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The map label for this gene is oppB [H]

Identifier: 59712203

GI number: 59712203

Start: 1789122

End: 1790042

Strand: Reverse

Name: oppB [H]

Synonym: VF_1596

Alternate gene names: 59712203

Gene position: 1790042-1789122 (Counterclockwise)

Preceding gene: 59712204

Following gene: 59712202

Centisome position: 61.78

GC content: 38.22

Gene sequence:

>921_bases
ATGTTTCAATTCATTATCAAACGGATACTTGAAGCAATTCCAACAATGTTGGTTTTGATCACCATTTCTTTTTTCTTAAT
GAGATTTGCCCCTGGCAATCCATTTTCAACAGAACGCCCACTTCCTCCGGAAGTTATGGCGAATATCAATGCAAAATACG
GTTTAGATAAACCGGTATTCGAACAATATACGACTTATCTTGGTAATATCTTACAAGGTGATTTCGGTCCTTCATTTAAA
TATCAAGATTATACAGTAAATGAATTGGTTGAAGCGGCATTACCAGTGTCAGCTAAAGTTGGTTTTTTTGCGTTTATTTT
TACGGTGGTACTTGGGGTTACTGTCGGTACCTTAGCCGCATTAAGGCAAAATACATGGCTTGATTATACGATTATGTCCA
CCGCCATGGTGGGGGTGGTGATGCCATCCTTTGTATTGGCCCCTGCACTGATTTATCTCTTTTCTATTGAGCTTGGCTGG
TTCCCTGCTGGTGGTTGGCATGATGGCTCATTTAAATACATGTTCTTACCAATTCTAGGTATGTCATTCCTTTATGTTGC
GACTTTTGCTCGTATTACTCGTGGTAGCATGATTGAAACATTAAACAGTAACTTTATTCGAACTGCTCGTGCGAAGGGAT
TAAGTTATCGCTACATTATTATTAAACATGCACTAAAGCCTGCAATGTTACCTGTTGTTTCTTATATGGGACCAGCATTT
GTCGGCATTATTACCGGTTCTGTTGTTATTGAAACGATTTTTGGTCTACCTGGAATTGGTAAGCTTTTCGTCAATGCAGC
ATTTAACCGTGATTATTCGTTAGTAATGGGGGTAACCATTCTGATTGGTTTCCTATTTATCTTATTCAACGCAATTGTTG
ATGTATTACTAGCAATTATCGACCCGAAAATTCGTTATTAA

Upstream 100 bases:

>100_bases
AGCAAAATAAAATTATAAAAAATGTCACTACACGCAGGATCGCGTGTAGTGACTAGATCCATCTTTTAATATTTTTTGTC
ACAGACTGGAAGAGTGAATT

Downstream 100 bases:

>100_bases
TAGGGAATGGACGCATGTTAACGAAAAAAGAAAATTTAGAAGCGATTGAAAAATTCTCTGAAAGTTTGGAGATTGAGGGT
CGCAGTCTATGGCAAGACGC

Product: oligopeptide transporter permease

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 306; Mature: 306

Protein sequence:

>306_residues
MFQFIIKRILEAIPTMLVLITISFFLMRFAPGNPFSTERPLPPEVMANINAKYGLDKPVFEQYTTYLGNILQGDFGPSFK
YQDYTVNELVEAALPVSAKVGFFAFIFTVVLGVTVGTLAALRQNTWLDYTIMSTAMVGVVMPSFVLAPALIYLFSIELGW
FPAGGWHDGSFKYMFLPILGMSFLYVATFARITRGSMIETLNSNFIRTARAKGLSYRYIIIKHALKPAMLPVVSYMGPAF
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDVLLAIIDPKIRY

Sequences:

>Translated_306_residues
MFQFIIKRILEAIPTMLVLITISFFLMRFAPGNPFSTERPLPPEVMANINAKYGLDKPVFEQYTTYLGNILQGDFGPSFK
YQDYTVNELVEAALPVSAKVGFFAFIFTVVLGVTVGTLAALRQNTWLDYTIMSTAMVGVVMPSFVLAPALIYLFSIELGW
FPAGGWHDGSFKYMFLPILGMSFLYVATFARITRGSMIETLNSNFIRTARAKGLSYRYIIIKHALKPAMLPVVSYMGPAF
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDVLLAIIDPKIRY
>Mature_306_residues
MFQFIIKRILEAIPTMLVLITISFFLMRFAPGNPFSTERPLPPEVMANINAKYGLDKPVFEQYTTYLGNILQGDFGPSFK
YQDYTVNELVEAALPVSAKVGFFAFIFTVVLGVTVGTLAALRQNTWLDYTIMSTAMVGVVMPSFVLAPALIYLFSIELGW
FPAGGWHDGSFKYMFLPILGMSFLYVATFARITRGSMIETLNSNFIRTARAKGLSYRYIIIKHALKPAMLPVVSYMGPAF
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDVLLAIIDPKIRY

Specific function: Part of the binding-protein-dependent transport system for oligopeptides; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0601

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787497, Length=306, Percent_Identity=66.9934640522876, Blast_Score=431, Evalue=1e-122,
Organism=Escherichia coli, GI1787053, Length=308, Percent_Identity=35.7142857142857, Blast_Score=212, Evalue=3e-56,
Organism=Escherichia coli, GI1789965, Length=338, Percent_Identity=34.3195266272189, Blast_Score=199, Evalue=2e-52,
Organism=Escherichia coli, GI1789888, Length=310, Percent_Identity=32.9032258064516, Blast_Score=183, Evalue=1e-47,
Organism=Escherichia coli, GI1788504, Length=362, Percent_Identity=27.3480662983425, Blast_Score=140, Evalue=1e-34,
Organism=Escherichia coli, GI1787761, Length=316, Percent_Identity=29.746835443038, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787550, Length=273, Percent_Identity=26.3736263736264, Blast_Score=122, Evalue=2e-29,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 34010; Mature: 34010

Theoretical pI: Translated: 9.61; Mature: 9.61

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFQFIIKRILEAIPTMLVLITISFFLMRFAPGNPFSTERPLPPEVMANINAKYGLDKPVF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHH
EQYTTYLGNILQGDFGPSFKYQDYTVNELVEAALPVSAKVGFFAFIFTVVLGVTVGTLAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LRQNTWLDYTIMSTAMVGVVMPSFVLAPALIYLFSIELGWFPAGGWHDGSFKYMFLPILG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
MSFLYVATFARITRGSMIETLNSNFIRTARAKGLSYRYIIIKHALKPAMLPVVSYMGPAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDVLLAII
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC
>Mature Secondary Structure
MFQFIIKRILEAIPTMLVLITISFFLMRFAPGNPFSTERPLPPEVMANINAKYGLDKPVF
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCHHH
EQYTTYLGNILQGDFGPSFKYQDYTVNELVEAALPVSAKVGFFAFIFTVVLGVTVGTLAA
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH
LRQNTWLDYTIMSTAMVGVVMPSFVLAPALIYLFSIELGWFPAGGWHDGSFKYMFLPILG
HHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHH
MSFLYVATFARITRGSMIETLNSNFIRTARAKGLSYRYIIIKHALKPAMLPVVSYMGPAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHHHHHHHHHHH
VGIITGSVVIETIFGLPGIGKLFVNAAFNRDYSLVMGVTILIGFLFILFNAIVDVLLAII
HHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
DPKIRY
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]