| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is maeA [H]
Identifier: 59712165
GI number: 59712165
Start: 1743452
End: 1745140
Strand: Direct
Name: maeA [H]
Synonym: VF_1558
Alternate gene names: 59712165
Gene position: 1743452-1745140 (Clockwise)
Preceding gene: 59712161
Following gene: 59712166
Centisome position: 60.17
GC content: 40.85
Gene sequence:
>1689_bases ATGAATAACAACAAACGTCCCCTATATATCCCTTATGCAGGTCCTGCACTTCTAAGTACTCCTCTACTCAATAAAGGTAG CGCATTCAGTACTACAGAGCGTAAATATTTTAACTTAGAAGGTTTGCTTCCTGAGGCGATTGAGAGTATCGAAGAACAAA CAGGTCGTGCTTACAAGCAATATCAAAATTTTGAAAATGATATGGATAAGCATATTTACCTACGTAATATTCAAGATACA AACGAGACTCTTTTCTACCGTTTAGTACAAAACCACATTAGTGAAATGATGCCAATCATTTATACACCAACGGTAGGTGC AGCTTGTGAGAACTTCTCAAATATATACCGACGTGGCCGTGGTTTGTTTATCTCTTATGAAAACAAAAACCGCATTGATG ATTTATTGAATAATGCCGCTAACCAAAACGTTAAAGTAATTGTAGTTACTGATGGTGAACGAATTCTTGGTCTTGGTGAT CAGGGGATCGGCGGTATGGGTATTCCTATCGGGAAACTGGCATTATATACCGCATGTGGTGGTATCAGCCCTGCTCATAC ATTACCTATCGTACTTGATGTAGGTACAAATAACCCTCAACGTCTTGCTGATCCTATGTATATGGGCTGGCGTCACCCTC GTGTTACTGGCGACGAATACGCTGATTTTGTTGAAGATTTCATTCAAGCTGTACAACGTCGTTGGCCTGAAGCCCTAGTT CAATTTGAAGATTTTGCACAAAAAAATGCAATGCCTTTACTTGAGCGTTACAAAAACCGAATTTGTTGTTTTAATGATGA TATTCAAGGTACTGCAGCAGTTACTGTTGGTTCATTACTTGCCGCTTGTAAAGCTGCTGGCAGTTCTTTATCAGAACAAC GAGTTACTTTCCTAGGCGCAGGCTCTGCTGGTTGTGGTATTGCTGAGGCAATCATTGCACAGATGGTATCAGAAGGAATT TCTGATGCACAAGCTCGCTCACAAGTATATATGGTTGACCGTTGGGGTCTATTACAAGAAGGTATGCCGAATCTATTAGA TTTCCAACAGCGTCTTGTACAAAAAGCTGAAAACACAAAAGATTGGGTTTCTGAGGAACCTAACTTCTCACTTGTTGATG TTATGCGTAATGCAAAACCAACCGTATTAATTGGTGTATCTGGTGCTCCTGGCTTATTTAGTAAAGAAGTAATCCAAGAG ATGCACAAGCATTGTGAACGACCAATTGTTTTCCCTCTATCAAACCCAACAAGCCGTGTAGAGGCTACACCAAACGATAT TATTCGTTGGACTGATGGTCAGGCACTAGTAGCAACAGGAAGCCCGTTTGATCCTGTTGCACACAATGGCCAAACTTATC CAATTGCTCAGTGTAATAATAGCTTTATCTTCCCAGGTATTGGCTTAGGTGTATTAGCTATTAAAGCAACTCGTGTAACG GATGAAATGCTGATGGAATCAAGTCGAGCACTAGCTGAATGCTCTCCACTGGCTATTCACGGTACTGGTGCATTACTTCC ACCACTGGAAGAAATTCACAGCGTATCAAAACGAATCGCATTTGCTGTAGCTAAAAAAGCAATTGAACAAGGCCATGCGC TTGAAATCACAGATGAAGCGCTTCAGCAAAAAATTGAAAGCTACTTTTGGAAACCGGTATACCGTCGTTACAAACGAACA GCATTCTAA
Upstream 100 bases:
>100_bases AACATGACTCTATTCGCACTTTATTTTCAATCACGCTTTGATATTTGCTTAAAGTAGGCATAGGATCTGTGGTTCATTCT CGATTTGAAGAAGCCTAACG
Downstream 100 bases:
>100_bases TAAGTACATGATTTAACTATAAACCAGAGTAACTATTGCTCTGGTTTTTTTTCAACTTTTGCTAAGCCTGGCCGATATAT TTAATATGAATAAATAATCT
Product: malate dehydrogenase
Products: NA
Alternate protein names: NAD-ME [H]
Number of amino acids: Translated: 562; Mature: 562
Protein sequence:
>562_residues MNNNKRPLYIPYAGPALLSTPLLNKGSAFSTTERKYFNLEGLLPEAIESIEEQTGRAYKQYQNFENDMDKHIYLRNIQDT NETLFYRLVQNHISEMMPIIYTPTVGAACENFSNIYRRGRGLFISYENKNRIDDLLNNAANQNVKVIVVTDGERILGLGD QGIGGMGIPIGKLALYTACGGISPAHTLPIVLDVGTNNPQRLADPMYMGWRHPRVTGDEYADFVEDFIQAVQRRWPEALV QFEDFAQKNAMPLLERYKNRICCFNDDIQGTAAVTVGSLLAACKAAGSSLSEQRVTFLGAGSAGCGIAEAIIAQMVSEGI SDAQARSQVYMVDRWGLLQEGMPNLLDFQQRLVQKAENTKDWVSEEPNFSLVDVMRNAKPTVLIGVSGAPGLFSKEVIQE MHKHCERPIVFPLSNPTSRVEATPNDIIRWTDGQALVATGSPFDPVAHNGQTYPIAQCNNSFIFPGIGLGVLAIKATRVT DEMLMESSRALAECSPLAIHGTGALLPPLEEIHSVSKRIAFAVAKKAIEQGHALEITDEALQQKIESYFWKPVYRRYKRT AF
Sequences:
>Translated_562_residues MNNNKRPLYIPYAGPALLSTPLLNKGSAFSTTERKYFNLEGLLPEAIESIEEQTGRAYKQYQNFENDMDKHIYLRNIQDT NETLFYRLVQNHISEMMPIIYTPTVGAACENFSNIYRRGRGLFISYENKNRIDDLLNNAANQNVKVIVVTDGERILGLGD QGIGGMGIPIGKLALYTACGGISPAHTLPIVLDVGTNNPQRLADPMYMGWRHPRVTGDEYADFVEDFIQAVQRRWPEALV QFEDFAQKNAMPLLERYKNRICCFNDDIQGTAAVTVGSLLAACKAAGSSLSEQRVTFLGAGSAGCGIAEAIIAQMVSEGI SDAQARSQVYMVDRWGLLQEGMPNLLDFQQRLVQKAENTKDWVSEEPNFSLVDVMRNAKPTVLIGVSGAPGLFSKEVIQE MHKHCERPIVFPLSNPTSRVEATPNDIIRWTDGQALVATGSPFDPVAHNGQTYPIAQCNNSFIFPGIGLGVLAIKATRVT DEMLMESSRALAECSPLAIHGTGALLPPLEEIHSVSKRIAFAVAKKAIEQGHALEITDEALQQKIESYFWKPVYRRYKRT AF >Mature_562_residues MNNNKRPLYIPYAGPALLSTPLLNKGSAFSTTERKYFNLEGLLPEAIESIEEQTGRAYKQYQNFENDMDKHIYLRNIQDT NETLFYRLVQNHISEMMPIIYTPTVGAACENFSNIYRRGRGLFISYENKNRIDDLLNNAANQNVKVIVVTDGERILGLGD QGIGGMGIPIGKLALYTACGGISPAHTLPIVLDVGTNNPQRLADPMYMGWRHPRVTGDEYADFVEDFIQAVQRRWPEALV QFEDFAQKNAMPLLERYKNRICCFNDDIQGTAAVTVGSLLAACKAAGSSLSEQRVTFLGAGSAGCGIAEAIIAQMVSEGI SDAQARSQVYMVDRWGLLQEGMPNLLDFQQRLVQKAENTKDWVSEEPNFSLVDVMRNAKPTVLIGVSGAPGLFSKEVIQE MHKHCERPIVFPLSNPTSRVEATPNDIIRWTDGQALVATGSPFDPVAHNGQTYPIAQCNNSFIFPGIGLGVLAIKATRVT DEMLMESSRALAECSPLAIHGTGALLPPLEEIHSVSKRIAFAVAKKAIEQGHALEITDEALQQKIESYFWKPVYRRYKRT AF
Specific function: Unknown
COG id: COG0281
COG function: function code C; Malic enzyme
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the malic enzymes family [H]
Homologues:
Organism=Homo sapiens, GI4505143, Length=522, Percent_Identity=43.6781609195402, Blast_Score=452, Evalue=1e-127, Organism=Homo sapiens, GI62420882, Length=549, Percent_Identity=41.1657559198543, Blast_Score=438, Evalue=1e-123, Organism=Homo sapiens, GI62420880, Length=549, Percent_Identity=41.1657559198543, Blast_Score=438, Evalue=1e-123, Organism=Homo sapiens, GI239049447, Length=549, Percent_Identity=41.1657559198543, Blast_Score=438, Evalue=1e-123, Organism=Homo sapiens, GI4505145, Length=524, Percent_Identity=41.9847328244275, Blast_Score=417, Evalue=1e-116, Organism=Homo sapiens, GI270265879, Length=465, Percent_Identity=43.6559139784946, Blast_Score=389, Evalue=1e-108, Organism=Escherichia coli, GI87081919, Length=558, Percent_Identity=68.9964157706093, Blast_Score=802, Evalue=0.0, Organism=Escherichia coli, GI1788806, Length=356, Percent_Identity=24.1573033707865, Blast_Score=73, Evalue=6e-14, Organism=Caenorhabditis elegans, GI17537199, Length=516, Percent_Identity=43.4108527131783, Blast_Score=417, Evalue=1e-117, Organism=Saccharomyces cerevisiae, GI6322823, Length=559, Percent_Identity=43.2915921288014, Blast_Score=452, Evalue=1e-128, Organism=Drosophila melanogaster, GI21356279, Length=519, Percent_Identity=43.1599229287091, Blast_Score=434, Evalue=1e-122, Organism=Drosophila melanogaster, GI281362674, Length=519, Percent_Identity=43.1599229287091, Blast_Score=434, Evalue=1e-122, Organism=Drosophila melanogaster, GI281362672, Length=519, Percent_Identity=43.1599229287091, Blast_Score=434, Evalue=1e-121, Organism=Drosophila melanogaster, GI24646388, Length=513, Percent_Identity=41.3255360623782, Blast_Score=416, Evalue=1e-116, Organism=Drosophila melanogaster, GI24646386, Length=513, Percent_Identity=41.3255360623782, Blast_Score=416, Evalue=1e-116, Organism=Drosophila melanogaster, GI78707242, Length=534, Percent_Identity=37.8277153558052, Blast_Score=382, Evalue=1e-106, Organism=Drosophila melanogaster, GI78707238, Length=534, Percent_Identity=37.8277153558052, Blast_Score=382, Evalue=1e-106, Organism=Drosophila melanogaster, GI78707232, Length=509, Percent_Identity=37.9174852652259, Blast_Score=382, Evalue=1e-106, Organism=Drosophila melanogaster, GI78707240, Length=529, Percent_Identity=37.8071833648393, Blast_Score=380, Evalue=1e-105, Organism=Drosophila melanogaster, GI281363505, Length=508, Percent_Identity=37.7952755905512, Blast_Score=380, Evalue=1e-105, Organism=Drosophila melanogaster, GI78707236, Length=508, Percent_Identity=37.7952755905512, Blast_Score=380, Evalue=1e-105, Organism=Drosophila melanogaster, GI281363503, Length=506, Percent_Identity=37.5494071146245, Blast_Score=376, Evalue=1e-104, Organism=Drosophila melanogaster, GI19922384, Length=544, Percent_Identity=29.0441176470588, Blast_Score=256, Evalue=4e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR015884 - InterPro: IPR012301 - InterPro: IPR012302 - InterPro: IPR001891 - InterPro: IPR016040 [H]
Pfam domain/function: PF00390 malic; PF03949 Malic_M [H]
EC number: =1.1.1.38 [H]
Molecular weight: Translated: 62300; Mature: 62300
Theoretical pI: Translated: 6.04; Mature: 6.04
Prosite motif: PS00331 MALIC_ENZYMES
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 4.3 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 2.7 %Met (Mature Protein) 4.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNNNKRPLYIPYAGPALLSTPLLNKGSAFSTTERKYFNLEGLLPEAIESIEEQTGRAYKQ CCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCHHEECCCCCCHHHHHHHHHHHHHHHHH YQNFENDMDKHIYLRNIQDTNETLFYRLVQNHISEMMPIIYTPTVGAACENFSNIYRRGR HHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCC GLFISYENKNRIDDLLNNAANQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACG CEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHC GISPAHTLPIVLDVGTNNPQRLADPMYMGWRHPRVTGDEYADFVEDFIQAVQRRWPEALV CCCCCCCEEEEEECCCCCHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QFEDFAQKNAMPLLERYKNRICCFNDDIQGTAAVTVGSLLAACKAAGSSLSEQRVTFLGA HHHHHHHHCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC GSAGCGIAEAIIAQMVSEGISDAQARSQVYMVDRWGLLQEGMPNLLDFQQRLVQKAENTK CCCCCHHHHHHHHHHHHHCCCHHHHHCEEEEEECCCHHHHCCCHHHHHHHHHHHHHCCCH DWVSEEPNFSLVDVMRNAKPTVLIGVSGAPGLFSKEVIQEMHKHCERPIVFPLSNPTSRV HHHCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC EATPNDIIRWTDGQALVATGSPFDPVAHNGQTYPIAQCNNSFIFPGIGLGVLAIKATRVT CCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCEEEECCCCEECCCCCHHHHEEEHHHHH DEMLMESSRALAECSPLAIHGTGALLPPLEEIHSVSKRIAFAVAKKAIEQGHALEITDEA HHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHH LQQKIESYFWKPVYRRYKRTAF HHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MNNNKRPLYIPYAGPALLSTPLLNKGSAFSTTERKYFNLEGLLPEAIESIEEQTGRAYKQ CCCCCCEEEEECCCHHHHHCCCCCCCCCCCCCCHHEECCCCCCHHHHHHHHHHHHHHHHH YQNFENDMDKHIYLRNIQDTNETLFYRLVQNHISEMMPIIYTPTVGAACENFSNIYRRGR HHHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHCCEEECCCHHHHHHHHHHHHHCCC GLFISYENKNRIDDLLNNAANQNVKVIVVTDGERILGLGDQGIGGMGIPIGKLALYTACG CEEEEECCCCHHHHHHHHHCCCCEEEEEEECCCEEEECCCCCCCCCCCCHHHHHHHHHHC GISPAHTLPIVLDVGTNNPQRLADPMYMGWRHPRVTGDEYADFVEDFIQAVQRRWPEALV CCCCCCCEEEEEECCCCCHHHHCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH QFEDFAQKNAMPLLERYKNRICCFNDDIQGTAAVTVGSLLAACKAAGSSLSEQRVTFLGA HHHHHHHHCCCHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEC GSAGCGIAEAIIAQMVSEGISDAQARSQVYMVDRWGLLQEGMPNLLDFQQRLVQKAENTK CCCCCHHHHHHHHHHHHHCCCHHHHHCEEEEEECCCHHHHCCCHHHHHHHHHHHHHCCCH DWVSEEPNFSLVDVMRNAKPTVLIGVSGAPGLFSKEVIQEMHKHCERPIVFPLSNPTSRV HHHCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCC EATPNDIIRWTDGQALVATGSPFDPVAHNGQTYPIAQCNNSFIFPGIGLGVLAIKATRVT CCCCCCCEEECCCCEEEECCCCCCCCCCCCCCCEEEECCCCEECCCCCHHHHEEEHHHHH DEMLMESSRALAECSPLAIHGTGALLPPLEEIHSVSKRIAFAVAKKAIEQGHALEITDEA HHHHHHHHHHHHHCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEECHHH LQQKIESYFWKPVYRRYKRTAF HHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA