Click here to switch to the map view.

The map label for this gene is ybaO [H]

Identifier: 59712185

GI number: 59712185

Start: 1766014

End: 1766481

Strand: Reverse

Name: ybaO [H]

Synonym: VF_1578

Alternate gene names: 59712185

Gene position: 1766481-1766014 (Counterclockwise)

Preceding gene: 59712188

Following gene: 59712183

Centisome position: 60.96

GC content: 36.75

Gene sequence:

>468_bases
ATGGGGAAGCATGAGCTAGATAAGGTAGATACAACTTTACTTTCATTATTGCAAAAGGATTGCACGGTCTCATTACAAGA
GTTAGCTGATGCCGTTAATTTGACCACAACACCGTGTTGGAAACGATTAAAGAGACTTGAAGAAGAAGGCATTCTTGAAA
AGAAAGTAGCGTTACTTAATCCTGAAAAGTTAGGCTTGAGCTTTAATGCGTTTGTTTTGATTAAAACGTCGAATCATTCA
CAAGAATGGTATAACCGATTTGTTGATACGGTGTCAGATTTTCCTGAAGTTATGGAATTTTATCGAATGGCAGGAGAGTA
CGACTATATGATGAAAGTTCTTGCGGAAGACATGAAAGCTTTTGATGGGTTTTATAAGAAGTTGGTTAATAGTATTGATG
GCATATCAAATGTAACCAGCACATTTGCTATGGAGCCGTTGAAATACACGACTGAATTACCGTTATAA

Upstream 100 bases:

>100_bases
TGACTATGTGAATAATTTACCGCTGTTCGATGAGAAAAACTTTGCTATATTTACTTCATATTGGTAATAAAATAGAAAAA
TTTTCTACAGTGAGGTTTTT

Downstream 100 bases:

>100_bases
TCTGATATTCAAATAAGCAGGTCAGGCAACGATAGCCTGACCAATAGAAAAGATGCGAATGCCTATTTTTTCTTCATTCT
CATCACGCCTTCTTGCATAG

Product: DNA-binding transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 154

Protein sequence:

>155_residues
MGKHELDKVDTTLLSLLQKDCTVSLQELADAVNLTTTPCWKRLKRLEEEGILEKKVALLNPEKLGLSFNAFVLIKTSNHS
QEWYNRFVDTVSDFPEVMEFYRMAGEYDYMMKVLAEDMKAFDGFYKKLVNSIDGISNVTSTFAMEPLKYTTELPL

Sequences:

>Translated_155_residues
MGKHELDKVDTTLLSLLQKDCTVSLQELADAVNLTTTPCWKRLKRLEEEGILEKKVALLNPEKLGLSFNAFVLIKTSNHS
QEWYNRFVDTVSDFPEVMEFYRMAGEYDYMMKVLAEDMKAFDGFYKKLVNSIDGISNVTSTFAMEPLKYTTELPL
>Mature_154_residues
GKHELDKVDTTLLSLLQKDCTVSLQELADAVNLTTTPCWKRLKRLEEEGILEKKVALLNPEKLGLSFNAFVLIKTSNHSQ
EWYNRFVDTVSDFPEVMEFYRMAGEYDYMMKVLAEDMKAFDGFYKKLVNSIDGISNVTSTFAMEPLKYTTELPL

Specific function: Unknown

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=68.6666666666667, Blast_Score=225, Evalue=1e-60,
Organism=Escherichia coli, GI1787116, Length=149, Percent_Identity=31.5436241610738, Blast_Score=95, Evalue=3e-21,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17820; Mature: 17689

Theoretical pI: Translated: 4.73; Mature: 4.73

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGKHELDKVDTTLLSLLQKDCTVSLQELADAVNLTTTPCWKRLKRLEEEGILEKKVALLN
CCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHCC
PEKLGLSFNAFVLIKTSNHSQEWYNRFVDTVSDFPEVMEFYRMAGEYDYMMKVLAEDMKA
HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FDGFYKKLVNSIDGISNVTSTFAMEPLKYTTELPL
HHHHHHHHHHHHCCHHHHHHHHHHCHHHHHCCCCC
>Mature Secondary Structure 
GKHELDKVDTTLLSLLQKDCTVSLQELADAVNLTTTPCWKRLKRLEEEGILEKKVALLN
CCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCHHHHHHHHHHHHCHHHHHHHHCC
PEKLGLSFNAFVLIKTSNHSQEWYNRFVDTVSDFPEVMEFYRMAGEYDYMMKVLAEDMKA
HHHHCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHH
FDGFYKKLVNSIDGISNVTSTFAMEPLKYTTELPL
HHHHHHHHHHHHCCHHHHHHHHHHCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]