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The map label for this gene is yccS [H]

Identifier: 59712230

GI number: 59712230

Start: 1821916

End: 1824099

Strand: Direct

Name: yccS [H]

Synonym: VF_1623

Alternate gene names: 59712230

Gene position: 1821916-1824099 (Clockwise)

Preceding gene: 59712228

Following gene: 59712231

Centisome position: 62.88

GC content: 38.97

Gene sequence:

>2184_bases
GTGACTTATCGCCAGATTTTTCGCCAATATTGGGCCAATAAAACCATCAATTATAGTATCAGAGTATTACTCGCTCTTGT
TGGTGCTGTTATTCCCTGTTGGTACCTTGAGCAAAATACGGCAATTACTCCACTCATTCTTGGAATTATTGCGGCCGCAT
TAGCTGAAACTGACGATAAACTATCCGGAAGACTCAAGGCCTTATTCTTCACTTTCATCTGTTTTGCTATTGCCGCTTTC
TCCATTGAGATTCTCTTTCATACACCAATTTTATTTGCGATTGGATTATTTTGCTCAACCATTGCATTTATTATGCTTGG
AGCTCTAGGGCCTCGCTACGCTAGCATTGCTTTTGGCTCACTACTTATCGCTATCTATACCATGCTAGGCGCTGCCGAAA
GTCCAAATCTTTGGTATCAGCCAACCCTTTTACTAGGGGGTGCAGCTTGGTATTACACTATCTCGTTAACATGGCAAATA
TTTTGGCCATTGCAGCCAGTTCAACAAAACCTAGCAACAGTATTTGAAACCATGGCTACGTACTTAAATAGTAAAAGTGA
GTTATTCCATCCTGTAACCAATCTAGTTCCACAGCCTTATCGCCTTCAAGAAGCCAAAAATAATGCTCAAATGGTGACTG
CACTTAATAATAGTAAAGCATCGTTATTAACAAGAGCGAAGCGTGGCCATGTGGTTGGTGCTAGCGATAAGTTTTTAAAA
ATATATTTTATTGCACAAGACATTCATGAGCGAGTGAGTTCTAGTCATTATCGCTATCAAGATTTAGCTAATACGTTTAA
TCGCAGCGATATTTTATTCCGCTTTAAACATTTACTTCATAGCCAATCGTTAGCCTGTAAAGAAGTTGCTCGCTGTTTAT
CTCTTGGTTTACCTTATCAACATGATAACGCTTCTATTTTTGCTTTAGATGAATTACAGCAATCACTTATTGCATTAAAA
GAGCAACAAAAACCAGAATGGCGGTTATCTCTTATTCAATTGGATTACCTGTTTAATAACTTAGCAACGGTTGAGCGCCA
ATTTGCTAATATTAGTAATCCTGAAAGGGCGTTAGAAACAGAAGAAGATACAGTCTTAGCAGATCAAGGCGCTCACACGC
CTAAGGCCATGTGGCAACGCTTAAGAGCAAACTTAACTACAGATTCAGTCTTATTTAGACACGCTATTCGCATGGCGTTA
GCCTTAACTGCTGGTTATGGCATTATTCAAGCATTTGAATTAGAACGTGGTTATTGGATTTTGCTCACTACCTTATTTGT
TTGTCAGCCAAACTACAGTGCAACTAAAGAAAAACTTGTGGCGCGAGTTGCTGGGACTTTAATTGGTTTATTGGCAGGAA
CCACCCTACTGGTTCTATTTCCATCTCTAGATAGCCAACTCGTATTAATGGTTATTTCTGGCGTATTGTTCTTTGCGTTC
CGCCTTGCTAACTATGGATTTGCGACTGCCTTTATTACAATGCTTGTTTTATTCTGCTTTAACCAATTAGGTGAAGGCTA
CGCAGTGATTTTACCAAGATTGGGGGATACACTCGTTGGCTGTGCTCTTGCGGTATTAGCGGTAACCTATATTCTTCCCG
ATTGGCAAGCAAAACGTCTAGATAAAGTTATGTCTGATACGGTGCATGCTCACCAAGATTACTTATCGAATATCATTTCT
CAATATCGAGCAGGAAAGAAAGATTCTCTTCAGTATCGTTTATCACGCCGTGAAGCTCATAATAGTGAGGCTGCACTTAG
TTCGGCGATCAGTAACATGTTGATTGAACCCGGTAAATATCAAACAGCTGTCGATGAATCCTTCCGCTTTTTATGCCTGT
GTCATGCGATGCTAAGCTATATCTCCGCACTTGGGGCTCATCGTATGCGTTTAAAAGATGAAGAAACGCATCAATTAGTT
GCTGAATCACATCGTATTATTCACGCTCATTTAAATCAGATTCAATGCCAATTAAATAATACTGATTGTAGTGATAAACT
AAATACCGTTAAAGAAGAGAGTATCGAAAAACGTCTTTCAGAATGGCGTGATGAAGATGAAAACTCAATTAGAATGGTAT
TACAGCAATTGCATTTAATTCACCAAATATTACCTGAGATGCATACTTTATCTGCTTCACTAAGTACACAAATTCACAAA
ATGAAAACAAGTGCTAAAGTTTGA

Upstream 100 bases:

>100_bases
TGTCTCAGATCAGTATTAAGACAATGATTCAGATTTAGACTCTTTCTTCTCCGTATGACTTTGTTATGATAGGTTTTTTC
CCTAAGCAGAAAGTAATATC

Downstream 100 bases:

>100_bases
AGTCGATCTGTTATTCCGGTCGAATAATTGATGTTTCTCAATTATTTTTAGCGCAAGACGCCTACACTATTATTAAAGGG
AGTTCATATTTGGACTCCTT

Product: inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 727; Mature: 726

Protein sequence:

>727_residues
MTYRQIFRQYWANKTINYSIRVLLALVGAVIPCWYLEQNTAITPLILGIIAAALAETDDKLSGRLKALFFTFICFAIAAF
SIEILFHTPILFAIGLFCSTIAFIMLGALGPRYASIAFGSLLIAIYTMLGAAESPNLWYQPTLLLGGAAWYYTISLTWQI
FWPLQPVQQNLATVFETMATYLNSKSELFHPVTNLVPQPYRLQEAKNNAQMVTALNNSKASLLTRAKRGHVVGASDKFLK
IYFIAQDIHERVSSSHYRYQDLANTFNRSDILFRFKHLLHSQSLACKEVARCLSLGLPYQHDNASIFALDELQQSLIALK
EQQKPEWRLSLIQLDYLFNNLATVERQFANISNPERALETEEDTVLADQGAHTPKAMWQRLRANLTTDSVLFRHAIRMAL
ALTAGYGIIQAFELERGYWILLTTLFVCQPNYSATKEKLVARVAGTLIGLLAGTTLLVLFPSLDSQLVLMVISGVLFFAF
RLANYGFATAFITMLVLFCFNQLGEGYAVILPRLGDTLVGCALAVLAVTYILPDWQAKRLDKVMSDTVHAHQDYLSNIIS
QYRAGKKDSLQYRLSRREAHNSEAALSSAISNMLIEPGKYQTAVDESFRFLCLCHAMLSYISALGAHRMRLKDEETHQLV
AESHRIIHAHLNQIQCQLNNTDCSDKLNTVKEESIEKRLSEWRDEDENSIRMVLQQLHLIHQILPEMHTLSASLSTQIHK
MKTSAKV

Sequences:

>Translated_727_residues
MTYRQIFRQYWANKTINYSIRVLLALVGAVIPCWYLEQNTAITPLILGIIAAALAETDDKLSGRLKALFFTFICFAIAAF
SIEILFHTPILFAIGLFCSTIAFIMLGALGPRYASIAFGSLLIAIYTMLGAAESPNLWYQPTLLLGGAAWYYTISLTWQI
FWPLQPVQQNLATVFETMATYLNSKSELFHPVTNLVPQPYRLQEAKNNAQMVTALNNSKASLLTRAKRGHVVGASDKFLK
IYFIAQDIHERVSSSHYRYQDLANTFNRSDILFRFKHLLHSQSLACKEVARCLSLGLPYQHDNASIFALDELQQSLIALK
EQQKPEWRLSLIQLDYLFNNLATVERQFANISNPERALETEEDTVLADQGAHTPKAMWQRLRANLTTDSVLFRHAIRMAL
ALTAGYGIIQAFELERGYWILLTTLFVCQPNYSATKEKLVARVAGTLIGLLAGTTLLVLFPSLDSQLVLMVISGVLFFAF
RLANYGFATAFITMLVLFCFNQLGEGYAVILPRLGDTLVGCALAVLAVTYILPDWQAKRLDKVMSDTVHAHQDYLSNIIS
QYRAGKKDSLQYRLSRREAHNSEAALSSAISNMLIEPGKYQTAVDESFRFLCLCHAMLSYISALGAHRMRLKDEETHQLV
AESHRIIHAHLNQIQCQLNNTDCSDKLNTVKEESIEKRLSEWRDEDENSIRMVLQQLHLIHQILPEMHTLSASLSTQIHK
MKTSAKV
>Mature_726_residues
TYRQIFRQYWANKTINYSIRVLLALVGAVIPCWYLEQNTAITPLILGIIAAALAETDDKLSGRLKALFFTFICFAIAAFS
IEILFHTPILFAIGLFCSTIAFIMLGALGPRYASIAFGSLLIAIYTMLGAAESPNLWYQPTLLLGGAAWYYTISLTWQIF
WPLQPVQQNLATVFETMATYLNSKSELFHPVTNLVPQPYRLQEAKNNAQMVTALNNSKASLLTRAKRGHVVGASDKFLKI
YFIAQDIHERVSSSHYRYQDLANTFNRSDILFRFKHLLHSQSLACKEVARCLSLGLPYQHDNASIFALDELQQSLIALKE
QQKPEWRLSLIQLDYLFNNLATVERQFANISNPERALETEEDTVLADQGAHTPKAMWQRLRANLTTDSVLFRHAIRMALA
LTAGYGIIQAFELERGYWILLTTLFVCQPNYSATKEKLVARVAGTLIGLLAGTTLLVLFPSLDSQLVLMVISGVLFFAFR
LANYGFATAFITMLVLFCFNQLGEGYAVILPRLGDTLVGCALAVLAVTYILPDWQAKRLDKVMSDTVHAHQDYLSNIISQ
YRAGKKDSLQYRLSRREAHNSEAALSSAISNMLIEPGKYQTAVDESFRFLCLCHAMLSYISALGAHRMRLKDEETHQLVA
ESHRIIHAHLNQIQCQLNNTDCSDKLNTVKEESIEKRLSEWRDEDENSIRMVLQQLHLIHQILPEMHTLSASLSTQIHKM
KTSAKV

Specific function: Unknown

COG id: COG1289

COG function: function code S; Predicted membrane protein

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yccS/yhfK family [H]

Homologues:

Organism=Escherichia coli, GI87081808, Length=727, Percent_Identity=42.7785419532325, Blast_Score=541, Evalue=1e-155,
Organism=Escherichia coli, GI87082248, Length=621, Percent_Identity=24.7987117552335, Blast_Score=130, Evalue=3e-31,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010019
- InterPro:   IPR010020 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 82080; Mature: 81949

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTYRQIFRQYWANKTINYSIRVLLALVGAVIPCWYLEQNTAITPLILGIIAAALAETDDK
CCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCHH
LSGRLKALFFTFICFAIAAFSIEILFHTPILFAIGLFCSTIAFIMLGALGPRYASIAFGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LLIAIYTMLGAAESPNLWYQPTLLLGGAAWYYTISLTWQIFWPLQPVQQNLATVFETMAT
HHHHHHHHHCCCCCCCCEECCHHHCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHH
YLNSKSELFHPVTNLVPQPYRLQEAKNNAQMVTALNNSKASLLTRAKRGHVVGASDKFLK
HHCCHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEECCCCCEEE
IYFIAQDIHERVSSSHYRYQDLANTFNRSDILFRFKHLLHSQSLACKEVARCLSLGLPYQ
EEEHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
HDNASIFALDELQQSLIALKEQQKPEWRLSLIQLDYLFNNLATVERQFANISNPERALET
CCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
EEDTVLADQGAHTPKAMWQRLRANLTTDSVLFRHAIRMALALTAGYGIIQAFELERGYWI
CCCCEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCHHH
LLTTLFVCQPNYSATKEKLVARVAGTLIGLLAGTTLLVLFPSLDSQLVLMVISGVLFFAF
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHH
RLANYGFATAFITMLVLFCFNQLGEGYAVILPRLGDTLVGCALAVLAVTYILPDWQAKRL
HHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECHHCHHHHHHHHHHHHHHHHCCCHHHHHH
DKVMSDTVHAHQDYLSNIISQYRAGKKDSLQYRLSRREAHNSEAALSSAISNMLIEPGKY
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
QTAVDESFRFLCLCHAMLSYISALGAHRMRLKDEETHQLVAESHRIIHAHLNQIQCQLNN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEECC
TDCSDKLNTVKEESIEKRLSEWRDEDENSIRMVLQQLHLIHQILPEMHTLSASLSTQIHK
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKTSAKV
HHHHCCC
>Mature Secondary Structure 
TYRQIFRQYWANKTINYSIRVLLALVGAVIPCWYLEQNTAITPLILGIIAAALAETDDK
CHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCCHH
LSGRLKALFFTFICFAIAAFSIEILFHTPILFAIGLFCSTIAFIMLGALGPRYASIAFGS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
LLIAIYTMLGAAESPNLWYQPTLLLGGAAWYYTISLTWQIFWPLQPVQQNLATVFETMAT
HHHHHHHHHCCCCCCCCEECCHHHCCCEEEEEEEEEEEEEECCCHHHHHHHHHHHHHHHH
YLNSKSELFHPVTNLVPQPYRLQEAKNNAQMVTALNNSKASLLTRAKRGHVVGASDKFLK
HHCCHHHHHHHHHHHCCCCHHHHHCCCCCEEEEEECCCHHHHHHHHHCCCEECCCCCEEE
IYFIAQDIHERVSSSHYRYQDLANTFNRSDILFRFKHLLHSQSLACKEVARCLSLGLPYQ
EEEHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCC
HDNASIFALDELQQSLIALKEQQKPEWRLSLIQLDYLFNNLATVERQFANISNPERALET
CCCCCEEEHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCC
EEDTVLADQGAHTPKAMWQRLRANLTTDSVLFRHAIRMALALTAGYGIIQAFELERGYWI
CCCCEEECCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHEECCCCHHH
LLTTLFVCQPNYSATKEKLVARVAGTLIGLLAGTTLLVLFPSLDSQLVLMVISGVLFFAF
HHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHEECCCCHHHHHHHHHHHHHHHH
RLANYGFATAFITMLVLFCFNQLGEGYAVILPRLGDTLVGCALAVLAVTYILPDWQAKRL
HHHCCCHHHHHHHHHHHHHHHHHCCCEEEEECHHCHHHHHHHHHHHHHHHHCCCHHHHHH
DKVMSDTVHAHQDYLSNIISQYRAGKKDSLQYRLSRREAHNSEAALSSAISNMLIEPGKY
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCC
QTAVDESFRFLCLCHAMLSYISALGAHRMRLKDEETHQLVAESHRIIHAHLNQIQCQLNN
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHEEEECC
TDCSDKLNTVKEESIEKRLSEWRDEDENSIRMVLQQLHLIHQILPEMHTLSASLSTQIHK
CCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
MKTSAKV
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]