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The map label for this gene is ydiU [C]

Identifier: 59712376

GI number: 59712376

Start: 1994750

End: 1996207

Strand: Reverse

Name: ydiU [C]

Synonym: VF_1769

Alternate gene names: 59712376

Gene position: 1996207-1994750 (Counterclockwise)

Preceding gene: 59712382

Following gene: 59712373

Centisome position: 68.89

GC content: 37.86

Gene sequence:

>1458_bases
ATGTCTTTTTGGAATTCACTTTCAATTACTACTCGCTATTCAAGATTGCCTCGCTGTTTTTTCACGTATGTACAACCGAC
CCCCTTAGATAATTCTCGTTGGCTTATATGGAATAGTGAATTAGCTAAACAGTTTGATTTACCTGAGAACGTACATAATC
ATTCTGAGCTGTTAGATGCGTTTTCGGGTGAGACAGTGCCGTCCGTTTTTTCTCCACTAGCCATGAAATATGCAGGGCAT
CAATTTGGTTGTTATAACCCAGACCTTGGTGATGGAAGAGGACTTTTATTAGCAGAAATAAAAGATAAAAAAGGGAATAG
TTTTGATCTTCATTTAAAAGGAGCTGGTTTAACGCCTTATTCTCGTTCTGGTGATGGCCGAGCTGTATTACGCTCTACAA
TTCGTGAGTATTTATGTAGTGAAGCGATGGCTGGGCTTGGTATTCCTACGACACGAGCATTAGGAATGATGACGAGTGAT
ACCCCGGTATTTAGAGAAGGGTATGAGACTGGGGCTCTACTCATTAGAATGGCTGAAACTCATATTCGATTTGGTCATTT
TGAGCATTTGTTTTATTCAAATTTATTGGAAGAGCTAAAGTTATTATCGGATAAAGTGATTGAATGGCATTTCCCTTGTT
GTTTAGGTGAAGATAAACCATATCTCGCAATGTTTAATAATATTGTAGATAGAACTGCTTATATGATTGCGCAATGGCAG
GCTGTGGGATTTGCCCATGGTGTTATGAATACCGATAATATGTCGATTATTGGCCAAACGTTCGATTATGGTCCTTTTGG
CTTTCTTGATGATTATGAGCCCGGTTATATCTGTAACCATTCTGACTACCAAGGACGTTATGCCTTTAATCAACAACCTA
GAATTGGCTTATGGAACTTATCGGCCTTGGCACATTCGCTTTCCCCATTAATTGATAAGTCAGATTTAGAAAAAGCATTA
GAGCAATATGAAATAAAATTGCATGATTATTTTAGTCAATTGATGCGAAAAAAATTGGGGCTGCTTTCTAAACAAGAAGG
GGATACCCGTCTATTTGAATCTATGTTCGAATTACTGTCACAAAATGCAGTGGATTACACTCGATTTATGAGGGCGTTGT
CTTACCTAGACTCCCAAGATAAACAAACGGTAGTTGATTTATTTGTTGATAGAGAAGCGGCAACATTATGGATAGACTTG
TATCTAACACGATGTAAGTTAGAAGTTGATAGCTTCGATATGCGTTGCTCAAAAATGAGAAAAGTGAACCCGAAATATGT
TTTAAGAAACTATTTAGCTCAACAAGCAATTGTTAAAGCAAATGAGGGGGATTTTAGTGATGTTAAAATTTTATCTACGC
TATTGGCATCGCCATTTGATGAACATCCTGACTTTGAGCGTTATGCTGAATTACCACCAGAGTGGGGAAAGAGAATGGAA
ATCAGTTGTTCATCATAG

Upstream 100 bases:

>100_bases
GCCGCATTAACCTTATGGTTAGTGCGGCTTTTTTCATTTCTGTCATATTATTTATCAATATGCTAGCGTTAGTTCATTGC
ATAGTTAATGGATTACTCTT

Downstream 100 bases:

>100_bases
AGCAAAGTAATTTGTGACGCAGTAAAGCAGCAATGTTTGCTGCTTTTTACGCTTAGTTTTTCTCTTCTAAGCTGTGAAAC
ATGAGCTGAAGCAATTCGTC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 485; Mature: 484

Protein sequence:

>485_residues
MSFWNSLSITTRYSRLPRCFFTYVQPTPLDNSRWLIWNSELAKQFDLPENVHNHSELLDAFSGETVPSVFSPLAMKYAGH
QFGCYNPDLGDGRGLLLAEIKDKKGNSFDLHLKGAGLTPYSRSGDGRAVLRSTIREYLCSEAMAGLGIPTTRALGMMTSD
TPVFREGYETGALLIRMAETHIRFGHFEHLFYSNLLEELKLLSDKVIEWHFPCCLGEDKPYLAMFNNIVDRTAYMIAQWQ
AVGFAHGVMNTDNMSIIGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFNQQPRIGLWNLSALAHSLSPLIDKSDLEKAL
EQYEIKLHDYFSQLMRKKLGLLSKQEGDTRLFESMFELLSQNAVDYTRFMRALSYLDSQDKQTVVDLFVDREAATLWIDL
YLTRCKLEVDSFDMRCSKMRKVNPKYVLRNYLAQQAIVKANEGDFSDVKILSTLLASPFDEHPDFERYAELPPEWGKRME
ISCSS

Sequences:

>Translated_485_residues
MSFWNSLSITTRYSRLPRCFFTYVQPTPLDNSRWLIWNSELAKQFDLPENVHNHSELLDAFSGETVPSVFSPLAMKYAGH
QFGCYNPDLGDGRGLLLAEIKDKKGNSFDLHLKGAGLTPYSRSGDGRAVLRSTIREYLCSEAMAGLGIPTTRALGMMTSD
TPVFREGYETGALLIRMAETHIRFGHFEHLFYSNLLEELKLLSDKVIEWHFPCCLGEDKPYLAMFNNIVDRTAYMIAQWQ
AVGFAHGVMNTDNMSIIGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFNQQPRIGLWNLSALAHSLSPLIDKSDLEKAL
EQYEIKLHDYFSQLMRKKLGLLSKQEGDTRLFESMFELLSQNAVDYTRFMRALSYLDSQDKQTVVDLFVDREAATLWIDL
YLTRCKLEVDSFDMRCSKMRKVNPKYVLRNYLAQQAIVKANEGDFSDVKILSTLLASPFDEHPDFERYAELPPEWGKRME
ISCSS
>Mature_484_residues
SFWNSLSITTRYSRLPRCFFTYVQPTPLDNSRWLIWNSELAKQFDLPENVHNHSELLDAFSGETVPSVFSPLAMKYAGHQ
FGCYNPDLGDGRGLLLAEIKDKKGNSFDLHLKGAGLTPYSRSGDGRAVLRSTIREYLCSEAMAGLGIPTTRALGMMTSDT
PVFREGYETGALLIRMAETHIRFGHFEHLFYSNLLEELKLLSDKVIEWHFPCCLGEDKPYLAMFNNIVDRTAYMIAQWQA
VGFAHGVMNTDNMSIIGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFNQQPRIGLWNLSALAHSLSPLIDKSDLEKALE
QYEIKLHDYFSQLMRKKLGLLSKQEGDTRLFESMFELLSQNAVDYTRFMRALSYLDSQDKQTVVDLFVDREAATLWIDLY
LTRCKLEVDSFDMRCSKMRKVNPKYVLRNYLAQQAIVKANEGDFSDVKILSTLLASPFDEHPDFERYAELPPEWGKRMEI
SCSS

Specific function: Unknown

COG id: COG0397

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0061 (SELO) family

Homologues:

Organism=Homo sapiens, GI32880229, Length=380, Percent_Identity=40.7894736842105, Blast_Score=256, Evalue=4e-68,
Organism=Escherichia coli, GI1787999, Length=483, Percent_Identity=49.0683229813665, Blast_Score=459, Evalue=1e-130,
Organism=Saccharomyces cerevisiae, GI6325034, Length=445, Percent_Identity=31.9101123595506, Blast_Score=192, Evalue=7e-50,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): Y1769_VIBF1 (Q5E3Y2)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_205152.1
- STRING:   Q5E3Y2
- GeneID:   3277680
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_1769
- NMPDR:   fig|312309.3.peg.1769
- eggNOG:   COG0397
- HOGENOM:   HBG683993
- OMA:   THIRFGH
- PhylomeDB:   Q5E3Y2
- ProtClustDB:   PRK00029
- BioCyc:   VFIS312309:VF1769-MONOMER
- HAMAP:   MF_00692
- InterPro:   IPR003846

Pfam domain/function: PF02696 UPF0061

EC number: NA

Molecular weight: Translated: 55615; Mature: 55484

Theoretical pI: Translated: 5.62; Mature: 5.62

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFWNSLSITTRYSRLPRCFFTYVQPTPLDNSRWLIWNSELAKQFDLPENVHNHSELLDA
CCCCCCCEEEHHHHHCCHHHHEECCCCCCCCCEEEEECHHHHHHCCCCHHHHHHHHHHHH
FSGETVPSVFSPLAMKYAGHQFGCYNPDLGDGRGLLLAEIKDKKGNSFDLHLKGAGLTPY
HCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCC
SRSGDGRAVLRSTIREYLCSEAMAGLGIPTTRALGMMTSDTPVFREGYETGALLIRMAET
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHCCCCCCHHHEEEHHH
HIRFGHFEHLFYSNLLEELKLLSDKVIEWHFPCCLGEDKPYLAMFNNIVDRTAYMIAQWQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEECCCCCCHHHHHHHHHHHHHHHHHHHH
AVGFAHGVMNTDNMSIIGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFNQQPRIGLWNL
HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCEEEH
SALAHSLSPLIDKSDLEKALEQYEIKLHDYFSQLMRKKLGLLSKQEGDTRLFESMFELLS
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QNAVDYTRFMRALSYLDSQDKQTVVDLFVDREAATLWIDLYLTRCKLEVDSFDMRCSKMR
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHEEEEEEEEEHHEEEECHHHHHHHHHH
KVNPKYVLRNYLAQQAIVKANEGDFSDVKILSTLLASPFDEHPDFERYAELPPEWGKRME
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEE
ISCSS
EEECC
>Mature Secondary Structure 
SFWNSLSITTRYSRLPRCFFTYVQPTPLDNSRWLIWNSELAKQFDLPENVHNHSELLDA
CCCCCCEEEHHHHHCCHHHHEECCCCCCCCCEEEEECHHHHHHCCCCHHHHHHHHHHHH
FSGETVPSVFSPLAMKYAGHQFGCYNPDLGDGRGLLLAEIKDKKGNSFDLHLKGAGLTPY
HCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECCCCCCC
SRSGDGRAVLRSTIREYLCSEAMAGLGIPTTRALGMMTSDTPVFREGYETGALLIRMAET
CCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCHHHCCCCCCHHHEEEHHH
HIRFGHFEHLFYSNLLEELKLLSDKVIEWHFPCCLGEDKPYLAMFNNIVDRTAYMIAQWQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHEECCEECCCCCCHHHHHHHHHHHHHHHHHHHH
AVGFAHGVMNTDNMSIIGQTFDYGPFGFLDDYEPGYICNHSDYQGRYAFNQQPRIGLWNL
HHHHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCEEECCCCCCCCEEECCCCCCCEEEH
SALAHSLSPLIDKSDLEKALEQYEIKLHDYFSQLMRKKLGLLSKQEGDTRLFESMFELLS
HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
QNAVDYTRFMRALSYLDSQDKQTVVDLFVDREAATLWIDLYLTRCKLEVDSFDMRCSKMR
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHEEEEEEEEEHHEEEECHHHHHHHHHH
KVNPKYVLRNYLAQQAIVKANEGDFSDVKILSTLLASPFDEHPDFERYAELPPEWGKRME
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCCHHHHHCCCCCCCCEEE
ISCSS
EEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA