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The map label for this gene is ydjN [H]

Identifier: 59712120

GI number: 59712120

Start: 1687602

End: 1688972

Strand: Direct

Name: ydjN [H]

Synonym: VF_1513

Alternate gene names: 59712120

Gene position: 1687602-1688972 (Clockwise)

Preceding gene: 59712117

Following gene: 59712123

Centisome position: 58.24

GC content: 40.63

Gene sequence:

>1371_bases
ATGTCATTAGCCGTTATCATCAATTTAGCCGTATTTATCGGTCTTATCTTTTTTATTAATACACAGCAACGTAAAGAATA
CACATTATCAAGACTGGTTCTGATCGGACTTGTTGCTGGTAGCTTATATGGCTTAGGACTTCACCTAGTATACGGTGGAG
GCAGCGACGTAATTAGCACAACACTTGATTGGGTCAATATTGTAGGCAGTGGTTACGTTGGTCTACTTAAGATGGTAATA
ATGCCTCTAGTACTTGTATCTATGTTTGCTGCAGTGGTGAAACTTGATAAATCAGGCTCTTTAGGAAAAATCAGTGGTGT
TACTATCAGCGTATTACTTGTTACGACCATGATTGCAGCTCTTATTGGTATCACTGTTACTCATACTTTCGGCTTAACAG
CTGAGGGGCTAACTGAAGGTGCTCGTGAAACAGCCCGTGTTGCTGTACTTGAATCTCGTATTGGTAGCGTAAGTGATTTA
AGTATTCCTCAAATGCTAGTTAGCTTTATCCCAACCAATCCATTTGCTGATTTAACAGGAACTCGCTCAACATCTATCAT
TGCAGTTGTTATTTTTGCCATTCTATCTGGTATTGCTGCTCGTAAAGTAAGCCAAGAAAAGGAAGAGTTAGCTGCTCCTA
TTAATACTTTTGTTGACGTTGCACAATCAATCGTGATGCGATTAGTTAAAATGATTATGGCTCTAACTCCTTACGGTATT
TTAGCGCTATTAACTAAAGTGGTTGCCACATCGAATGCGGCCGACATTTTAAATCTACTTGGTTTCATCGTAGCTTCATA
TATCGCCATTTTATTAATGTTCGTTGTTCACGGTTTATTGGTATCACTGGTTGGTGTTAGCCCTATCGATTACTTTAAAA
AGATTTGGCCTGTACTCACATTTGCATTCAGCTCTCGTAGCTCAGCAGCAACGATTCCACTAAATGTTGAAGCACAAATT
ACAAAATTACGAGTGCCACCAGCAATTGCCAATTTATCAGCAACCTTTGGTGCGACAATTGGACAAAATGGCTGTGCTGG
TATCTACCCTGCAATGCTTGCTGTAATGGTTGCTCCAACAATGGGGATCCCAATTGATGGACACTTCATTTTATCTCTAG
TTGCTATTATCACAGTAAGTTCATTTGGTATTGCTGGTGTTGGTGGCGGAGCAACATTCGCAGCGTTAATCGTATTACCT
GCGATGGGCTTACCCGTAACTATCGCTGCACTGCTTATTTCTATCGAACCATTGATTGATATGGCTCGTACTGCACTAAA
TGTAAGCGGAGCAATGACAGCCGGTACGATTACAAGTCGCGTATTAGGACAGAAAAGTACTGATGAACAGGTAGAAAGCG
CACAAGCTTAA

Upstream 100 bases:

>100_bases
ATTACCCTCCTAACCAACGAATCGTTATTATCCTTACTAAATCAAAGCGCTTTGCGTCTTACCCCTTACAAATGGGCGCA
TTTATGAACAGGAATGCAGT

Downstream 100 bases:

>100_bases
TAAAATATCTTGAAACTAAAAAGGAAGCCAGATTGGCTTCCTTTTTTATTTGAGATTTTAATAACCAACTTTTTTATATT
CACTCTTAAGATAACACTAA

Product: transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 456; Mature: 455

Protein sequence:

>456_residues
MSLAVIINLAVFIGLIFFINTQQRKEYTLSRLVLIGLVAGSLYGLGLHLVYGGGSDVISTTLDWVNIVGSGYVGLLKMVI
MPLVLVSMFAAVVKLDKSGSLGKISGVTISVLLVTTMIAALIGITVTHTFGLTAEGLTEGARETARVAVLESRIGSVSDL
SIPQMLVSFIPTNPFADLTGTRSTSIIAVVIFAILSGIAARKVSQEKEELAAPINTFVDVAQSIVMRLVKMIMALTPYGI
LALLTKVVATSNAADILNLLGFIVASYIAILLMFVVHGLLVSLVGVSPIDYFKKIWPVLTFAFSSRSSAATIPLNVEAQI
TKLRVPPAIANLSATFGATIGQNGCAGIYPAMLAVMVAPTMGIPIDGHFILSLVAIITVSSFGIAGVGGGATFAALIVLP
AMGLPVTIAALLISIEPLIDMARTALNVSGAMTAGTITSRVLGQKSTDEQVESAQA

Sequences:

>Translated_456_residues
MSLAVIINLAVFIGLIFFINTQQRKEYTLSRLVLIGLVAGSLYGLGLHLVYGGGSDVISTTLDWVNIVGSGYVGLLKMVI
MPLVLVSMFAAVVKLDKSGSLGKISGVTISVLLVTTMIAALIGITVTHTFGLTAEGLTEGARETARVAVLESRIGSVSDL
SIPQMLVSFIPTNPFADLTGTRSTSIIAVVIFAILSGIAARKVSQEKEELAAPINTFVDVAQSIVMRLVKMIMALTPYGI
LALLTKVVATSNAADILNLLGFIVASYIAILLMFVVHGLLVSLVGVSPIDYFKKIWPVLTFAFSSRSSAATIPLNVEAQI
TKLRVPPAIANLSATFGATIGQNGCAGIYPAMLAVMVAPTMGIPIDGHFILSLVAIITVSSFGIAGVGGGATFAALIVLP
AMGLPVTIAALLISIEPLIDMARTALNVSGAMTAGTITSRVLGQKSTDEQVESAQA
>Mature_455_residues
SLAVIINLAVFIGLIFFINTQQRKEYTLSRLVLIGLVAGSLYGLGLHLVYGGGSDVISTTLDWVNIVGSGYVGLLKMVIM
PLVLVSMFAAVVKLDKSGSLGKISGVTISVLLVTTMIAALIGITVTHTFGLTAEGLTEGARETARVAVLESRIGSVSDLS
IPQMLVSFIPTNPFADLTGTRSTSIIAVVIFAILSGIAARKVSQEKEELAAPINTFVDVAQSIVMRLVKMIMALTPYGIL
ALLTKVVATSNAADILNLLGFIVASYIAILLMFVVHGLLVSLVGVSPIDYFKKIWPVLTFAFSSRSSAATIPLNVEAQIT
KLRVPPAIANLSATFGATIGQNGCAGIYPAMLAVMVAPTMGIPIDGHFILSLVAIITVSSFGIAGVGGGATFAALIVLPA
MGLPVTIAALLISIEPLIDMARTALNVSGAMTAGTITSRVLGQKSTDEQVESAQA

Specific function: Unknown

COG id: COG1823

COG function: function code R; Predicted Na+/dicarboxylate symporter

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sodium:dicarboxylate (SDF) symporter (TC 2.A.23) family [H]

Homologues:

Organism=Homo sapiens, GI5032093, Length=409, Percent_Identity=29.0953545232274, Blast_Score=95, Evalue=2e-19,
Organism=Homo sapiens, GI223468566, Length=302, Percent_Identity=30.1324503311258, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI223468564, Length=285, Percent_Identity=31.2280701754386, Blast_Score=93, Evalue=6e-19,
Organism=Homo sapiens, GI21314632, Length=432, Percent_Identity=25.2314814814815, Blast_Score=86, Evalue=9e-17,
Organism=Homo sapiens, GI40254478, Length=412, Percent_Identity=23.7864077669903, Blast_Score=84, Evalue=4e-16,
Organism=Homo sapiens, GI194239697, Length=268, Percent_Identity=25.3731343283582, Blast_Score=75, Evalue=1e-13,
Organism=Homo sapiens, GI169790839, Length=278, Percent_Identity=25.8992805755396, Blast_Score=75, Evalue=2e-13,
Organism=Homo sapiens, GI66773030, Length=394, Percent_Identity=23.8578680203046, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI4827012, Length=436, Percent_Identity=23.1651376146789, Blast_Score=65, Evalue=1e-10,
Organism=Escherichia coli, GI1788024, Length=457, Percent_Identity=59.2997811816193, Blast_Score=498, Evalue=1e-142,
Organism=Escherichia coli, GI1790514, Length=413, Percent_Identity=26.1501210653753, Blast_Score=106, Evalue=3e-24,
Organism=Escherichia coli, GI1789947, Length=389, Percent_Identity=23.6503856041131, Blast_Score=86, Evalue=6e-18,
Organism=Escherichia coli, GI1789473, Length=386, Percent_Identity=27.4611398963731, Blast_Score=65, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71983106, Length=418, Percent_Identity=24.1626794258373, Blast_Score=101, Evalue=6e-22,
Organism=Caenorhabditis elegans, GI71983099, Length=418, Percent_Identity=24.1626794258373, Blast_Score=101, Evalue=7e-22,
Organism=Caenorhabditis elegans, GI193206505, Length=458, Percent_Identity=24.4541484716157, Blast_Score=100, Evalue=2e-21,
Organism=Caenorhabditis elegans, GI71996953, Length=460, Percent_Identity=24.3478260869565, Blast_Score=92, Evalue=5e-19,
Organism=Caenorhabditis elegans, GI17541374, Length=441, Percent_Identity=25.3968253968254, Blast_Score=92, Evalue=6e-19,
Organism=Caenorhabditis elegans, GI193206654, Length=433, Percent_Identity=24.4803695150115, Blast_Score=91, Evalue=1e-18,
Organism=Caenorhabditis elegans, GI17537407, Length=398, Percent_Identity=24.6231155778894, Blast_Score=85, Evalue=7e-17,
Organism=Drosophila melanogaster, GI24583025, Length=434, Percent_Identity=22.5806451612903, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI17137668, Length=434, Percent_Identity=22.5806451612903, Blast_Score=84, Evalue=2e-16,
Organism=Drosophila melanogaster, GI24583023, Length=434, Percent_Identity=22.5806451612903, Blast_Score=84, Evalue=2e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001991 [H]

Pfam domain/function: PF00375 SDF [H]

EC number: NA

Molecular weight: Translated: 47417; Mature: 47286

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLAVIINLAVFIGLIFFINTQQRKEYTLSRLVLIGLVAGSLYGLGLHLVYGGGSDVIST
CCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHH
TLDWVNIVGSGYVGLLKMVIMPLVLVSMFAAVVKLDKSGSLGKISGVTISVLLVTTMIAA
HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEECCHHHHHHHHHHHHHH
LIGITVTHTFGLTAEGLTEGARETARVAVLESRIGSVSDLSIPQMLVSFIPTNPFADLTG
HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCC
TRSTSIIAVVIFAILSGIAARKVSQEKEELAAPINTFVDVAQSIVMRLVKMIMALTPYGI
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
LALLTKVVATSNAADILNLLGFIVASYIAILLMFVVHGLLVSLVGVSPIDYFKKIWPVLT
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
FAFSSRSSAATIPLNVEAQITKLRVPPAIANLSATFGATIGQNGCAGIYPAMLAVMVAPT
HHHCCCCCCEEEEECCCEEEEEEECCHHHHHCHHHHCCCCCCCCCCHHHHHHHHHHHHCC
MGIPIDGHFILSLVAIITVSSFGIAGVGGGATFAALIVLPAMGLPVTIAALLISIEPLID
CCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
MARTALNVSGAMTAGTITSRVLGQKSTDEQVESAQA
HHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCC
>Mature Secondary Structure 
SLAVIINLAVFIGLIFFINTQQRKEYTLSRLVLIGLVAGSLYGLGLHLVYGGGSDVIST
CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCEEEEEECCCCHHHHH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HHHHHHCCCCCHHHHHHHHHHHCCCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]