Click here to switch to the map view.

The map label for this gene is secF [H]

Identifier: 59712573

GI number: 59712573

Start: 2197178

End: 2198128

Strand: Reverse

Name: secF [H]

Synonym: VF_1966

Alternate gene names: 59712573

Gene position: 2198128-2197178 (Counterclockwise)

Preceding gene: 59712574

Following gene: 59712569

Centisome position: 75.86

GC content: 40.17

Gene sequence:

>951_bases
ATGTTTCAATTAATGAAAGCAGAGAAAACGATCGACTTCATGCGTTGGTCTAAAGCTGCCTTCCTTTTCTCAATGTTGAT
GATTATTGCTTCTATAGCTACATTATCAACAAAGTGGTTAAACTGGGGCTTAGACTTCACGGGTGGCACACTGATTGAAG
TTGGTTTTGAACAGCCTGCACAATTACCAGATATCCGTAGTGCATTAGAAGCGAAAGGTTTTGGTGATGCTACGGTTCAA
AACTTTGGTACAGCACGTGATGTTATTGTTCGTCTACAACCTCGTGAAAACGTAAAAGGTGAAGAGTTAGGCAACCAAAT
CATCAGTGCAATTAAAGAAGGTACTGGTGAGCAAGTAGAGATGCGTCGTATTGAGTTCGTTGGTCCAAATGTGGGTGACG
AACTTACTGAAGCGGGTGGTTTAGCTATCTTAGTTTCTTTGTTATGTATCTTGGCTTATGTTTCGATGCGTTTCCAATGG
CGTTTAGCTGCTGGTGCGGTACTCGCTTTGGCGCACGATATCATTATTACGTTAGGTATTTTCTCTTTCTTACAAATTGA
AGTCGATTTAACGATTATTGCAGCACTACTAACGGTGGTGGGTTATTCTTTGAATGATACCATTGTTGTATTTGACCGTA
TTCGTGAAAACTTCTTGAAAATGCGTAAGGGTGATTCTAACGACATTATTAATGATGCGATTACGCAAACATTAAGTCGT
ACATTAATTACATCTGCAACGACGCTATTTGTAGTTATCGCATTGTTCACTCAAGGCGGTGCGATGATCCATGGCTTTGC
TCTTGCATTGCTGTTAGGTATCACTATCGGTACGTATTCTTCTATCTATGTAGCATCAGCATTGGCTCTGAAATTAGGTA
TTACTCGTGAGCACTTAATGCCAACACCTATTGATAAAGAAGGCGAAGAAGAGTTTGAACAGATGCCTTAA

Upstream 100 bases:

>100_bases
AACATCAATGTTTACTGCGATTGTTGGTACTCGTTGTGTGATTAACTTAGTTTACGGCGGTAAGCGCGTAGACAAGCTGT
CGATCTAAGGACTCATTATT

Downstream 100 bases:

>100_bases
CGGTATTTTGTTAACTATATAATAAAAAATGGACCATTATGGTCCATTTTTTATGTCTACTAAAAGCTTTAAAGTTTCTC
TAAATCTTTTTCTATTTCTT

Product: preprotein translocase subunit SecF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 316; Mature: 316

Protein sequence:

>316_residues
MFQLMKAEKTIDFMRWSKAAFLFSMLMIIASIATLSTKWLNWGLDFTGGTLIEVGFEQPAQLPDIRSALEAKGFGDATVQ
NFGTARDVIVRLQPRENVKGEELGNQIISAIKEGTGEQVEMRRIEFVGPNVGDELTEAGGLAILVSLLCILAYVSMRFQW
RLAAGAVLALAHDIIITLGIFSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGDSNDIINDAITQTLSR
TLITSATTLFVVIALFTQGGAMIHGFALALLLGITIGTYSSIYVASALALKLGITREHLMPTPIDKEGEEEFEQMP

Sequences:

>Translated_316_residues
MFQLMKAEKTIDFMRWSKAAFLFSMLMIIASIATLSTKWLNWGLDFTGGTLIEVGFEQPAQLPDIRSALEAKGFGDATVQ
NFGTARDVIVRLQPRENVKGEELGNQIISAIKEGTGEQVEMRRIEFVGPNVGDELTEAGGLAILVSLLCILAYVSMRFQW
RLAAGAVLALAHDIIITLGIFSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGDSNDIINDAITQTLSR
TLITSATTLFVVIALFTQGGAMIHGFALALLLGITIGTYSSIYVASALALKLGITREHLMPTPIDKEGEEEFEQMP
>Mature_316_residues
MFQLMKAEKTIDFMRWSKAAFLFSMLMIIASIATLSTKWLNWGLDFTGGTLIEVGFEQPAQLPDIRSALEAKGFGDATVQ
NFGTARDVIVRLQPRENVKGEELGNQIISAIKEGTGEQVEMRRIEFVGPNVGDELTEAGGLAILVSLLCILAYVSMRFQW
RLAAGAVLALAHDIIITLGIFSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGDSNDIINDAITQTLSR
TLITSATTLFVVIALFTQGGAMIHGFALALLLGITIGTYSSIYVASALALKLGITREHLMPTPIDKEGEEEFEQMP

Specific function: Involved in protein export [H]

COG id: COG0341

COG function: function code U; Preprotein translocase subunit SecF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the secD/secF family. SecF subfamily [H]

Homologues:

Organism=Escherichia coli, GI1786610, Length=315, Percent_Identity=52.6984126984127, Blast_Score=350, Evalue=7e-98,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022813
- InterPro:   IPR022646
- InterPro:   IPR022645
- InterPro:   IPR005665 [H]

Pfam domain/function: PF07549 Sec_GG; PF02355 SecD_SecF [H]

EC number: NA

Molecular weight: Translated: 34653; Mature: 34653

Theoretical pI: Translated: 4.63; Mature: 4.63

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQLMKAEKTIDFMRWSKAAFLFSMLMIIASIATLSTKWLNWGLDFTGGTLIEVGFEQPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
QLPDIRSALEAKGFGDATVQNFGTARDVIVRLQPRENVKGEELGNQIISAIKEGTGEQVE
CCHHHHHHHHHCCCCCHHHHHCCCHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHH
MRRIEFVGPNVGDELTEAGGLAILVSLLCILAYVSMRFQWRLAAGAVLALAHDIIITLGI
HHHHEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGDSNDIINDAITQTLSR
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
TLITSATTLFVVIALFTQGGAMIHGFALALLLGITIGTYSSIYVASALALKLGITREHLM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
PTPIDKEGEEEFEQMP
CCCCCCCCHHHHHCCC
>Mature Secondary Structure
MFQLMKAEKTIDFMRWSKAAFLFSMLMIIASIATLSTKWLNWGLDFTGGTLIEVGFEQPA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCC
QLPDIRSALEAKGFGDATVQNFGTARDVIVRLQPRENVKGEELGNQIISAIKEGTGEQVE
CCHHHHHHHHHCCCCCHHHHHCCCHHHHEEEECCCCCCCHHHHHHHHHHHHHHCCCCHHH
MRRIEFVGPNVGDELTEAGGLAILVSLLCILAYVSMRFQWRLAAGAVLALAHDIIITLGI
HHHHEEECCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FSFLQIEVDLTIIAALLTVVGYSLNDTIVVFDRIRENFLKMRKGDSNDIINDAITQTLSR
HHHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
TLITSATTLFVVIALFTQGGAMIHGFALALLLGITIGTYSSIYVASALALKLGITREHLM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCC
PTPIDKEGEEEFEQMP
CCCCCCCCHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]