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The map label for this gene is rbsD

Identifier: 59712051

GI number: 59712051

Start: 1594841

End: 1595260

Strand: Direct

Name: rbsD

Synonym: VF_1444

Alternate gene names: 59712051

Gene position: 1594841-1595260 (Clockwise)

Preceding gene: 59712049

Following gene: 59712052

Centisome position: 55.04

GC content: 39.05

Gene sequence:

>420_bases
ATGAAAAAAAATACGCTGCTAAATTCTGAATTGTCATACGTTATCGCAACACTTGGTCATACTGATGAGATCACCATTTG
TGATGCTGGCCTTCCTATTCCTGACGCTTCACAACGTATTGACCTTGCTCTAATTCAAGGCATACCAACCTTTATTGACA
CCGTAAAAGCAACACTTACTGAAATGCAAATTGAAGGCGTAATTGTTGCCGAAGAATTTAAAACCGTTAGCCCACAAATG
CACGATGAACTAATGACACTCATTGCAGCCGAAGAAGCGCAATGTAGTAAATCAATCACTGTTTCTTACATTCCTCATGA
GGAATTCAAAATCCATACTCGTGAGAGTAAAGCGATCGTTCGAACTGGTGAATGTACCCCTTATGCCAATGTAATTTTTC
AATCTGGCGTTGTTTTTTAA

Upstream 100 bases:

>100_bases
TTCTTGCTCTAAATTCACCATCGAAACGTTTACGCAAACGTTTCGATGAGCACAAAACAGACAATAAACGCTCATTGCAT
TTTTAACTTAAGGTGTCCTC

Downstream 100 bases:

>100_bases
GTAGGATACGTTATGACTCAAGCTATCTTAGAATTAAACGGCATTGAGAAAGCCTTCCCCGGAGTGAAAGCTCTGGATGG
TGCTTGTCTTAATGTCTATC

Product: D-ribose pyranase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 139; Mature: 139

Protein sequence:

>139_residues
MKKNTLLNSELSYVIATLGHTDEITICDAGLPIPDASQRIDLALIQGIPTFIDTVKATLTEMQIEGVIVAEEFKTVSPQM
HDELMTLIAAEEAQCSKSITVSYIPHEEFKIHTRESKAIVRTGECTPYANVIFQSGVVF

Sequences:

>Translated_139_residues
MKKNTLLNSELSYVIATLGHTDEITICDAGLPIPDASQRIDLALIQGIPTFIDTVKATLTEMQIEGVIVAEEFKTVSPQM
HDELMTLIAAEEAQCSKSITVSYIPHEEFKIHTRESKAIVRTGECTPYANVIFQSGVVF
>Mature_139_residues
MKKNTLLNSELSYVIATLGHTDEITICDAGLPIPDASQRIDLALIQGIPTFIDTVKATLTEMQIEGVIVAEEFKTVSPQM
HDELMTLIAAEEAQCSKSITVSYIPHEEFKIHTRESKAIVRTGECTPYANVIFQSGVVF

Specific function: Catalyzes the interconversion of beta-pyran and beta- furan forms of D-ribose

COG id: COG1869

COG function: function code G; ABC-type ribose transport system, auxiliary component

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbsD / fucU family. RbsD subfamily

Homologues:

Organism=Escherichia coli, GI87082327, Length=139, Percent_Identity=48.9208633093525, Blast_Score=156, Evalue=4e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBSD_VIBF1 (Q5E4V7)

Other databases:

- EMBL:   CP000020
- RefSeq:   YP_204827.1
- HSSP:   P36946
- ProteinModelPortal:   Q5E4V7
- SMR:   Q5E4V7
- STRING:   Q5E4V7
- GeneID:   3278727
- GenomeReviews:   CP000020_GR
- KEGG:   vfi:VF_1444
- NMPDR:   fig|312309.3.peg.1444
- eggNOG:   COG1869
- HOGENOM:   HBG510403
- OMA:   RAVIRTG
- PhylomeDB:   Q5E4V7
- ProtClustDB:   PRK11797
- BioCyc:   VFIS312309:VF1444-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_01661
- InterPro:   IPR023064
- InterPro:   IPR007721

Pfam domain/function: PF05025 RbsD_FucU; SSF102546 RbsD_FucU

EC number: NA

Molecular weight: Translated: 15312; Mature: 15312

Theoretical pI: Translated: 4.50; Mature: 4.50

Prosite motif: NA

Important sites: ACT_SITE 20-20 BINDING 28-28 BINDING 106-106

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKNTLLNSELSYVIATLGHTDEITICDAGLPIPDASQRIDLALIQGIPTFIDTVKATLT
CCCCCCCCCHHHEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHH
EMQIEGVIVAEEFKTVSPQMHDELMTLIAAEEAQCSKSITVSYIPHEEFKIHTRESKAIV
HHHCCEEEEECCCCCCCCHHHHHHHHHHHHCHHHCCCCCEEEECCCCCEEEEECCCCEEE
RTGECTPYANVIFQSGVVF
EECCCCCHHHHHHHCCCCC
>Mature Secondary Structure
MKKNTLLNSELSYVIATLGHTDEITICDAGLPIPDASQRIDLALIQGIPTFIDTVKATLT
CCCCCCCCCHHHEEEEECCCCCEEEEEECCCCCCCCCCCCHHHHHHCCHHHHHHHHHHHH
EMQIEGVIVAEEFKTVSPQMHDELMTLIAAEEAQCSKSITVSYIPHEEFKIHTRESKAIV
HHHCCEEEEECCCCCCCCHHHHHHHHHHHHCHHHCCCCCEEEECCCCCEEEEECCCCEEE
RTGECTPYANVIFQSGVVF
EECCCCCHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA