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The map label for this gene is ycfD [H]

Identifier: 59712199

GI number: 59712199

Start: 1784905

End: 1786089

Strand: Direct

Name: ycfD [H]

Synonym: VF_1592

Alternate gene names: 59712199

Gene position: 1784905-1786089 (Clockwise)

Preceding gene: 59712198

Following gene: 59712205

Centisome position: 61.6

GC content: 38.57

Gene sequence:

>1185_bases
ATGCCCGATCTTCGGGCATTTTTATTGGAAAAAATAATGTACCAATTAAGCTTTTCGCTACAAGAATTCCTATCTGAGTA
TTGGCAAAAAAAACCTGTAATCATCAAAGACGGATTTGAGAACTTTCAAGATCCTGTTACTCCAGAAGAACTAGCAGGAC
TGACCTTAGAAAACGACGTCGATTCTCGATTCATTTCTAACGCTAATAACGAATGGAAAGCAGAGCACGGGCCTTTATCT
GAAGAGCTTTATGAAACTCTTGGAGAGACCAATTGGTCTATTATCGTCCAAGCAGCTAATCACTGGCACAAAGGCGCAGC
AGAATTGTTCAAGCCTTTTAAACAAATGCCCAATTGGTTATTTGATGACATCATGATCAGCTACTCAGTGCCTCATGGCG
GTGTTGGTCCACATATTGATCAATATGATGTATTTATCATCCAAGGTCAGGGGAAACGTCATTGGCGTGTTGGCGATATC
GGTGAATATCAAGAAGAACATAGACATTCTGCATTGAAACAAATTACTGGATTTGAACCGATTATCGATCAAATTCTAGA
GCCTGGTGACATTCTTTATATCCCACCCGGCTTCCCGCATGATGGCTACGCCTTAGAGCCATCTATGAGTTATTCAGCAG
GTTTTCGTTCTCCAAAAGAACAAGAGTTAATCAGTAATTTTGCTGACTTCATTATTGAGAATGAAAAAGGTGATGTTCAT
TATCATAACCCTGAACTCTCGACACAAAGTCATGGTAGCGAAATCACAACAAGAAGCTTTGAAGACTTAAAAGCGATGAT
GTTAAGCGCAATGTCAGATGAGCAAACGCTAAAGCAGTTTATGGGAGAGTACTTAAGTAACTCTCGTCATCATTTAAATA
TCATTCCAGATTCTGAAAAGTGGACAACTGAAGAGTTGCTTAATTACTTACATTCAGGTCAAGCATTGATCAAAGTGGCA
GGCGTCCGCTCGTTTTACCATGAAGTAGAATCATGTGAAGAAAACATGACTCTTTTTATTGATGGTGAAAGTTATGTTTT
CCCATTAAAAATGAAAAATGATGTGATCACATTATGTGAAGCTAATGAGGTAACACTGAACAATATTGAACAGCTTTTAC
TAGACCCTCATTCTGTCGCTAACTTACTTCAACTGGTAAATATCGGATATTTTTACGCGGAATAA

Upstream 100 bases:

>100_bases
CACCATCAAAAGAAACGATGGAAAAAATGGTCGAAATCCTAAGCCAATACCACAACAACGTAAAATATTAATTACGTCGT
TCCCTTTTTAAGCAACACAA

Downstream 100 bases:

>100_bases
GTACAAAAAAAGCGCGATATAAATTGCCTATCGCGCTTAAGCCTGTCACAGGCTGAATTAAAATACATTTTTTAACCCAT
CATAAATATTATGATGGGTT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 394; Mature: 393

Protein sequence:

>394_residues
MPDLRAFLLEKIMYQLSFSLQEFLSEYWQKKPVIIKDGFENFQDPVTPEELAGLTLENDVDSRFISNANNEWKAEHGPLS
EELYETLGETNWSIIVQAANHWHKGAAELFKPFKQMPNWLFDDIMISYSVPHGGVGPHIDQYDVFIIQGQGKRHWRVGDI
GEYQEEHRHSALKQITGFEPIIDQILEPGDILYIPPGFPHDGYALEPSMSYSAGFRSPKEQELISNFADFIIENEKGDVH
YHNPELSTQSHGSEITTRSFEDLKAMMLSAMSDEQTLKQFMGEYLSNSRHHLNIIPDSEKWTTEELLNYLHSGQALIKVA
GVRSFYHEVESCEENMTLFIDGESYVFPLKMKNDVITLCEANEVTLNNIEQLLLDPHSVANLLQLVNIGYFYAE

Sequences:

>Translated_394_residues
MPDLRAFLLEKIMYQLSFSLQEFLSEYWQKKPVIIKDGFENFQDPVTPEELAGLTLENDVDSRFISNANNEWKAEHGPLS
EELYETLGETNWSIIVQAANHWHKGAAELFKPFKQMPNWLFDDIMISYSVPHGGVGPHIDQYDVFIIQGQGKRHWRVGDI
GEYQEEHRHSALKQITGFEPIIDQILEPGDILYIPPGFPHDGYALEPSMSYSAGFRSPKEQELISNFADFIIENEKGDVH
YHNPELSTQSHGSEITTRSFEDLKAMMLSAMSDEQTLKQFMGEYLSNSRHHLNIIPDSEKWTTEELLNYLHSGQALIKVA
GVRSFYHEVESCEENMTLFIDGESYVFPLKMKNDVITLCEANEVTLNNIEQLLLDPHSVANLLQLVNIGYFYAE
>Mature_393_residues
PDLRAFLLEKIMYQLSFSLQEFLSEYWQKKPVIIKDGFENFQDPVTPEELAGLTLENDVDSRFISNANNEWKAEHGPLSE
ELYETLGETNWSIIVQAANHWHKGAAELFKPFKQMPNWLFDDIMISYSVPHGGVGPHIDQYDVFIIQGQGKRHWRVGDIG
EYQEEHRHSALKQITGFEPIIDQILEPGDILYIPPGFPHDGYALEPSMSYSAGFRSPKEQELISNFADFIIENEKGDVHY
HNPELSTQSHGSEITTRSFEDLKAMMLSAMSDEQTLKQFMGEYLSNSRHHLNIIPDSEKWTTEELLNYLHSGQALIKVAG
VRSFYHEVESCEENMTLFIDGESYVFPLKMKNDVITLCEANEVTLNNIEQLLLDPHSVANLLQLVNIGYFYAE

Specific function: Unknown

COG id: COG2850

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 JmjC domain [H]

Homologues:

Organism=Escherichia coli, GI87081836, Length=381, Percent_Identity=44.8818897637795, Blast_Score=360, Evalue=1e-101,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013109
- InterPro:   IPR022777
- InterPro:   IPR014710
- InterPro:   IPR003347 [H]

Pfam domain/function: PF08007 Cupin_4 [H]

EC number: NA

Molecular weight: Translated: 45241; Mature: 45110

Theoretical pI: Translated: 4.42; Mature: 4.42

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPDLRAFLLEKIMYQLSFSLQEFLSEYWQKKPVIIKDGFENFQDPVTPEELAGLTLENDV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCCCCHHHHCCCCCCCCH
DSRFISNANNEWKAEHGPLSEELYETLGETNWSIIVQAANHWHKGAAELFKPFKQMPNWL
HHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHH
FDDIMISYSVPHGGVGPHIDQYDVFIIQGQGKRHWRVGDIGEYQEEHRHSALKQITGFEP
HHHHHEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
IIDQILEPGDILYIPPGFPHDGYALEPSMSYSAGFRSPKEQELISNFADFIIENEKGDVH
HHHHHCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCEE
YHNPELSTQSHGSEITTRSFEDLKAMMLSAMSDEQTLKQFMGEYLSNSRHHLNIIPDSEK
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCC
WTTEELLNYLHSGQALIKVAGVRSFYHEVESCEENMTLFIDGESYVFPLKMKNDVITLCE
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCEEEEEC
ANEVTLNNIEQLLLDPHSVANLLQLVNIGYFYAE
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
PDLRAFLLEKIMYQLSFSLQEFLSEYWQKKPVIIKDGFENFQDPVTPEELAGLTLENDV
CHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHCCCCCCHHHHCCCCCCCCH
DSRFISNANNEWKAEHGPLSEELYETLGETNWSIIVQAANHWHKGAAELFKPFKQMPNWL
HHHHHHCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEHHHHCCCHHHHHHHHHHHHHHH
FDDIMISYSVPHGGVGPHIDQYDVFIIQGQGKRHWRVGDIGEYQEEHRHSALKQITGFEP
HHHHHEEEECCCCCCCCCCCCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHH
IIDQILEPGDILYIPPGFPHDGYALEPSMSYSAGFRSPKEQELISNFADFIIENEKGDVH
HHHHHCCCCCEEEECCCCCCCCEEECCCCCCCCCCCCCHHHHHHHHHHHHHEECCCCCEE
YHNPELSTQSHGSEITTRSFEDLKAMMLSAMSDEQTLKQFMGEYLSNSRHHLNIIPDSEK
ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCEEEECCCCCC
WTTEELLNYLHSGQALIKVAGVRSFYHEVESCEENMTLFIDGESYVFPLKMKNDVITLCE
CCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCCEEEEEEECCCEEEEEC
ANEVTLNNIEQLLLDPHSVANLLQLVNIGYFYAE
CCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503; 1729240 [H]