Click here to switch to the map view.

The map label for this gene is recR [H]

Identifier: 59712292

GI number: 59712292

Start: 1896827

End: 1897429

Strand: Reverse

Name: recR [H]

Synonym: VF_1685

Alternate gene names: 59712292

Gene position: 1897429-1896827 (Counterclockwise)

Preceding gene: 59712293

Following gene: 59712290

Centisome position: 65.48

GC content: 42.95

Gene sequence:

>603_bases
ATGCGAACCAGTGGTTTACTAGAACAATTAATGGAATCATTACGATGTCTACCAGGCGTTGGCCCAAAATCAGCTCAGCG
AATGGCTTTTCACTTGCTTCAACGTAATCGCCAAGGGGGAATGCAGCTAGCTGATGCTCTTTCTCAAGCGATGTCAGAGA
TTGGTCATTGCTCGGAATGTCGAACATTTACTGAGGAAGATACCTGCGCTATTTGTTTGAATCCAAAGCGTCAAGCAAGT
GGTGAAATGTGTATTGTTGAAAGTCCTGCAGATATTGTTGCGGTAGAAGCAACAGGGCAGTTTTCTGGGCGTTACTTTGT
ACTAATGGGACATTTATCGCCACTGGATGGTATTGGTCCAAGCGATATTGGTTTAGATTTATTAGATCATCGTTTGAATC
GTGGTGATATTAAAGAAGTTATTCTTGCAACTAACCCAACTGTTGAGGGTGAAGCAACGGCACACTATATTGCTGAGCTT
TGCCAAGAGCACCAAGTACCAGCTAGTCGAATAGCACATGGTGTTCCAATGGGCGGTGAATTAGAATTAGTTGATGGTAC
AACGTTATCTCACTCTATTTTAGGCCGTCAGAAGCTTTATTAG

Upstream 100 bases:

>100_bases
TTATCTTTATGATAAAGCTGAGATTAATAACGCATTATTAGTCTTGGAATAATTAGGCGGCTCAGTGGCTGCCTTTTTCT
TTTTAGGAATATAAGAAACT

Downstream 100 bases:

>100_bases
TTTTGAGAAATAGAGTTGGAATTTGGAGTAGTCCGCCTGCGATTGCTCCAAATAAATGTGCCTCTGTCGCTACTTTTGCA
TTTATTAATGAGATGGTCGA

Product: recombination protein RecR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 200; Mature: 200

Protein sequence:

>200_residues
MRTSGLLEQLMESLRCLPGVGPKSAQRMAFHLLQRNRQGGMQLADALSQAMSEIGHCSECRTFTEEDTCAICLNPKRQAS
GEMCIVESPADIVAVEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDLLDHRLNRGDIKEVILATNPTVEGEATAHYIAEL
CQEHQVPASRIAHGVPMGGELELVDGTTLSHSILGRQKLY

Sequences:

>Translated_200_residues
MRTSGLLEQLMESLRCLPGVGPKSAQRMAFHLLQRNRQGGMQLADALSQAMSEIGHCSECRTFTEEDTCAICLNPKRQAS
GEMCIVESPADIVAVEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDLLDHRLNRGDIKEVILATNPTVEGEATAHYIAEL
CQEHQVPASRIAHGVPMGGELELVDGTTLSHSILGRQKLY
>Mature_200_residues
MRTSGLLEQLMESLRCLPGVGPKSAQRMAFHLLQRNRQGGMQLADALSQAMSEIGHCSECRTFTEEDTCAICLNPKRQAS
GEMCIVESPADIVAVEATGQFSGRYFVLMGHLSPLDGIGPSDIGLDLLDHRLNRGDIKEVILATNPTVEGEATAHYIAEL
CQEHQVPASRIAHGVPMGGELELVDGTTLSHSILGRQKLY

Specific function: May play a role in DNA repair. It seems to be involved in an recBC-independent recombinational process of DNA repair. It may act with recF and recO [H]

COG id: COG0353

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 Toprim domain [H]

Homologues:

Organism=Escherichia coli, GI1786678, Length=199, Percent_Identity=75.8793969849246, Blast_Score=318, Evalue=2e-88,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003583
- InterPro:   IPR000093
- InterPro:   IPR006171
- InterPro:   IPR015967 [H]

Pfam domain/function: PF02132 RecR; PF01751 Toprim [H]

EC number: NA

Molecular weight: Translated: 21654; Mature: 21654

Theoretical pI: Translated: 5.26; Mature: 5.26

Prosite motif: PS01300 RECR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.5 %Cys     (Translated Protein)
4.0 %Met     (Translated Protein)
7.5 %Cys+Met (Translated Protein)
3.5 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
7.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRTSGLLEQLMESLRCLPGVGPKSAQRMAFHLLQRNRQGGMQLADALSQAMSEIGHCSEC
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHH
RTFTEEDTCAICLNPKRQASGEMCIVESPADIVAVEATGQFSGRYFVLMGHLSPLDGIGP
CCCCCCCCEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCCCCC
SDIGLDLLDHRLNRGDIKEVILATNPTVEGEATAHYIAELCQEHQVPASRIAHGVPMGGE
CHHHHHHHHHHCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCE
LELVDGTTLSHSILGRQKLY
EEEECCCCHHHHHHHHHCCC
>Mature Secondary Structure
MRTSGLLEQLMESLRCLPGVGPKSAQRMAFHLLQRNRQGGMQLADALSQAMSEIGHCSEC
CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHH
RTFTEEDTCAICLNPKRQASGEMCIVESPADIVAVEATGQFSGRYFVLMGHLSPLDGIGP
CCCCCCCCEEEEECCCCCCCCCEEEEECCCCEEEEEECCCCCCEEEEEEECCCCCCCCCC
SDIGLDLLDHRLNRGDIKEVILATNPTVEGEATAHYIAELCQEHQVPASRIAHGVPMGGE
CHHHHHHHHHHCCCCCHHHEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCCCE
LELVDGTTLSHSILGRQKLY
EEEECCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA