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The map label for this gene is rbsB [H]

Identifier: 59712054

GI number: 59712054

Start: 1597902

End: 1598780

Strand: Direct

Name: rbsB [H]

Synonym: VF_1447

Alternate gene names: 59712054

Gene position: 1597902-1598780 (Clockwise)

Preceding gene: 59712053

Following gene: 59712055

Centisome position: 55.15

GC content: 43.34

Gene sequence:

>879_bases
ATGAAAAAGTTAGCAACCCTAATCTCTGCAGCCCTACTTTCTACCTCTTTCGCATCAACAGCGGCAGCTCAAGATACGAT
GGCAATGGTCGTTTCAACATTGAATAACCCATTTTTTGTGACCATGAAAGAAGGCGCTGAAGCAAAAGCAAAAGACCTAG
GCTACAAACTGATTGTTCTTGATTCTCAAAACGATCCAAGTAAAGAGCTTTCAAACATTGAAGATCTTACGGTTCGTGGC
GTAAAAGCAATTCTTATCAACCCAACCGATTCAGATGCCGTTTCAAATGCGATTCGTATGGCTAACCGCTCTGGTATTCC
TGTATTAACGCTTGACCGTGGTGCGAGCCGTGGTGAAGTAGTTAGCCACATTGCATCAGATAACGTTGCTGGTGGTGAGA
TGGCAGGTAAATTCATCATGGAAAAAGTGGGCGAAAAAGCACGCGTTATCCAACTTGAAGGCATCGCTGGTACCTCTGCT
GCACGTGAACGTGGTGAAGGTTTCATGAAAACAGTAGATAATGGTGATCTGACTCTACTTGGTAGCCAACCTGCTGATTT
TGACCGTACTAAAGGTCTTAACGTTATGGAAAACATGATTGCAGCAAACCCTGATGTTCAAGCGGTATTTGCTCAAAATG
ATGAAATGGCGTTAGGTGCTCTACGTGCAGTTCAAGCATCAGGTAAAGACGTATTAATCGTCGGTTTTGATGGCACAGAA
GATGGTATTGCAGCGGTTAATCGTGGTCTACTTGGCGCAACTATCGCACAGCAACCAGACCTAATTGGTGCACTTGGTGT
AGAAACAGCGGCTAAAGTTCTTAAAGGTGAAAAGGTTGAGAAATTCATTCCTGTTGACCTAAAAGTTATTACAAAGTAA

Upstream 100 bases:

>100_bases
AATACCCCTATAAATTCGTTTGCTGTTAACACAAAAATAGGCACAACCAGACGTACCATGTTTGACTTGTGCCGCCCTAC
ACCCTTATAAGGAATATAGA

Downstream 100 bases:

>100_bases
TCAGCTTATAAAGTAATAAAAGCGGAGCATTGATACGCTCACAACAACCAGTATCAGTGCTCCCTCTTTTCAAACATTAG
AACCCTATAAAACCTATCGT

Product: D-ribose transporter subunit RbsB

Products: ADP; phosphate; ribose [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 292; Mature: 292

Protein sequence:

>292_residues
MKKLATLISAALLSTSFASTAAAQDTMAMVVSTLNNPFFVTMKEGAEAKAKDLGYKLIVLDSQNDPSKELSNIEDLTVRG
VKAILINPTDSDAVSNAIRMANRSGIPVLTLDRGASRGEVVSHIASDNVAGGEMAGKFIMEKVGEKARVIQLEGIAGTSA
ARERGEGFMKTVDNGDLTLLGSQPADFDRTKGLNVMENMIAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTE
DGIAAVNRGLLGATIAQQPDLIGALGVETAAKVLKGEKVEKFIPVDLKVITK

Sequences:

>Translated_292_residues
MKKLATLISAALLSTSFASTAAAQDTMAMVVSTLNNPFFVTMKEGAEAKAKDLGYKLIVLDSQNDPSKELSNIEDLTVRG
VKAILINPTDSDAVSNAIRMANRSGIPVLTLDRGASRGEVVSHIASDNVAGGEMAGKFIMEKVGEKARVIQLEGIAGTSA
ARERGEGFMKTVDNGDLTLLGSQPADFDRTKGLNVMENMIAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTE
DGIAAVNRGLLGATIAQQPDLIGALGVETAAKVLKGEKVEKFIPVDLKVITK
>Mature_292_residues
MKKLATLISAALLSTSFASTAAAQDTMAMVVSTLNNPFFVTMKEGAEAKAKDLGYKLIVLDSQNDPSKELSNIEDLTVRG
VKAILINPTDSDAVSNAIRMANRSGIPVLTLDRGASRGEVVSHIASDNVAGGEMAGKFIMEKVGEKARVIQLEGIAGTSA
ARERGEGFMKTVDNGDLTLLGSQPADFDRTKGLNVMENMIAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTE
DGIAAVNRGLLGATIAQQPDLIGALGVETAAKVLKGEKVEKFIPVDLKVITK

Specific function: Involved in the high-affinity D-ribose membrane transport system and also serves as the primary chemoreceptor for chemotaxis [H]

COG id: COG1879

COG function: function code G; ABC-type sugar transport system, periplasmic component

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the bacterial solute-binding protein 2 family [H]

Homologues:

Organism=Escherichia coli, GI1790192, Length=293, Percent_Identity=68.259385665529, Blast_Score=406, Evalue=1e-114,
Organism=Escherichia coli, GI1790526, Length=302, Percent_Identity=35.4304635761589, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI1790674, Length=230, Percent_Identity=29.1304347826087, Blast_Score=108, Evalue=6e-25,
Organism=Escherichia coli, GI1790194, Length=275, Percent_Identity=25.0909090909091, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789990, Length=238, Percent_Identity=29.4117647058824, Blast_Score=79, Evalue=3e-16,
Organism=Escherichia coli, GI1788473, Length=279, Percent_Identity=26.5232974910394, Blast_Score=72, Evalue=3e-14,
Organism=Escherichia coli, GI1788898, Length=309, Percent_Identity=25.5663430420712, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787948, Length=291, Percent_Identity=24.0549828178694, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: 3940 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 5900 Molecules/Cell In: Stationary-Phase, Rich-Media (Based on E. coli). 1520 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001761 [H]

Pfam domain/function: PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 30573; Mature: 30573

Theoretical pI: Translated: 4.81; Mature: 4.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLATLISAALLSTSFASTAAAQDTMAMVVSTLNNPFFVTMKEGAEAKAKDLGYKLIVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCEEEEEE
DSQNDPSKELSNIEDLTVRGVKAILINPTDSDAVSNAIRMANRSGIPVLTLDRGASRGEV
ECCCCCHHHHHCHHHHEECCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHH
VSHIASDNVAGGEMAGKFIMEKVGEKARVIQLEGIAGTSAARERGEGFMKTVDNGDLTLL
HHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCCEEECCCCCEEEE
GSQPADFDRTKGLNVMENMIAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTE
CCCCCCCCHHCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCC
DGIAAVNRGLLGATIAQQPDLIGALGVETAAKVLKGEKVEKFIPVDLKVITK
HHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHEECCCCEEEECC
>Mature Secondary Structure
MKKLATLISAALLSTSFASTAAAQDTMAMVVSTLNNPFFVTMKEGAEAKAKDLGYKLIVL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHCCEEEEEE
DSQNDPSKELSNIEDLTVRGVKAILINPTDSDAVSNAIRMANRSGIPVLTLDRGASRGEV
ECCCCCHHHHHCHHHHEECCEEEEEECCCCCHHHHHHHHHHCCCCCEEEEECCCCCCHHH
VSHIASDNVAGGEMAGKFIMEKVGEKARVIQLEGIAGTSAARERGEGFMKTVDNGDLTLL
HHHHHCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHCCCCEEECCCCCEEEE
GSQPADFDRTKGLNVMENMIAANPDVQAVFAQNDEMALGALRAVQASGKDVLIVGFDGTE
CCCCCCCCHHCCCHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHCCCCEEEEEECCCCC
DGIAAVNRGLLGATIAQQPDLIGALGVETAAKVLKGEKVEKFIPVDLKVITK
HHHHHHHCCHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHEECCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; ribose [Periplasm]; H2O [C]

Specific reaction: ATP + ribose [Periplasm] + H2O = ADP + phosphate + ribose [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800; 10675023 [H]