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The map label for this gene is 59712078

Identifier: 59712078

GI number: 59712078

Start: 1629688

End: 1631259

Strand: Reverse

Name: 59712078

Synonym: VF_1471

Alternate gene names: NA

Gene position: 1631259-1629688 (Counterclockwise)

Preceding gene: 59712079

Following gene: 59712075

Centisome position: 56.3

GC content: 40.14

Gene sequence:

>1572_bases
ATGAATGCCACCGCTGACCGCTTACGACTCATTTTAGGTGACCAATTAAATGCCAGCCATTCATGGTTTCAACACACCGA
TCCACAAACGATTTACGTGATTGCAGAAATGCAACAAGAAACCGCCTATGTAAAACACCATGTTCAAAAAGTGTGTGCTT
TTTTTGCTGCGATGACCCAATTTGCAACAGCATTAGAAAGTGCTGGGCATCGAGTGATGCACTTAACCTTGGACGATACA
AAGCCATTTGAAAGAATCGACGATCTATTAAATCACCTTATTGCTGAACACCATATTACCCATTTTGAGTATCAACTCCC
TGACGAATACCGTTTACGTAGCACACTAGAGCGCTATTGCTTGTCATTATCAATATCTTCTCAAGTTTATGAAAGTGAAC
ACTTCTTTCTATCTGAAACACAAATTGAAAAAGAGTTTAAGCCGAACCATCATCATCGCATGGAACCTTTTTACCGTAAG
ATGAGAAAGCGCTTTAATATACTGATGGAAGAGGGAGAACCCGTTGCAGGCAAGTGGAACTTTGATAGTGCAAATCAAAA
CAAATTAAAGCCGAGCGAGTTTGACAGTGTGCCCACGCCTTTATTATTCGCTAACGATGTCACTGATATTCTTAAGCGTC
TAGAACGTCATAATGTGTCGATGATTGGACAAGCGAATAACCAACTGTTGTGGCCTGTAAATCGGCAGCAGGCAAATGAG
TTATTAGTGTTTTTCTGTCGCTATTGCTTACCGTTGTTTGGGAAGTTTCAAGATGCTATGACATGTAAACTTGATGATAT
GCTCACGCAGAAAGAATGGAGCTTGTTTCATAGCCGTTTATCCTTTGCTCTTAATGCAAAAATACTCAGTCCTATGAAAG
TGATTGATGCTGCTATTACGGAATTTAATCAACGCCAAGATGCCATAGATATTGCTCAGATAGAAGGTTTTGTTCGTCAA
ATTCTAGGGTGGAGAGAGTTTGTTCGAGGGATCTACTGGCGCAATATGCCTGATTACCAAAACCTAAATAAACTTGAAGC
GTCACGATCATTACCAAGTTGGTTTTGGACAGGGAAAACAAAAATGAATTGTATGCATCATGCGATACAGCAGTCTCTTG
ATTTCGCCTACGCACACCATATTCAACGTTTGATGACCACGGGTAATTTTTGTCTATTAACGGGTATTAAACCTGACGAA
GTAGATGAGTGGTATTTAGGGATTTATATCGACGCAATCGAGTGGGTTGAAATGCCAAATACTCGTGGCATGAGCCAGTT
TGCAGATGGTGGTATTGTTGCCTCTAAGGCTTACGCTGCCAGTGGTAACTACGTGAATAAAATGAGTGATTATTGCTCCG
ATTGTCACTATAACGTGAAGCAAATAACTGAACCAAAAGCATGCCCACTAAATGCACTATATTGGCACTTTATGCATACA
CATATTGAGCAGTTTAATAACAATCCACGCACCAGAATGGTCTATGCAAATTGGAATAAAAAATCAGAAGAACAGCAGCA
AGTTATCTTAGATAAAGCGAAATTGTTGCTATTGGAAATTGAGGGGCTGTAG

Upstream 100 bases:

>100_bases
GACTGGCCAATGGTTAAATATTGCTCCAAGCGTTGTCGGTCTTCACGACATCAAAGTGAATAACAAATCCACACATGAAG
ATTTAAGATAGAGGATGATT

Downstream 100 bases:

>100_bases
GTTTTTTGATTAAAATTTTTATCAATGTGACTTGTTTTTGCACCGAATTTTGTTTTAAAAAATACTGAGCCTGAAAACCA
TCAGCTAAATGTTCGTAGTT

Product: hypothetical protein

Products: NA

Alternate protein names: Deoxyribodipyrimidine Photolyase-Like Protein; Photolyase; Deoxyribodipyrimidine Photolyase Family Protein; Deoxyribodipyrimidine Photolyase; Photolyase Protein Family Protein; Deoxyribodipyrimidine Photolyase-Like Protein Protein; Photolyase Family Protein; Cryptochrome/Photolyase; DNA Photolyase; Bcct Transporter; Protein Related Deoxyribodipyrimidine Photolyase; Deoxyribodipyrimidine Photo-Lyase; Cryptochrome/Photolyase-Related; Photolyase Related Protein; BCCT Transporter; Alpha-Deoxyribodipyrimidine Photolyase-Related Protein; Deoxyribodipyrimidine Photolyase Related Protein; A Deoxyribodipyrimidine Photolyase-Like Protein; Deoxyribodipyrimidine Photolyase Homolog

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MNATADRLRLILGDQLNASHSWFQHTDPQTIYVIAEMQQETAYVKHHVQKVCAFFAAMTQFATALESAGHRVMHLTLDDT
KPFERIDDLLNHLIAEHHITHFEYQLPDEYRLRSTLERYCLSLSISSQVYESEHFFLSETQIEKEFKPNHHHRMEPFYRK
MRKRFNILMEEGEPVAGKWNFDSANQNKLKPSEFDSVPTPLLFANDVTDILKRLERHNVSMIGQANNQLLWPVNRQQANE
LLVFFCRYCLPLFGKFQDAMTCKLDDMLTQKEWSLFHSRLSFALNAKILSPMKVIDAAITEFNQRQDAIDIAQIEGFVRQ
ILGWREFVRGIYWRNMPDYQNLNKLEASRSLPSWFWTGKTKMNCMHHAIQQSLDFAYAHHIQRLMTTGNFCLLTGIKPDE
VDEWYLGIYIDAIEWVEMPNTRGMSQFADGGIVASKAYAASGNYVNKMSDYCSDCHYNVKQITEPKACPLNALYWHFMHT
HIEQFNNNPRTRMVYANWNKKSEEQQQVILDKAKLLLLEIEGL

Sequences:

>Translated_523_residues
MNATADRLRLILGDQLNASHSWFQHTDPQTIYVIAEMQQETAYVKHHVQKVCAFFAAMTQFATALESAGHRVMHLTLDDT
KPFERIDDLLNHLIAEHHITHFEYQLPDEYRLRSTLERYCLSLSISSQVYESEHFFLSETQIEKEFKPNHHHRMEPFYRK
MRKRFNILMEEGEPVAGKWNFDSANQNKLKPSEFDSVPTPLLFANDVTDILKRLERHNVSMIGQANNQLLWPVNRQQANE
LLVFFCRYCLPLFGKFQDAMTCKLDDMLTQKEWSLFHSRLSFALNAKILSPMKVIDAAITEFNQRQDAIDIAQIEGFVRQ
ILGWREFVRGIYWRNMPDYQNLNKLEASRSLPSWFWTGKTKMNCMHHAIQQSLDFAYAHHIQRLMTTGNFCLLTGIKPDE
VDEWYLGIYIDAIEWVEMPNTRGMSQFADGGIVASKAYAASGNYVNKMSDYCSDCHYNVKQITEPKACPLNALYWHFMHT
HIEQFNNNPRTRMVYANWNKKSEEQQQVILDKAKLLLLEIEGL
>Mature_523_residues
MNATADRLRLILGDQLNASHSWFQHTDPQTIYVIAEMQQETAYVKHHVQKVCAFFAAMTQFATALESAGHRVMHLTLDDT
KPFERIDDLLNHLIAEHHITHFEYQLPDEYRLRSTLERYCLSLSISSQVYESEHFFLSETQIEKEFKPNHHHRMEPFYRK
MRKRFNILMEEGEPVAGKWNFDSANQNKLKPSEFDSVPTPLLFANDVTDILKRLERHNVSMIGQANNQLLWPVNRQQANE
LLVFFCRYCLPLFGKFQDAMTCKLDDMLTQKEWSLFHSRLSFALNAKILSPMKVIDAAITEFNQRQDAIDIAQIEGFVRQ
ILGWREFVRGIYWRNMPDYQNLNKLEASRSLPSWFWTGKTKMNCMHHAIQQSLDFAYAHHIQRLMTTGNFCLLTGIKPDE
VDEWYLGIYIDAIEWVEMPNTRGMSQFADGGIVASKAYAASGNYVNKMSDYCSDCHYNVKQITEPKACPLNALYWHFMHT
HIEQFNNNPRTRMVYANWNKKSEEQQQVILDKAKLLLLEIEGL

Specific function: Unknown

COG id: COG3046

COG function: function code R; Uncharacterized protein related to deoxyribodipyrimidine photolyase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 61240; Mature: 61240

Theoretical pI: Translated: 6.79; Mature: 6.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
5.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNATADRLRLILGDQLNASHSWFQHTDPQTIYVIAEMQQETAYVKHHVQKVCAFFAAMTQ
CCCCHHHHHHHHCCCCCCCCCHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
FATALESAGHRVMHLTLDDTKPFERIDDLLNHLIAEHHITHFEYQLPDEYRLRSTLERYC
HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHH
LSLSISSQVYESEHFFLSETQIEKEFKPNHHHRMEPFYRKMRKRFNILMEEGEPVAGKWN
HHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
FDSANQNKLKPSEFDSVPTPLLFANDVTDILKRLERHNVSMIGQANNQLLWPVNRQQANE
CCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCEEEECCCCCEECCCCHHHHHH
LLVFFCRYCLPLFGKFQDAMTCKLDDMLTQKEWSLFHSRLSFALNAKILSPMKVIDAAIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFNQRQDAIDIAQIEGFVRQILGWREFVRGIYWRNMPDYQNLNKLEASRSLPSWFWTGKT
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEECCCC
KMNCMHHAIQQSLDFAYAHHIQRLMTTGNFCLLTGIKPDEVDEWYLGIYIDAIEWVEMPN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEEHHHHHCCCC
TRGMSQFADGGIVASKAYAASGNYVNKMSDYCSDCHYNVKQITEPKACPLNALYWHFMHT
CCCHHHHCCCCEEEECCEECCCCHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHH
HIEQFNNNPRTRMVYANWNKKSEEQQQVILDKAKLLLLEIEGL
HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEEEECCC
>Mature Secondary Structure
MNATADRLRLILGDQLNASHSWFQHTDPQTIYVIAEMQQETAYVKHHVQKVCAFFAAMTQ
CCCCHHHHHHHHCCCCCCCCCHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH
FATALESAGHRVMHLTLDDTKPFERIDDLLNHLIAEHHITHFEYQLPDEYRLRSTLERYC
HHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHH
LSLSISSQVYESEHFFLSETQIEKEFKPNHHHRMEPFYRKMRKRFNILMEEGEPVAGKWN
HHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCC
FDSANQNKLKPSEFDSVPTPLLFANDVTDILKRLERHNVSMIGQANNQLLWPVNRQQANE
CCCCCCCCCCCCCCCCCCCCEEECCCHHHHHHHHHHCCCEEEECCCCCEECCCCHHHHHH
LLVFFCRYCLPLFGKFQDAMTCKLDDMLTQKEWSLFHSRLSFALNAKILSPMKVIDAAIT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EFNQRQDAIDIAQIEGFVRQILGWREFVRGIYWRNMPDYQNLNKLEASRSLPSWFWTGKT
HHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCCEEECCCC
KMNCMHHAIQQSLDFAYAHHIQRLMTTGNFCLLTGIKPDEVDEWYLGIYIDAIEWVEMPN
HHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCEEEEEEEEHHHHHCCCC
TRGMSQFADGGIVASKAYAASGNYVNKMSDYCSDCHYNVKQITEPKACPLNALYWHFMHT
CCCHHHHCCCCEEEECCEECCCCHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHHH
HIEQFNNNPRTRMVYANWNKKSEEQQQVILDKAKLLLLEIEGL
HHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA