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The map label for this gene is napC [H]

Identifier: 59712510

GI number: 59712510

Start: 2135531

End: 2136106

Strand: Reverse

Name: napC [H]

Synonym: VF_1903

Alternate gene names: 59712510

Gene position: 2136106-2135531 (Counterclockwise)

Preceding gene: 59712511

Following gene: 59712509

Centisome position: 73.72

GC content: 40.97

Gene sequence:

>576_bases
ATGAAATTATTAAAAGCATTTTGGAAGCGTTTTTCGTCTCCTAGTAAAGCTGCAGTAGGCATTGTTCTATTTATGGGCTT
TATGGGCGGCTTGCTTTTCTGGGGCGCATTTAACACTGGTATGGAAGCAACCAATACAGAAGAGTTTTGTTCTGGTTGTC
ACGCACCAATTGTTAAAGAAATCCAAGAGACGATTCACTATTCAAACCGTTCAGGTGTACGTGCTATCTGTTCTGATTGT
CACGTTCCACATAACTGGACAGATAAGATTGTACGTAAGGTACAGGCATCGAAAGAGCTCTTTGCTCACTATGTGACAAA
AACGATTGATACTGAAGAGAAGTTTAAAGAGCGTCGAGCGCATTTAGCTGAGCGTGAATGGCATCGAATGAAAGAAAACA
ACTCTCAAGAATGTCGTAATTGTCATGAGTTTGATTATATGGATTTCTCAGAGCAAGGCCCACGTAGTGCGAAACAACAC
TCAACGGCGTTAGCATCAGGTGAAAAAACGTGTGTAGATTGTCATAAAGGTATCGCACATAAATTGCCTGATATGTCTGG
CATTGAAGGTTGGTAA

Upstream 100 bases:

>100_bases
ACGTTCCTCAAGCGGATGCAAAACCACTAGTAGAGAACGAATTTGAACGTGTGGACTCATTGCGCTAGTCGATAGCCAAT
AAAGTTAAGAGAGGCTATAC

Downstream 100 bases:

>100_bases
GGAGATAGCATGAGTACATTAGAATCAGTGATTTGGCATACTCTAGGTTACGCTGCGATGCCAGCTATTATTCTAGGCGG
TTTTGCTGCGGTATCTGTGT

Product: nitrate reductase, cytochrome c-type, periplasmic

Products: reduced acceptor; NO3- [C]

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 191

Protein sequence:

>191_residues
MKLLKAFWKRFSSPSKAAVGIVLFMGFMGGLLFWGAFNTGMEATNTEEFCSGCHAPIVKEIQETIHYSNRSGVRAICSDC
HVPHNWTDKIVRKVQASKELFAHYVTKTIDTEEKFKERRAHLAEREWHRMKENNSQECRNCHEFDYMDFSEQGPRSAKQH
STALASGEKTCVDCHKGIAHKLPDMSGIEGW

Sequences:

>Translated_191_residues
MKLLKAFWKRFSSPSKAAVGIVLFMGFMGGLLFWGAFNTGMEATNTEEFCSGCHAPIVKEIQETIHYSNRSGVRAICSDC
HVPHNWTDKIVRKVQASKELFAHYVTKTIDTEEKFKERRAHLAEREWHRMKENNSQECRNCHEFDYMDFSEQGPRSAKQH
STALASGEKTCVDCHKGIAHKLPDMSGIEGW
>Mature_191_residues
MKLLKAFWKRFSSPSKAAVGIVLFMGFMGGLLFWGAFNTGMEATNTEEFCSGCHAPIVKEIQETIHYSNRSGVRAICSDC
HVPHNWTDKIVRKVQASKELFAHYVTKTIDTEEKFKERRAHLAEREWHRMKENNSQECRNCHEFDYMDFSEQGPRSAKQH
STALASGEKTCVDCHKGIAHKLPDMSGIEGW

Specific function: Mediates electron flow from quinones to the NapAB complex [H]

COG id: COG3005

COG function: function code C; Nitrate/TMAO reductases, membrane-bound tetraheme cytochrome c subunit

Gene ontology:

Cell location: Cell inner membrane; Single-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1788530, Length=190, Percent_Identity=54.2105263157895, Blast_Score=227, Evalue=4e-61,
Organism=Escherichia coli, GI1787230, Length=186, Percent_Identity=43.010752688172, Blast_Score=175, Evalue=2e-45,
Organism=Escherichia coli, GI1788181, Length=147, Percent_Identity=40.1360544217687, Blast_Score=129, Evalue=2e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011031
- InterPro:   IPR005126
- InterPro:   IPR011885 [H]

Pfam domain/function: PF03264 Cytochrom_NNT [H]

EC number: NA

Molecular weight: Translated: 21815; Mature: 21815

Theoretical pI: Translated: 8.04; Mature: 8.04

Prosite motif: PS51008 MULTIHEME_CYTC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

4.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
7.9 %Cys+Met (Translated Protein)
4.2 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
7.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLLKAFWKRFSSPSKAAVGIVLFMGFMGGLLFWGAFNTGMEATNTEEFCSGCHAPIVKE
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHH
IQETIHYSNRSGVRAICSDCHVPHNWTDKIVRKVQASKELFAHYVTKTIDTEEKFKERRA
HHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
HLAEREWHRMKENNSQECRNCHEFDYMDFSEQGPRSAKQHSTALASGEKTCVDCHKGIAH
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
KLPDMSGIEGW
HCCCCCCCCCC
>Mature Secondary Structure
MKLLKAFWKRFSSPSKAAVGIVLFMGFMGGLLFWGAFNTGMEATNTEEFCSGCHAPIVKE
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCHHHHH
IQETIHYSNRSGVRAICSDCHVPHNWTDKIVRKVQASKELFAHYVTKTIDTEEKFKERRA
HHHHHHCCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
HLAEREWHRMKENNSQECRNCHEFDYMDFSEQGPRSAKQHSTALASGEKTCVDCHKGIAH
HHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHH
KLPDMSGIEGW
HCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Acceptor; nitrite [C]

Specific reaction: Acceptor + nitrite = reduced acceptor + NO3- [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]