGCTATGTTTACCTTTGCT
GTCGGTTTGAAATGGTTCCCTACTGGCTACGCATATACTCCAGGCACCATTCCTGATTGGACAGACTGGGCATTCATTAA
AGATGTTGCTTATCACGCTATTCTTCCACTTTTTTGTGCGTCTATCGTTCAAATTGGTGGCTTCCTAATTAACATGCGTA
ACAACATGATTAACCTACTTGGTGAAGACTACATCACCATGGCTAAAGGTAAAGGCTTAAGCGAAAACCGCGTTGTATTT
AACTATGCAGCACGAAACGCAATGCTTCCGAGTGTTACCGCTCTATCAATGTCATTAGGTATGGCAATTGGTGGTCAGTT
AATCGTTGAAATTATCTTCAACTACCCAGGTCTTGGTTCTGTACTATTTAATGCAATCACTTCTCGTGACTACCAAGTTC
TTCAAGGTCAGCTGCTTATCATGACTCTGTTCATGCTGTTCTTTAACCTTCTTGCTGACATGTTATACGTTGTTCTAGAC
CCTCGCCTACGCAAGGGAGGAAAATAA

Upstream 100 bases:

>100_bases
CCTTCCCTACTAGCTAAAGGAATGGCGCTCGTCGTCAGGGGATTTTATGTCCTGATTTCCAGGTCAGGCAAACAATATCT
GGATGAGTAAGGTGTGAGTT

Downstream 100 bases:

>100_bases
TAATGAAAGGCTTAATTAAACTACTTTCAGGTAACCCTAAATCTCTGTTTGGTTTAGGTATCCTATTCATGTTTATCTTC
ATTGCTGTATTCGCACCATT

Product: chitooligosaccharide transport system permease protein

Products: ADP; phosphate; dipeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 328; Mature: 327

Protein sequence:

>328_residues
MGFFLRRLSFYFIALVVAATINFIIPRAMPGDPVVMMFANATTQVTPERIEAMKQLLGFVDGPLYEQYFIYIKNILTWEL
GTSIKFYPLSVNDLLGGAFGWSLFLAGTAVILSFSLGSILGIFAAWKRGSAYDTFISPGMLVIQAVPQVVIAMLAMFTFA
VGLKWFPTGYAYTPGTIPDWTDWAFIKDVAYHAILPLFCASIVQIGGFLINMRNNMINLLGEDYITMAKGKGLSENRVVF
NYAARNAMLPSVTALSMSLGMAIGGQLIVEIIFNYPGLGSVLFNAITSRDYQVLQGQLLIMTLFMLFFNLLADMLYVVLD
PRLRKGGK

Sequences:

>Translated_328_residues
MGFFLRRLSFYFIALVVAATINFIIPRAMPGDPVVMMFANATTQVTPERIEAMKQLLGFVDGPLYEQYFIYIKNILTWEL
GTSIKFYPLSVNDLLGGAFGWSLFLAGTAVILSFSLGSILGIFAAWKRGSAYDTFISPGMLVIQAVPQVVIAMLAMFTFA
VGLKWFPTGYAYTPGTIPDWTDWAFIKDVAYHAILPLFCASIVQIGGFLINMRNNMINLLGEDYITMAKGKGLSENRVVF
NYAARNAMLPSVTALSMSLGMAIGGQLIVEIIFNYPGLGSVLFNAITSRDYQVLQGQLLIMTLFMLFFNLLADMLYVVLD
PRLRKGGK
>Mature_327_residues
GFFLRRLSFYFIALVVAATINFIIPRAMPGDPVVMMFANATTQVTPERIEAMKQLLGFVDGPLYEQYFIYIKNILTWELG
TSIKFYPLSVNDLLGGAFGWSLFLAGTAVILSFSLGSILGIFAAWKRGSAYDTFISPGMLVIQAVPQVVIAMLAMFTFAV
GLKWFPTGYAYTPGTIPDWTDWAFIKDVAYHAILPLFCASIVQIGGFLINMRNNMINLLGEDYITMAKGKGLSENRVVFN
YAARNAMLPSVTALSMSLGMAIGGQLIVEIIFNYPGLGSVLFNAITSRDYQVLQGQLLIMTLFMLFFNLLADMLYVVLDP
RLRKGGK

Specific function: Probably part of an ABC transporter complex that could be involved in peptide import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1789965, Length=340, Percent_Identity=31.4705882352941, Blast_Score=157, Evalue=7e-40,
Organism=Escherichia coli, GI1787053, Length=325, Percent_Identity=30.1538461538462, Blast_Score=146, Evalue=2e-36,
Organism=Escherichia coli, GI1787497, Length=327, Percent_Identity=29.6636085626911, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1789888, Length=326, Percent_Identity=30.0613496932515, Blast_Score=134, Evalue=8e-33,
Organism=Escherichia coli, GI1788504, Length=365, Percent_Identity=26.8493150684932, Blast_Score=112, Evalue=4e-26,
Organism=Escherichia coli, GI1787761, Length=347, Percent_Identity=27.0893371757925, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787550, Length=281, Percent_Identity=23.1316725978648, Blast_Score=84, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 36323; Mature: 36191

Theoretical pI: Translated: 9.09; Mature: 9.09

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
4.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGFFLRRLSFYFIALVVAATINFIIPRAMPGDPVVMMFANATTQVTPERIEAMKQLLGFV
CCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
DGPLYEQYFIYIKNILTWELGTSIKFYPLSVNDLLGGAFGWSLFLAGTAVILSFSLGSIL
CCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFAAWKRGSAYDTFISPGMLVIQAVPQVVIAMLAMFTFAVGLKWFPTGYAYTPGTIPDW
HHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TDWAFIKDVAYHAILPLFCASIVQIGGFLINMRNNMINLLGEDYITMAKGKGLSENRVVF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCEEE
NYAARNAMLPSVTALSMSLGMAIGGQLIVEIIFNYPGLGSVLFNAITSRDYQVLQGQLLI
EEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHH
MTLFMLFFNLLADMLYVVLDPRLRKGGK
HHHHHHHHHHHHHHHHHHHCHHHHCCCC
>Mature Secondary Structure 
GFFLRRLSFYFIALVVAATINFIIPRAMPGDPVVMMFANATTQVTPERIEAMKQLLGFV
CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHH
DGPLYEQYFIYIKNILTWELGTSIKFYPLSVNDLLGGAFGWSLFLAGTAVILSFSLGSIL
CCHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GIFAAWKRGSAYDTFISPGMLVIQAVPQVVIAMLAMFTFAVGLKWFPTGYAYTPGTIPDW
HHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCC
TDWAFIKDVAYHAILPLFCASIVQIGGFLINMRNNMINLLGEDYITMAKGKGLSENRVVF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHCCCCCCCCCEEE
NYAARNAMLPSVTALSMSLGMAIGGQLIVEIIFNYPGLGSVLFNAITSRDYQVLQGQLLI
EEHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHH
MTLFMLFFNLLADMLYVVLDPRLRKGGK
HHHHHHHHHHHHHHHHHHHCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; dipeptides [Periplasm]; H2O [C]

Specific reaction: ATP + dipeptides [Periplasm] + H2O = ADP + phosphate + dipeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA