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The map label for this gene is rraA2 [C]

Identifier: 59712726

GI number: 59712726

Start: 2355511

End: 2355987

Strand: Reverse

Name: rraA2 [C]

Synonym: VF_2119

Alternate gene names: 59712726

Gene position: 2355987-2355511 (Counterclockwise)

Preceding gene: 59712728

Following gene: 172087754

Centisome position: 81.31

GC content: 38.16

Gene sequence:

>477_bases
ATGGATTTATTACCTGATATTTGTGATCAGTTTGAAGATAAAGTGCAGTTAGTTGATATCGATTTTAAAAACTTTGGCGG
GAAGGCGTGTTTTTATGGCGAGATTGTAACGGTTCGTTGTTATAAAGATAATTCTTTGGTTAGAGAAGTGCTCCAGCAGA
ATGGAAAGGGCAAAGTATTATTCATAGATGGAAATGGATCGCGCCAAAAAGCGTTACTTGGTGATCAAGTTGCTACCTTG
GCTGTTGAAAATCAGTGGGAGGGAGTGATTGTTTATGGTGTTGTTCGTGATGTCGGTGCAATACAAACCATGCCATTAGG
CCTAAAGGCACTAGGAACCTCACCTTTCAAAACAGAGAAGAGAGGCGCAGGAGAGCAACAAGTTTCTCTCACTATTAATG
GAAAAATGATTTCTCCAGGAGATTATATTTATGCAGATCTCAATGGGTTATTAATGAGTAAAGAGTTATTAATTTAA

Upstream 100 bases:

>100_bases
TATCTATATTGAAATTGTAAATATCTATGCGAATACTAACTAAGTAATTTGAAAAATGTTGTTATTGTATAGTTGATTTT
ACAAACAAGGAGAACATAAA

Downstream 100 bases:

>100_bases
ATAAATTTTATAAATAAATAAAATATTTGTTTTTATTATTCAAGGTCTTGGTGATTAGTTTGTATATTTTATTGAGTAAA
TAAATAAACTTTTCATTGAC

Product: ribonuclease activity regulator protein RraA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MDLLPDICDQFEDKVQLVDIDFKNFGGKACFYGEIVTVRCYKDNSLVREVLQQNGKGKVLFIDGNGSRQKALLGDQVATL
AVENQWEGVIVYGVVRDVGAIQTMPLGLKALGTSPFKTEKRGAGEQQVSLTINGKMISPGDYIYADLNGLLMSKELLI

Sequences:

>Translated_158_residues
MDLLPDICDQFEDKVQLVDIDFKNFGGKACFYGEIVTVRCYKDNSLVREVLQQNGKGKVLFIDGNGSRQKALLGDQVATL
AVENQWEGVIVYGVVRDVGAIQTMPLGLKALGTSPFKTEKRGAGEQQVSLTINGKMISPGDYIYADLNGLLMSKELLI
>Mature_158_residues
MDLLPDICDQFEDKVQLVDIDFKNFGGKACFYGEIVTVRCYKDNSLVREVLQQNGKGKVLFIDGNGSRQKALLGDQVATL
AVENQWEGVIVYGVVRDVGAIQTMPLGLKALGTSPFKTEKRGAGEQQVSLTINGKMISPGDYIYADLNGLLMSKELLI

Specific function: Regulator Of Rnase E/Rne, Which Inhibits The Endonuclease Activity And Thereby Leads To Increase The Half-Life And Abundance Of Rnas. General Modulator Of RNA Abundance. Does Not Have Any Methyltransferase Activity. [C]

COG id: COG0684

COG function: function code H; Demethylmenaquinone methyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RraA family [H]

Homologues:

Organism=Escherichia coli, GI1790364, Length=153, Percent_Identity=39.8692810457516, Blast_Score=140, Evalue=4e-35,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005493
- InterPro:   IPR010203 [H]

Pfam domain/function: PF03737 Methyltransf_6 [H]

EC number: NA

Molecular weight: Translated: 17319; Mature: 17319

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLLPDICDQFEDKVQLVDIDFKNFGGKACFYGEIVTVRCYKDNSLVREVLQQNGKGKVL
CCCCHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCHHHHHHHHCCCCEEEE
FIDGNGSRQKALLGDQVATLAVENQWEGVIVYGVVRDVGAIQTMPLGLKALGTSPFKTEK
EEECCCCCCEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEECCCCCCCCCC
RGAGEQQVSLTINGKMISPGDYIYADLNGLLMSKELLI
CCCCCEEEEEEECCEEECCCCEEEEECCCEEEEEEECC
>Mature Secondary Structure
MDLLPDICDQFEDKVQLVDIDFKNFGGKACFYGEIVTVRCYKDNSLVREVLQQNGKGKVL
CCCCHHHHHHHCCCEEEEEEECCCCCCCEEEEEEEEEEEEECCCHHHHHHHHCCCCEEEE
FIDGNGSRQKALLGDQVATLAVENQWEGVIVYGVVRDVGAIQTMPLGLKALGTSPFKTEK
EEECCCCCCEEECCCCEEEEEECCCCCCEEEEEEECCCCCEEECCCCCEECCCCCCCCCC
RGAGEQQVSLTINGKMISPGDYIYADLNGLLMSKELLI
CCCCCEEEEEEECCEEECCCCEEEEECCCEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA