Click here to switch to the map view.

The map label for this gene is yebA [H]

Identifier: 59712738

GI number: 59712738

Start: 2376919

End: 2378232

Strand: Direct

Name: yebA [H]

Synonym: VF_2131

Alternate gene names: 59712738

Gene position: 2376919-2378232 (Clockwise)

Preceding gene: 59712737

Following gene: 59712742

Centisome position: 82.03

GC content: 38.2

Gene sequence:

>1314_bases
ATGATATTATCTAAATTAACTCGCATTCCTGTAATCCATCGCATTCTGATTGGTCTTTGCAGCGCAGGAATTGTTGTAAC
TATTGCAACAATCCCAGACACTGTCGCTCCCGATTCAGGCTTTTATAAATTAACGGTAGGCCAAACATACCCTATTGAAA
TAAGAAAAGAAGCTTTAATCTCTCATGAAAAAAACTCTTTAAATCAACAGCTTTCTTGGGAGACTCATACAGTCAAGTCA
GGAGAGAGTGCCTCTGTTTTATTTAGTCGTATTGGTTTGGGATACAGCCAACTTCTAAAACTTACCAGTAGTGATAAAGA
GATTGAAAACCAACTCACTCGTTTACGTCCTGGTGACAAATTAAAATTTGGATTTAACCAAGGTCAAGAAATAGTCCAAC
TTATCCGCCCTATCAGCAAATTTGAAACCTATCGTATAAGTAAAGCTGGGGATGGCTATATCGGATTGTTTGAAAAACAA
GATATTGAAACTCAGCTTAACTACACCAAGGCAACCATTACTTCTAACTTTTGGAACGCTTCAATTGGAGCAGGATTAAA
CCCTAACCAAATCATGGAACTTGCTGGTATCTTTGGATGGGATATCGACTTTGCTCTAGATATTCGAGAAGGCGACAATT
TTAAAGTCCTCTACGAAGAGAAATACGTTGAAGGTGAATATGCTGGAAAAGGTAATATTATCGCCGCTTCCTTTACTAAC
CGTGGAGATACTTTTACTGCAATTCGAAACGACAAAAACGGTAATTTTTACGAACCAAATGGCCGAGCAATGAAAAAGGC
TTTTTTACGCTCGCCAATCAATTTCCGTTACGTAAGTTCTAATTTTAACCCTCGTCGTTTACACCCTGTTACTGGGCAAA
GAAAAGCTCATAGAGGAACTGATTATGTTGCTCCTGTCGGCACTCCTATTTGGGCAGCTGGTGATGGCGTTGTTGATAAA
GCGGGTTATAACCAATTTAATGGTAATTATGTATTTATTCGCCATAGTAATACCTACATAACGAAATACTTACACATGAC
TAAACGTTATGTTCGAGCTGGTCAAAGAGTAAAACAAGGGGATACCATTGGTACTCTTGGTGGAACAGGACGAGTAACGG
GACCACATCTTCATTATGAATTCCTAGTAAATGGCGTTCATAAAGACGCTCGAACAGTATCTTTACCACAATCAAAATCA
CTAACAGGTAAAGATAAAAAAGAGTTTGAAGTTGTGGCTAAAGAGCGCTTAAAGCAATTAGAACAATACGGTCAATTCAT
TGTTGGAAACCATCCAGTAATTAACCATGAATAA

Upstream 100 bases:

>100_bases
AAAAGGTGACCAAACTACAAGTTCCTCACATAGTAGTTAACTTCAAAACACGATACACTTCTAGGTTGTTATTTTTATTC
ACTCTTTACTAACTAATCGA

Downstream 100 bases:

>100_bases
CTAAAATTAAAGCCCTAATTAAAGATAATTAGGGCTTTTTTTTAATCAAGTAATTCTCTTACTTTTTTATCTCTTCCAAG
CATTAATAAACAAGGAGTCA

Product: cell wall endopeptidase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MILSKLTRIPVIHRILIGLCSAGIVVTIATIPDTVAPDSGFYKLTVGQTYPIEIRKEALISHEKNSLNQQLSWETHTVKS
GESASVLFSRIGLGYSQLLKLTSSDKEIENQLTRLRPGDKLKFGFNQGQEIVQLIRPISKFETYRISKAGDGYIGLFEKQ
DIETQLNYTKATITSNFWNASIGAGLNPNQIMELAGIFGWDIDFALDIREGDNFKVLYEEKYVEGEYAGKGNIIAASFTN
RGDTFTAIRNDKNGNFYEPNGRAMKKAFLRSPINFRYVSSNFNPRRLHPVTGQRKAHRGTDYVAPVGTPIWAAGDGVVDK
AGYNQFNGNYVFIRHSNTYITKYLHMTKRYVRAGQRVKQGDTIGTLGGTGRVTGPHLHYEFLVNGVHKDARTVSLPQSKS
LTGKDKKEFEVVAKERLKQLEQYGQFIVGNHPVINHE

Sequences:

>Translated_437_residues
MILSKLTRIPVIHRILIGLCSAGIVVTIATIPDTVAPDSGFYKLTVGQTYPIEIRKEALISHEKNSLNQQLSWETHTVKS
GESASVLFSRIGLGYSQLLKLTSSDKEIENQLTRLRPGDKLKFGFNQGQEIVQLIRPISKFETYRISKAGDGYIGLFEKQ
DIETQLNYTKATITSNFWNASIGAGLNPNQIMELAGIFGWDIDFALDIREGDNFKVLYEEKYVEGEYAGKGNIIAASFTN
RGDTFTAIRNDKNGNFYEPNGRAMKKAFLRSPINFRYVSSNFNPRRLHPVTGQRKAHRGTDYVAPVGTPIWAAGDGVVDK
AGYNQFNGNYVFIRHSNTYITKYLHMTKRYVRAGQRVKQGDTIGTLGGTGRVTGPHLHYEFLVNGVHKDARTVSLPQSKS
LTGKDKKEFEVVAKERLKQLEQYGQFIVGNHPVINHE
>Mature_437_residues
MILSKLTRIPVIHRILIGLCSAGIVVTIATIPDTVAPDSGFYKLTVGQTYPIEIRKEALISHEKNSLNQQLSWETHTVKS
GESASVLFSRIGLGYSQLLKLTSSDKEIENQLTRLRPGDKLKFGFNQGQEIVQLIRPISKFETYRISKAGDGYIGLFEKQ
DIETQLNYTKATITSNFWNASIGAGLNPNQIMELAGIFGWDIDFALDIREGDNFKVLYEEKYVEGEYAGKGNIIAASFTN
RGDTFTAIRNDKNGNFYEPNGRAMKKAFLRSPINFRYVSSNFNPRRLHPVTGQRKAHRGTDYVAPVGTPIWAAGDGVVDK
AGYNQFNGNYVFIRHSNTYITKYLHMTKRYVRAGQRVKQGDTIGTLGGTGRVTGPHLHYEFLVNGVHKDARTVSLPQSKS
LTGKDKKEFEVVAKERLKQLEQYGQFIVGNHPVINHE

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=347, Percent_Identity=35.4466858789625, Blast_Score=216, Evalue=3e-57,
Organism=Escherichia coli, GI87082174, Length=97, Percent_Identity=40.2061855670103, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 48986; Mature: 48986

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MILSKLTRIPVIHRILIGLCSAGIVVTIATIPDTVAPDSGFYKLTVGQTYPIEIRKEALI
CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHH
SHEKNSLNQQLSWETHTVKSGESASVLFSRIGLGYSQLLKLTSSDKEIENQLTRLRPGDK
HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCE
LKFGFNQGQEIVQLIRPISKFETYRISKAGDGYIGLFEKQDIETQLNYTKATITSNFWNA
EEECCCCCHHHHHHHHHHHHHHEEEEECCCCCEEEEEECCCCHHHHCEEEEEEECCCCCC
SIGAGLNPNQIMELAGIFGWDIDFALDIREGDNFKVLYEEKYVEGEYAGKGNIIAASFTN
CCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEEECCCEECCCCCEEEEEECC
RGDTFTAIRNDKNGNFYEPNGRAMKKAFLRSPINFRYVSSNFNPRRLHPVTGQRKAHRGT
CCCEEEEEEECCCCCEECCCCHHHHHHHHCCCCCEEEEECCCCCCEECCCCCCCCCCCCC
DYVAPVGTPIWAAGDGVVDKAGYNQFNGNYVFIRHSNTYITKYLHMTKRYVRAGQRVKQG
CCCCCCCCCEEECCCCCEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
DTIGTLGGTGRVTGPHLHYEFLVNGVHKDARTVSLPQSKSLTGKDKKEFEVVAKERLKQL
CCEEECCCCCCCCCCCEEHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
EQYGQFIVGNHPVINHE
HHHCCEEECCCCCCCCC
>Mature Secondary Structure
MILSKLTRIPVIHRILIGLCSAGIVVTIATIPDTVAPDSGFYKLTVGQTYPIEIRKEALI
CCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCEEEEEECCCCCHHHHHHHHH
SHEKNSLNQQLSWETHTVKSGESASVLFSRIGLGYSQLLKLTSSDKEIENQLTRLRPGDK
HHHHHHHHHHCCCCEEEECCCCHHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHCCCCCE
LKFGFNQGQEIVQLIRPISKFETYRISKAGDGYIGLFEKQDIETQLNYTKATITSNFWNA
EEECCCCCHHHHHHHHHHHHHHEEEEECCCCCEEEEEECCCCHHHHCEEEEEEECCCCCC
SIGAGLNPNQIMELAGIFGWDIDFALDIREGDNFKVLYEEKYVEGEYAGKGNIIAASFTN
CCCCCCCHHHHHHHHHHCCCCEEEEEEEECCCCEEEEEEEEECCCEECCCCCEEEEEECC
RGDTFTAIRNDKNGNFYEPNGRAMKKAFLRSPINFRYVSSNFNPRRLHPVTGQRKAHRGT
CCCEEEEEEECCCCCEECCCCHHHHHHHHCCCCCEEEEECCCCCCEECCCCCCCCCCCCC
DYVAPVGTPIWAAGDGVVDKAGYNQFNGNYVFIRHSNTYITKYLHMTKRYVRAGQRVKQG
CCCCCCCCCEEECCCCCEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCCCCC
DTIGTLGGTGRVTGPHLHYEFLVNGVHKDARTVSLPQSKSLTGKDKKEFEVVAKERLKQL
CCEEECCCCCCCCCCCEEHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
EQYGQFIVGNHPVINHE
HHHCCEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]