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The map label for this gene is rseC [C]

Identifier: 59712697

GI number: 59712697

Start: 2327965

End: 2328450

Strand: Reverse

Name: rseC [C]

Synonym: VF_2090

Alternate gene names: 59712697

Gene position: 2328450-2327965 (Counterclockwise)

Preceding gene: 172087752

Following gene: 59712696

Centisome position: 80.36

GC content: 38.68

Gene sequence:

>486_bases
ATGATGACTGCATTAGCTACCGTTCTTGAAGTACAAGAAGATATTGTAGTGGTGGGATGCCAACAAAAAACAAGTTGTAA
CCACTGCTCATCAAAAGACTCTTGTGGAACAGGGATTGTTTCTAAAGCGCTACCTGGAAAAGTCCATCATTGGGCATTTC
ATACTGAGAAAAAGTTATCAGTAGGTCAATTGGTTGAAATTGGCCTACCAGAGAAGAATTTATTGCAGTCCGCTGCTATT
GTTTATTTAACACCACTTCTGTTTTTATTGTTTGGTGCGTTATTGTCCGAGTGGTTTTTAAGTCCAATGATTGGGCTTGG
AGAGTTAACAACAATTGTTGTATCGGTTTTATTTGCTCTTGGTGGTTACCAATTAGCAAAAAGACTTTCTCATCATATTG
AACAAAAAACAGAACAACAAGTTAGCTTGCTTAGAGTGCTAGGAGAACCCGTTTCCGACACAAACTTGGGAAATGCTGCA
CGATAA

Upstream 100 bases:

>100_bases
TCAGTGTTGTTGGTGATATTCCAGCATTAACGGCTAAACGAATTGCTGAATCAGTGGTGTTTAGTGAATCAAAACCTATT
ATTGAGGATAAGTAAGCGAA

Downstream 100 bases:

>100_bases
GATAGCGACTTGCTCAGAAATTGGGTAGAATCCCACAACTTGATCTCACGATCCAATCCTATTAACTAATTGAGTTTGTC
ACATCATTCATGAAGCACAT

Product: sigma-E factor regulatory protein RseC

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 161

Protein sequence:

>161_residues
MMTALATVLEVQEDIVVVGCQQKTSCNHCSSKDSCGTGIVSKALPGKVHHWAFHTEKKLSVGQLVEIGLPEKNLLQSAAI
VYLTPLLFLLFGALLSEWFLSPMIGLGELTTIVVSVLFALGGYQLAKRLSHHIEQKTEQQVSLLRVLGEPVSDTNLGNAA
R

Sequences:

>Translated_161_residues
MMTALATVLEVQEDIVVVGCQQKTSCNHCSSKDSCGTGIVSKALPGKVHHWAFHTEKKLSVGQLVEIGLPEKNLLQSAAI
VYLTPLLFLLFGALLSEWFLSPMIGLGELTTIVVSVLFALGGYQLAKRLSHHIEQKTEQQVSLLRVLGEPVSDTNLGNAA
R
>Mature_161_residues
MMTALATVLEVQEDIVVVGCQQKTSCNHCSSKDSCGTGIVSKALPGKVHHWAFHTEKKLSVGQLVEIGLPEKNLLQSAAI
VYLTPLLFLLFGALLSEWFLSPMIGLGELTTIVVSVLFALGGYQLAKRLSHHIEQKTEQQVSLLRVLGEPVSDTNLGNAA
R

Specific function: Seems To Modulate The Activity Of Rpoe (Sigma-E). [C]

COG id: COG3086

COG function: function code T; Positive regulator of sigma E activity

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rseC family [H]

Homologues:

Organism=Escherichia coli, GI1788923, Length=150, Percent_Identity=30, Blast_Score=75, Evalue=2e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007359 [H]

Pfam domain/function: PF04246 RseC_MucC [H]

EC number: NA

Molecular weight: Translated: 17423; Mature: 17423

Theoretical pI: Translated: 7.11; Mature: 7.11

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTALATVLEVQEDIVVVGCQQKTSCNHCSSKDSCGTGIVSKALPGKVHHWAFHTEKKLS
CHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHCCCCCCC
VGQLVEIGLPEKNLLQSAAIVYLTPLLFLLFGALLSEWFLSPMIGLGELTTIVVSVLFAL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
GGYQLAKRLSHHIEQKTEQQVSLLRVLGEPVSDTNLGNAAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MMTALATVLEVQEDIVVVGCQQKTSCNHCSSKDSCGTGIVSKALPGKVHHWAFHTEKKLS
CHHHHHHHHHHHHCEEEECCCCCCCCCCCCCCCCCCCHHHHHCCCCCHHHHHHCCCCCCC
VGQLVEIGLPEKNLLQSAAIVYLTPLLFLLFGALLSEWFLSPMIGLGELTTIVVSVLFAL
HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
GGYQLAKRLSHHIEQKTEQQVSLLRVLGEPVSDTNLGNAAR
CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]