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The map label for this gene is dap [H]

Identifier: 59711987

GI number: 59711987

Start: 1527983

End: 1529140

Strand: Reverse

Name: dap [H]

Synonym: VF_1380

Alternate gene names: 59711987

Gene position: 1529140-1527983 (Counterclockwise)

Preceding gene: 59711988

Following gene: 59711986

Centisome position: 52.77

GC content: 35.41

Gene sequence:

>1158_bases
ATGAATCGTTATACGCTAAGCTTCATCTCATTACCTTTATTATTATCTTCGGCGTTATCAGCAAAAGACCTTAATATTGG
CCAGTATTTTACCATTCAAGATAATGAAACACCCGGTTGCGGCGTGGGTATTGTTCAATCTGATAAATTAATTGAGCAAC
TTTATGTTGGCCAATCAAATATTCGATATCAAACTCCTATTGATAATAAAACTGTTTTTGATATTGGCTCTGTCAGTAAG
CATATGACAGCTTATATTATTATGGCGTTGGAATCTGAGGGGCTTTTATCTCAAAAACAAACGTTGGCAGACTTTTATAA
AGATGGCCCTGATTGGTTTAATAACGTCACACTTTTTCATTTAATTCATCATCAAAGTGGCATACCTGATTATTTAAATG
ATACAGAGTCCGCTCTTTATTTAATGAAGCGCTTTAAAACTAATGATAAAGAATTGAATACCGCGCTTTGGGGTGGGATG
GTCGATAAATCATACTTGTTTTCAGAAATTGTCGGTTTTAGTAAACAATTAAAATCCCCCACATTTACGCCGGGAACCTC
AATTTCATATAGTAATACAGGGTATGTGTTACTTGCTGATATTATTGAAAAAGTAACCAACAATAAGTTTGAAGATGAAA
TAGCCTCTCGAATTTTCATTCCTTTAAAAATGAGTAACACTCAAGCATCAACGAAAGACAATTTTCTGATTAACTGGAAA
GCGTCCAGTTATTATGTCGATAAATACGGTAATTATGCTCACAGCCACACCATGTTACCAAGTCAAGGCGATGGTGGAAT
ACAAAGTACGGTGCCTGATATGGCAAAATGGATGGAGCATCTAATTAAACCTAAGTATGCGGATGAAGCCCGTGAAAAGT
TACTTGCGTTATCTAAAGGTGAATACCCAGCATTTACAACGTATTGGGGAGCGGTAGAATTTAAAATGGGCGATTCAAAA
TACGTTAATGGCTTGATAGCAAAGAATTTATACGGTGGTGAATTCTATAGCCATTCAGGTTATTCTCTTGATGGAATGGT
GACTGAATTTTGGTTTTCACCAGAACGAGAAGTTGGCTACATTCAAATGTGTAATTATAAATATTTAAAAATGCCACCAC
TGAACAACATTGTTCAGCAATATGGAAAAGGAAATTAA

Upstream 100 bases:

>100_bases
AAAGTGAATTGTAAATCGGAATTCCGACTCAAGTTATAACATTAAGATGTGGTGGGAGTATTCTATAAATTCAATGTTAT
GAGTTTTGTAGAGGACTTCC

Downstream 100 bases:

>100_bases
AGTGAAAAAAAGAACGGTGTCGTCGTTATTAGGAATGAGTGCGTTATCATTTTCTATGTTGAGCTTGCCATGTTCCGCAA
ATATCAGTGCAGTGCCTGTT

Product: penicillin-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 385; Mature: 385

Protein sequence:

>385_residues
MNRYTLSFISLPLLLSSALSAKDLNIGQYFTIQDNETPGCGVGIVQSDKLIEQLYVGQSNIRYQTPIDNKTVFDIGSVSK
HMTAYIIMALESEGLLSQKQTLADFYKDGPDWFNNVTLFHLIHHQSGIPDYLNDTESALYLMKRFKTNDKELNTALWGGM
VDKSYLFSEIVGFSKQLKSPTFTPGTSISYSNTGYVLLADIIEKVTNNKFEDEIASRIFIPLKMSNTQASTKDNFLINWK
ASSYYVDKYGNYAHSHTMLPSQGDGGIQSTVPDMAKWMEHLIKPKYADEAREKLLALSKGEYPAFTTYWGAVEFKMGDSK
YVNGLIAKNLYGGEFYSHSGYSLDGMVTEFWFSPEREVGYIQMCNYKYLKMPPLNNIVQQYGKGN

Sequences:

>Translated_385_residues
MNRYTLSFISLPLLLSSALSAKDLNIGQYFTIQDNETPGCGVGIVQSDKLIEQLYVGQSNIRYQTPIDNKTVFDIGSVSK
HMTAYIIMALESEGLLSQKQTLADFYKDGPDWFNNVTLFHLIHHQSGIPDYLNDTESALYLMKRFKTNDKELNTALWGGM
VDKSYLFSEIVGFSKQLKSPTFTPGTSISYSNTGYVLLADIIEKVTNNKFEDEIASRIFIPLKMSNTQASTKDNFLINWK
ASSYYVDKYGNYAHSHTMLPSQGDGGIQSTVPDMAKWMEHLIKPKYADEAREKLLALSKGEYPAFTTYWGAVEFKMGDSK
YVNGLIAKNLYGGEFYSHSGYSLDGMVTEFWFSPEREVGYIQMCNYKYLKMPPLNNIVQQYGKGN
>Mature_385_residues
MNRYTLSFISLPLLLSSALSAKDLNIGQYFTIQDNETPGCGVGIVQSDKLIEQLYVGQSNIRYQTPIDNKTVFDIGSVSK
HMTAYIIMALESEGLLSQKQTLADFYKDGPDWFNNVTLFHLIHHQSGIPDYLNDTESALYLMKRFKTNDKELNTALWGGM
VDKSYLFSEIVGFSKQLKSPTFTPGTSISYSNTGYVLLADIIEKVTNNKFEDEIASRIFIPLKMSNTQASTKDNFLINWK
ASSYYVDKYGNYAHSHTMLPSQGDGGIQSTVPDMAKWMEHLIKPKYADEAREKLLALSKGEYPAFTTYWGAVEFKMGDSK
YVNGLIAKNLYGGEFYSHSGYSLDGMVTEFWFSPEREVGYIQMCNYKYLKMPPLNNIVQQYGKGN

Specific function: Hydrolyzes N-terminal residues in D-amino acid- containing peptides [H]

COG id: COG1680

COG function: function code V; Beta-lactamase class C and other penicillin binding proteins

Gene ontology:

Cell location: Periplasmic Protein [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase S12 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012338
- InterPro:   IPR001466
- InterPro:   IPR009090
- InterPro:   IPR012856
- InterPro:   IPR012857 [H]

Pfam domain/function: PF00144 Beta-lactamase; PF07930 DAP_B; PF07932 DAP_C [H]

EC number: =3.4.11.19 [H]

Molecular weight: Translated: 43571; Mature: 43571

Theoretical pI: Translated: 6.32; Mature: 6.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRYTLSFISLPLLLSSALSAKDLNIGQYFTIQDNETPGCGVGIVQSDKLIEQLYVGQSN
CCCEEEHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHCCCCC
IRYQTPIDNKTVFDIGSVSKHMTAYIIMALESEGLLSQKQTLADFYKDGPDWFNNVTLFH
CEEECCCCCCEEEECCCHHHHCEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHCEEEEE
LIHHQSGIPDYLNDTESALYLMKRFKTNDKELNTALWGGMVDKSYLFSEIVGFSKQLKSP
EEHHCCCCCHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
TFTPGTSISYSNTGYVLLADIIEKVTNNKFEDEIASRIFIPLKMSNTQASTKDNFLINWK
CCCCCCCEEECCCCCEEHHHHHHHHHCCCHHHHHHHEEEEEEEECCCCCCCCCCEEEEEE
ASSYYVDKYGNYAHSHTMLPSQGDGGIQSTVPDMAKWMEHLIKPKYADEAREKLLALSKG
CCEEEEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
EYPAFTTYWGAVEFKMGDSKYVNGLIAKNLYGGEFYSHSGYSLDGMVTEFWFSPEREVGY
CCCCEEEEEEEEEEEECCHHHHHHHHHHCCCCCCEECCCCCCCCCHHHEEECCCCCCCCE
IQMCNYKYLKMPPLNNIVQQYGKGN
EEECCEEEEECCCHHHHHHHHCCCC
>Mature Secondary Structure
MNRYTLSFISLPLLLSSALSAKDLNIGQYFTIQDNETPGCGVGIVQSDKLIEQLYVGQSN
CCCEEEHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCEEEECHHHHHHHHHCCCCC
IRYQTPIDNKTVFDIGSVSKHMTAYIIMALESEGLLSQKQTLADFYKDGPDWFNNVTLFH
CEEECCCCCCEEEECCCHHHHCEEEEEEEECCCCCHHHHHHHHHHHCCCHHHHHCEEEEE
LIHHQSGIPDYLNDTESALYLMKRFKTNDKELNTALWGGMVDKSYLFSEIVGFSKQLKSP
EEHHCCCCCHHHCCHHHHHHHHHHHCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
TFTPGTSISYSNTGYVLLADIIEKVTNNKFEDEIASRIFIPLKMSNTQASTKDNFLINWK
CCCCCCCEEECCCCCEEHHHHHHHHHCCCHHHHHHHEEEEEEEECCCCCCCCCCEEEEEE
ASSYYVDKYGNYAHSHTMLPSQGDGGIQSTVPDMAKWMEHLIKPKYADEAREKLLALSKG
CCEEEEECCCCCCHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC
EYPAFTTYWGAVEFKMGDSKYVNGLIAKNLYGGEFYSHSGYSLDGMVTEFWFSPEREVGY
CCCCEEEEEEEEEEEECCHHHHHHHHHHCCCCCCEECCCCCCCCCHHHEEECCCCCCCCE
IQMCNYKYLKMPPLNNIVQQYGKGN
EEECCEEEEECCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA