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The map label for this gene is dinF [C]

Identifier: 59712059

GI number: 59712059

Start: 1604946

End: 1606415

Strand: Reverse

Name: dinF [C]

Synonym: VF_1452

Alternate gene names: 59712059

Gene position: 1606415-1604946 (Counterclockwise)

Preceding gene: 59712060

Following gene: 59712057

Centisome position: 55.44

GC content: 40.41

Gene sequence:

>1470_bases
GTGAGTAATCAAACGGCTAAATTTGTTCATGGATCGACCATGAGACATATTTTAGTAATGTCGGGAGCATCTTCTATTGG
TTTAATGGCACTGTTTGTCGTTGACTTATTAGATATGTTTTTTATCAGTTTATTAGGACAAGTTGAGTTAGCCGCTGCCA
TTGGTTTTGCTGGAACGATAATATTCTTTTCAACCTCAGTTTCTATCGGTTCTTCTATTGCTATGGGGGCTTTGGTATCT
AAAGCGCTAGGGGCAAAAGAGAATGAAAAAGCACAACAATTAGCGAGTAGTACACTGGCGATCGCCTTTATTGTGAATAC
CGTTGTAACGATTGTCATGTTTTGCTTTATTCCTGAATTGCTTTCAATGATAGGAGCAAAAGGGTTTGTTGCTGAGCGTG
CTCAAGCGTATCTTTCTATTTTATTACCAAGTACTCCAATTATTGCCATTGCTATGGCTGCGGGTGCAGGCCTTCGTGCT
GTAGGTGATGCTAAACGTTCAATGTTAGCCACGTTATACGGTGGTATTGTGAATGCTATTTTAGACCCAATTTTCATTTT
TGGTTTTGGACTTAATGTTGAAGGAGCGGCGATTGCATCGGTAATCTCTCGAATTACCGTATTGGTTTTCTCTTTATACC
CATTAGTGAAAACGCACAATTTAGTGAAATGGCCTGAATGGTCGATCATAAAAGATCATACGCCTGCCATTATTACTATT
GCGGCTCCGGCTATTATTACGAATACGGCAACACCGATTGGTAATGCGATTGTGACATCAACCCTTGCGCCGTTTGGTGA
AGATTTTGTTGCTGGTTTTGCGGTAATTGGACGATTAATTCCCGTAACGTTTGCGGTTATTTTTGCGTTGTCTGGAGCGG
TTGGTCCAATCATAGGGCAGAACTTTGGTGCACGACGCATTGATAGGGTAAAAGACACGCTGCGTAATTCGCTGTTCTTT
ACTGCGATTTATTGTATTGCGGTGTCACTGATCTTGTTTTTACTGCAAGATTACATCGTTAAAGCCTTTAACTTGGTTGG
TGATGCATCGCTGATTATGATGACATTCTGTAGTTTTGTGGCTATCACCTTTATTTTTAATGGCGCAATGTTTGTAGCAA
ATACGTCATTTAATAATTTGGGTAAACCTTTATATTCAACGGCACTTAATTTAAGTAAAGCAACCATTGGTACTCTGCCT
TTTGTGTACTTTGGTGCGCAGTGGTATGGCGGTTTGGGTGTATTATATGGTCAAGCCGTAGGTAATGTGGTGTTCGGTAT
TATTAGCTTAATTGTGTTAAGAATGCATGTTATCAGTATGGTGAGAGAGCATTGTGAAACCGTATGCACAGAAGATGCAT
TAGCAGACATTAGTGTCACCATGACGCCGTTTTGTAATAATGATGCCGTCATCATGCAAAGTGGTGCAGAAACCGACGAA
GAGTTGGAAGTTTCTGTGGCTTCAAAATAA

Upstream 100 bases:

>100_bases
TATTTTTAGGAAATAACGATTTAATTTTTAGTATTCAACACCATTACGCTATTTTTATCTAAAATGGTAAAGAGTAGAAA
GATAATGGTAGGAGAGATAT

Downstream 100 bases:

>100_bases
AAGAATGGCGGAGTGTAGATACTCCGCCATTTTTATTTAATGCTCTTTATAACGGTTATTTACGTAGTTTTCTGCGCAAG
AAACCAAAGCCTAATAAAGA

Product: sodium-driven multidrug efflux pump

Products: NA

Alternate protein names: ORF 1 [H]

Number of amino acids: Translated: 489; Mature: 488

Protein sequence:

>489_residues
MSNQTAKFVHGSTMRHILVMSGASSIGLMALFVVDLLDMFFISLLGQVELAAAIGFAGTIIFFSTSVSIGSSIAMGALVS
KALGAKENEKAQQLASSTLAIAFIVNTVVTIVMFCFIPELLSMIGAKGFVAERAQAYLSILLPSTPIIAIAMAAGAGLRA
VGDAKRSMLATLYGGIVNAILDPIFIFGFGLNVEGAAIASVISRITVLVFSLYPLVKTHNLVKWPEWSIIKDHTPAIITI
AAPAIITNTATPIGNAIVTSTLAPFGEDFVAGFAVIGRLIPVTFAVIFALSGAVGPIIGQNFGARRIDRVKDTLRNSLFF
TAIYCIAVSLILFLLQDYIVKAFNLVGDASLIMMTFCSFVAITFIFNGAMFVANTSFNNLGKPLYSTALNLSKATIGTLP
FVYFGAQWYGGLGVLYGQAVGNVVFGIISLIVLRMHVISMVREHCETVCTEDALADISVTMTPFCNNDAVIMQSGAETDE
ELEVSVASK

Sequences:

>Translated_489_residues
MSNQTAKFVHGSTMRHILVMSGASSIGLMALFVVDLLDMFFISLLGQVELAAAIGFAGTIIFFSTSVSIGSSIAMGALVS
KALGAKENEKAQQLASSTLAIAFIVNTVVTIVMFCFIPELLSMIGAKGFVAERAQAYLSILLPSTPIIAIAMAAGAGLRA
VGDAKRSMLATLYGGIVNAILDPIFIFGFGLNVEGAAIASVISRITVLVFSLYPLVKTHNLVKWPEWSIIKDHTPAIITI
AAPAIITNTATPIGNAIVTSTLAPFGEDFVAGFAVIGRLIPVTFAVIFALSGAVGPIIGQNFGARRIDRVKDTLRNSLFF
TAIYCIAVSLILFLLQDYIVKAFNLVGDASLIMMTFCSFVAITFIFNGAMFVANTSFNNLGKPLYSTALNLSKATIGTLP
FVYFGAQWYGGLGVLYGQAVGNVVFGIISLIVLRMHVISMVREHCETVCTEDALADISVTMTPFCNNDAVIMQSGAETDE
ELEVSVASK
>Mature_488_residues
SNQTAKFVHGSTMRHILVMSGASSIGLMALFVVDLLDMFFISLLGQVELAAAIGFAGTIIFFSTSVSIGSSIAMGALVSK
ALGAKENEKAQQLASSTLAIAFIVNTVVTIVMFCFIPELLSMIGAKGFVAERAQAYLSILLPSTPIIAIAMAAGAGLRAV
GDAKRSMLATLYGGIVNAILDPIFIFGFGLNVEGAAIASVISRITVLVFSLYPLVKTHNLVKWPEWSIIKDHTPAIITIA
APAIITNTATPIGNAIVTSTLAPFGEDFVAGFAVIGRLIPVTFAVIFALSGAVGPIIGQNFGARRIDRVKDTLRNSLFFT
AIYCIAVSLILFLLQDYIVKAFNLVGDASLIMMTFCSFVAITFIFNGAMFVANTSFNNLGKPLYSTALNLSKATIGTLPF
VYFGAQWYGGLGVLYGQAVGNVVFGIISLIVLRMHVISMVREHCETVCTEDALADISVTMTPFCNNDAVIMQSGAETDEE
LEVSVASK

Specific function: May be a membrane-bound protein, possibly involved in IAA or IAA-Lysine transport [H]

COG id: COG0534

COG function: function code V; Na+-driven multidrug efflux pump

Gene ontology:

Cell location: Integral Membrane Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002528
- InterPro:   IPR015522 [H]

Pfam domain/function: PF01554 MatE [H]

EC number: NA

Molecular weight: Translated: 51829; Mature: 51698

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSNQTAKFVHGSTMRHILVMSGASSIGLMALFVVDLLDMFFISLLGQVELAAAIGFAGTI
CCCCCCHHHCCCHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFFSTSVSIGSSIAMGALVSKALGAKENEKAQQLASSTLAIAFIVNTVVTIVMFCFIPEL
HHEECCHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSMIGAKGFVAERAQAYLSILLPSTPIIAIAMAAGAGLRAVGDAKRSMLATLYGGIVNAI
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LDPIFIFGFGLNVEGAAIASVISRITVLVFSLYPLVKTHNLVKWPEWSIIKDHTPAIITI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEEEE
AAPAIITNTATPIGNAIVTSTLAPFGEDFVAGFAVIGRLIPVTFAVIFALSGAVGPIIGQ
ECCHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
NFGARRIDRVKDTLRNSLFFTAIYCIAVSLILFLLQDYIVKAFNLVGDASLIMMTFCSFV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AITFIFNGAMFVANTSFNNLGKPLYSTALNLSKATIGTLPFVYFGAQWYGGLGVLYGQAV
HHHHHHCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHH
GNVVFGIISLIVLRMHVISMVREHCETVCTEDALADISVTMTPFCNNDAVIMQSGAETDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCC
ELEVSVASK
CEEEEECCC
>Mature Secondary Structure 
SNQTAKFVHGSTMRHILVMSGASSIGLMALFVVDLLDMFFISLLGQVELAAAIGFAGTI
CCCCCHHHCCCHHHHHHEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IFFSTSVSIGSSIAMGALVSKALGAKENEKAQQLASSTLAIAFIVNTVVTIVMFCFIPEL
HHEECCHHHCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LSMIGAKGFVAERAQAYLSILLPSTPIIAIAMAAGAGLRAVGDAKRSMLATLYGGIVNAI
HHHHCCCCHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHH
LDPIFIFGFGLNVEGAAIASVISRITVLVFSLYPLVKTHNLVKWPEWSIIKDHTPAIITI
HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEECCCCCEEEEE
AAPAIITNTATPIGNAIVTSTLAPFGEDFVAGFAVIGRLIPVTFAVIFALSGAVGPIIGQ
ECCHHHCCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCC
NFGARRIDRVKDTLRNSLFFTAIYCIAVSLILFLLQDYIVKAFNLVGDASLIMMTFCSFV
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
AITFIFNGAMFVANTSFNNLGKPLYSTALNLSKATIGTLPFVYFGAQWYGGLGVLYGQAV
HHHHHHCCEEEEEECCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHH
GNVVFGIISLIVLRMHVISMVREHCETVCTEDALADISVTMTPFCNNDAVIMQSGAETDE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCCCCEEEEECCCCCCC
ELEVSVASK
CEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 2377619 [H]