Click here to switch to the map view.

The map label for this gene is ygiQ [C]

Identifier: 59712333

GI number: 59712333

Start: 1947242

End: 1949611

Strand: Direct

Name: ygiQ [C]

Synonym: VF_1726

Alternate gene names: 59712333

Gene position: 1947242-1949611 (Clockwise)

Preceding gene: 59712332

Following gene: 59712335

Centisome position: 67.2

GC content: 41.31

Gene sequence:

>2370_bases
ATGCACAACGTAACTCCAATTAATCAATACCCGAAATTCTGGGCAGAATGCTATGGAACGGCTCCGTTTCTACCAACCTC
TCGTAAAGAGATGGAACAATTAGGATGGGATAGCTGCGACATCATTATTGTTACCGGAGATGCGTATGTTGACCATCCAA
GTTTTGGTATGGCGATTATTGGACGTTTACTTGAATCTCAAGGTTTCCGTGTTGGTATTATTGCTCAGCCTAAATGGGAC
AATAAAGATGCGTTCATGAAGCTAGGAAAACCAAATTTATTTTTTGGTATTACTGCTGGCAACATGGATTCAATGATCAA
CCGCTATACATCAGATAAAAAACTTCGCCACGATGACGCCTACACGCCAAATAACGAAGGCGGAAAACGTCCTGATCGTG
CTGTTCTTGTTTACTCGCAGCGTTGTCGTGAGGCTTTCAAAGACACACCGATTGTTTTAGGCGGTATTGAAGCAAGCTTA
CGCCGTTTAGCGCACTACGATTACTGGTCTGATAAAGTTCGCCGCTCAGTATTATTTGATGCAAAGGGCGACATTCTTCT
TTTTGGTAATGCAGAACGTGCATTAGTTGAAGTCGCTCATCGTCTTGCTAATGGCGAAGACGTAAAAACAATGACCAACA
TTCGTGGTACCGCAGTGAATTTACCTGCTGAACCAGAAGGCTTTAAGATCATTGATTCATCGCGCATTGAAAAGCCAAGC
CAAGCCGTCTTTGTTCCTCAAAACCCTTACGAAACTGAAGAACAATGTGAGAGTAATAAAGCGGATGCTAAAGAAGACAA
GCCGCAAGTTATTACCGTTCGTCCATCACGACATGACGCAAAAACGACGGCAGTTCGACTTCCTCCATTCGAGAAGTTAA
ATAATGACCGTATTCTTTATGCTCATGCTAGCCGTGTTATGCATTTAGAAACCAATCCATACTCTGGACGTGCGCTAATT
CAACGCCACGGTGACCGTGAATTATGGGTAAACCAAGCGCCTATTCCACTCACGACAGAAGAAATGGATTTTGTGTTTGA
TTTACCTTTTGCTCGTGTTCCTCATCCAATGTACGGCAAAGCAAAAATCCCTGCATATGACATGATTAAAACATCGGTCA
ATATTATGCGTGGCTGTTTTGGTGGTTGTTCATTCTGTAGTATCACAGAACACGAAGGTCGCATCATTCAAAACCGTTCA
AAAGAATCCATTTTGAACGAGTTAGAAGAAATTCGCGACAAAGTACCTGGATTTACAGGTACGATTTCAGATCTTGGTGG
TCCAACAGCCAACATGTATCGTTTAGGTTGCTCAGTACCTAAAGCAGAAGCGACATGTCGTCGTCCATCATGCGTATTCC
CTAAGATCTGTGAAAAGCTAAATACTGATCATAAACATACGATTGATTTATATCGTGAAGCACGAAAAGTAAAAGGCGTG
AAAAAAGTCCTAATCGCATCAGGTGTACGTTATGATTTAGCAATTGAATCTCCTGAATACGTTCGTGAATTAGTGACACA
TCACGTTGGTGGTTATTTAAAAATTGCCCCAGAACATACTGAAAAAGGTCCATTAGATTTAATGATGAAGCCGGGTATGG
GGACGTACGATCGCTTCAAGTCTATGTTTGAAAAATACAGCCAAGAAGCAGGCAAAAAACAATATTTAATTCCTTACTTC
ATCTCAGCGCACCCGGGAACAGAAGATGAGGATATGCTTAATCTTGCTCTTTGGCTTAAGAAGAATAATTTTGAATGTGA
CCAAGTTCAGAACTTCTATCCATCGCCTATGTGTAATGCAACATCCATGTATTATTCAGAAACGAACCCATTAAAACGCG
TAAAATACAAAAAGCGTGAAGATGTACCAGTAGCTAAAGGTGAACGTCAACGCCGATTACATAAAGCGTTACTTCGTTAT
CATGATCCTAAAAACTGGAAGTTGATCCGTGAAGCACTTATCAATATGGGTAAGAAACATTTAATTGGCGATAAGCCAAA
CTGTCTTGTTCCTGAAGAAGATTTAGATGCTCAAACACCAGCAGAACGTCGTCAAACTGGACGTCATGGTGCTAAACGCT
TTGCGACTAAACATACGAAAGGCCAATTTGATGGCGATTCACGTACGAGTAATAATAACAATCGTAACGGAAAAAATAAT
CGTAATGGCAAACCTGCAGGTCAAGGACAACAACAAAATCGTAATGGGAATGCACATTCAGAAAAACCGACATCAAGCGG
TAAGAAAAATGGTGTTCGCAACGGTTACTCTAATGGAAAGCCTAGCAATAATAGCAAGCCAAGCGGCAATAAACCGTCAG
CAAATAAGCCTTCAGGTTCAGGCCCTAAACGTAAGCCAAAACATCGTTAA

Upstream 100 bases:

>100_bases
ACGAGCACTCGAACTCCCTTACTCATAATGAGGGCTTTCTTTTCTGGTTAATCCCACCTCAAATCGGTATAATTCGGCCT
CCAAATTCTGAGGTGAACTA

Downstream 100 bases:

>100_bases
CGACTAATACAAATCGTAGTAAATATAAAAAAAGCGAACCCAATAATGAGGTTCGCTTTTTATTATCTCAAATAATAATC
ATACTATGATGGACTAGAGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 789; Mature: 789

Protein sequence:

>789_residues
MHNVTPINQYPKFWAECYGTAPFLPTSRKEMEQLGWDSCDIIIVTGDAYVDHPSFGMAIIGRLLESQGFRVGIIAQPKWD
NKDAFMKLGKPNLFFGITAGNMDSMINRYTSDKKLRHDDAYTPNNEGGKRPDRAVLVYSQRCREAFKDTPIVLGGIEASL
RRLAHYDYWSDKVRRSVLFDAKGDILLFGNAERALVEVAHRLANGEDVKTMTNIRGTAVNLPAEPEGFKIIDSSRIEKPS
QAVFVPQNPYETEEQCESNKADAKEDKPQVITVRPSRHDAKTTAVRLPPFEKLNNDRILYAHASRVMHLETNPYSGRALI
QRHGDRELWVNQAPIPLTTEEMDFVFDLPFARVPHPMYGKAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRS
KESILNELEEIRDKVPGFTGTISDLGGPTANMYRLGCSVPKAEATCRRPSCVFPKICEKLNTDHKHTIDLYREARKVKGV
KKVLIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLDLMMKPGMGTYDRFKSMFEKYSQEAGKKQYLIPYF
ISAHPGTEDEDMLNLALWLKKNNFECDQVQNFYPSPMCNATSMYYSETNPLKRVKYKKREDVPVAKGERQRRLHKALLRY
HDPKNWKLIREALINMGKKHLIGDKPNCLVPEEDLDAQTPAERRQTGRHGAKRFATKHTKGQFDGDSRTSNNNNRNGKNN
RNGKPAGQGQQQNRNGNAHSEKPTSSGKKNGVRNGYSNGKPSNNSKPSGNKPSANKPSGSGPKRKPKHR

Sequences:

>Translated_789_residues
MHNVTPINQYPKFWAECYGTAPFLPTSRKEMEQLGWDSCDIIIVTGDAYVDHPSFGMAIIGRLLESQGFRVGIIAQPKWD
NKDAFMKLGKPNLFFGITAGNMDSMINRYTSDKKLRHDDAYTPNNEGGKRPDRAVLVYSQRCREAFKDTPIVLGGIEASL
RRLAHYDYWSDKVRRSVLFDAKGDILLFGNAERALVEVAHRLANGEDVKTMTNIRGTAVNLPAEPEGFKIIDSSRIEKPS
QAVFVPQNPYETEEQCESNKADAKEDKPQVITVRPSRHDAKTTAVRLPPFEKLNNDRILYAHASRVMHLETNPYSGRALI
QRHGDRELWVNQAPIPLTTEEMDFVFDLPFARVPHPMYGKAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRS
KESILNELEEIRDKVPGFTGTISDLGGPTANMYRLGCSVPKAEATCRRPSCVFPKICEKLNTDHKHTIDLYREARKVKGV
KKVLIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLDLMMKPGMGTYDRFKSMFEKYSQEAGKKQYLIPYF
ISAHPGTEDEDMLNLALWLKKNNFECDQVQNFYPSPMCNATSMYYSETNPLKRVKYKKREDVPVAKGERQRRLHKALLRY
HDPKNWKLIREALINMGKKHLIGDKPNCLVPEEDLDAQTPAERRQTGRHGAKRFATKHTKGQFDGDSRTSNNNNRNGKNN
RNGKPAGQGQQQNRNGNAHSEKPTSSGKKNGVRNGYSNGKPSNNSKPSGNKPSANKPSGSGPKRKPKHR
>Mature_789_residues
MHNVTPINQYPKFWAECYGTAPFLPTSRKEMEQLGWDSCDIIIVTGDAYVDHPSFGMAIIGRLLESQGFRVGIIAQPKWD
NKDAFMKLGKPNLFFGITAGNMDSMINRYTSDKKLRHDDAYTPNNEGGKRPDRAVLVYSQRCREAFKDTPIVLGGIEASL
RRLAHYDYWSDKVRRSVLFDAKGDILLFGNAERALVEVAHRLANGEDVKTMTNIRGTAVNLPAEPEGFKIIDSSRIEKPS
QAVFVPQNPYETEEQCESNKADAKEDKPQVITVRPSRHDAKTTAVRLPPFEKLNNDRILYAHASRVMHLETNPYSGRALI
QRHGDRELWVNQAPIPLTTEEMDFVFDLPFARVPHPMYGKAKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRS
KESILNELEEIRDKVPGFTGTISDLGGPTANMYRLGCSVPKAEATCRRPSCVFPKICEKLNTDHKHTIDLYREARKVKGV
KKVLIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLDLMMKPGMGTYDRFKSMFEKYSQEAGKKQYLIPYF
ISAHPGTEDEDMLNLALWLKKNNFECDQVQNFYPSPMCNATSMYYSETNPLKRVKYKKREDVPVAKGERQRRLHKALLRY
HDPKNWKLIREALINMGKKHLIGDKPNCLVPEEDLDAQTPAERRQTGRHGAKRFATKHTKGQFDGDSRTSNNNNRNGKNN
RNGKPAGQGQQQNRNGNAHSEKPTSSGKKNGVRNGYSNGKPSNNSKPSGNKPSANKPSGSGPKRKPKHR

Specific function: Unknown

COG id: COG1032

COG function: function code C; Fe-S oxidoreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0313 family [H]

Homologues:

Organism=Escherichia coli, GI48994917, Length=692, Percent_Identity=66.1849710982659, Blast_Score=983, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006638
- InterPro:   IPR020612
- InterPro:   IPR007197
- InterPro:   IPR013704
- InterPro:   IPR022946 [H]

Pfam domain/function: PF04055 Radical_SAM; PF08497 Radical_SAM_N [H]

EC number: NA

Molecular weight: Translated: 89136; Mature: 89136

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS01278 UPF0004

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHNVTPINQYPKFWAECYGTAPFLPTSRKEMEQLGWDSCDIIIVTGDAYVDHPSFGMAII
CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEEEECCCEECCCCHHHHHH
GRLLESQGFRVGIIAQPKWDNKDAFMKLGKPNLFFGITAGNMDSMINRYTSDKKLRHDDA
HHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCHHCCCCC
YTPNNEGGKRPDRAVLVYSQRCREAFKDTPIVLGGIEASLRRLAHYDYWSDKVRRSVLFD
CCCCCCCCCCCCCEEEEHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHEEC
AKGDILLFGNAERALVEVAHRLANGEDVKTMTNIRGTAVNLPAEPEGFKIIDSSRIEKPS
CCCCEEEECCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCCCCEEECHHCCCCCC
QAVFVPQNPYETEEQCESNKADAKEDKPQVITVRPSRHDAKTTAVRLPPFEKLNNDRILY
CEEEECCCCCCCHHHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCHHHCCCCEEEE
AHASRVMHLETNPYSGRALIQRHGDRELWVNQAPIPLTTEEMDFVFDLPFARVPHPMYGK
EECCEEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCHHHCCCCCCCC
AKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSKESILNELEEIRDKVPGFTG
CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCHHHHHHHHHHHHHHCCCCCE
TISDLGGPTANMYRLGCSVPKAEATCRRPSCVFPKICEKLNTDHKHTIDLYREARKVKGV
EHHHCCCCCCHHEEECCCCCCCHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
KKVLIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLDLMMKPGMGTYDRFK
HHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCCCCHHHHHH
SMFEKYSQEAGKKQYLIPYFISAHPGTEDEDMLNLALWLKKNNFECDQVQNFYPSPMCNA
HHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHEEEEEEEECCCCCHHHHHCCCCCCCCCC
TSMYYSETNPLKRVKYKKREDVPVAKGERQRRLHKALLRYHDPKNWKLIREALINMGKKH
HHEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHH
LIGDKPNCLVPEEDLDAQTPAERRQTGRHGAKRFATKHTKGQFDGDSRTSNNNNRNGKNN
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
RNGKPAGQGQQQNRNGNAHSEKPTSSGKKNGVRNGYSNGKPSNNSKPSGNKPSANKPSGS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GPKRKPKHR
CCCCCCCCC
>Mature Secondary Structure
MHNVTPINQYPKFWAECYGTAPFLPTSRKEMEQLGWDSCDIIIVTGDAYVDHPSFGMAII
CCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCEEEEEECCCEECCCCHHHHHH
GRLLESQGFRVGIIAQPKWDNKDAFMKLGKPNLFFGITAGNMDSMINRYTSDKKLRHDDA
HHHHHCCCCEEEEEECCCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHCCCCHHCCCCC
YTPNNEGGKRPDRAVLVYSQRCREAFKDTPIVLGGIEASLRRLAHYDYWSDKVRRSVLFD
CCCCCCCCCCCCCEEEEHHHHHHHHHCCCCEEEECHHHHHHHHHHCCHHHHHHHHHHEEC
AKGDILLFGNAERALVEVAHRLANGEDVKTMTNIRGTAVNLPAEPEGFKIIDSSRIEKPS
CCCCEEEECCCHHHHHHHHHHHCCCCCHHHHHCCCCEEEECCCCCCCCEEECHHCCCCCC
QAVFVPQNPYETEEQCESNKADAKEDKPQVITVRPSRHDAKTTAVRLPPFEKLNNDRILY
CEEEECCCCCCCHHHHHCCCCCCCCCCCCEEEECCCCCCCCCEEEECCCHHHCCCCEEEE
AHASRVMHLETNPYSGRALIQRHGDRELWVNQAPIPLTTEEMDFVFDLPFARVPHPMYGK
EECCEEEEEECCCCCCHHHHHHCCCCEEEECCCCCCCCCCCCCEEEECCHHHCCCCCCCC
AKIPAYDMIKTSVNIMRGCFGGCSFCSITEHEGRIIQNRSKESILNELEEIRDKVPGFTG
CCCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCHHHHHHHHHHHHHHCCCCCE
TISDLGGPTANMYRLGCSVPKAEATCRRPSCVFPKICEKLNTDHKHTIDLYREARKVKGV
EHHHCCCCCCHHEEECCCCCCCHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
KKVLIASGVRYDLAIESPEYVRELVTHHVGGYLKIAPEHTEKGPLDLMMKPGMGTYDRFK
HHHHHHCCCEEEEEECCHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEECCCCCHHHHHH
SMFEKYSQEAGKKQYLIPYFISAHPGTEDEDMLNLALWLKKNNFECDQVQNFYPSPMCNA
HHHHHHHHHCCCCEEEEEEEEECCCCCCCHHHEEEEEEEECCCCCHHHHHCCCCCCCCCC
TSMYYSETNPLKRVKYKKREDVPVAKGERQRRLHKALLRYHDPKNWKLIREALINMGKKH
HHEEECCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHH
LIGDKPNCLVPEEDLDAQTPAERRQTGRHGAKRFATKHTKGQFDGDSRTSNNNNRNGKNN
HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
RNGKPAGQGQQQNRNGNAHSEKPTSSGKKNGVRNGYSNGKPSNNSKPSGNKPSANKPSGS
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
GPKRKPKHR
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12620739 [H]