| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is 59711798
Identifier: 59711798
GI number: 59711798
Start: 1323492
End: 1324895
Strand: Direct
Name: 59711798
Synonym: VF_1191
Alternate gene names: NA
Gene position: 1323492-1324895 (Clockwise)
Preceding gene: 59711797
Following gene: 59711799
Centisome position: 45.68
GC content: 40.46
Gene sequence:
>1404_bases ATGAAACCCGCAATGCTTGGAGCAATAACTTTATTATCTACATTTTCTTTTTCTTCTTTCTCAGCTGATGTTAACCCTAT TGATGTTGCCTCTGGTGGTAAGACAAGCGTAAAAAAAGAGGGGCAGAATGCCTTTTCTTTGCCTGCTGCAAATTTACCTA TGAGTAAACGACTAGACTTTAGTGTCGGTAACAGTTTCTTTCGTAATCCTTGGGTACAAGCACCCGCGTCAACAGATGCC AGAGATGGACTCGGCCCTTTATTTAATACTAACGGTTGTCAAAATTGTCATATTAAAGATGGTAGAGGACATGCTCCTCG AGAAGGCGATACAAATGCTGTATCTATGCTTGTTCGATTAAGTATTCCTGCTTTTACTCCAGAGCAGAAAAAACGCATTC TTTTAGAAGGTGTGATCCCTGAGCCTACTTATGGTGGGCAGCTTCAAGATTTCTCGTTACCTGGATTAAAGCCAGAAGGA CAAATACACATTACCTATAATGATCTATCTGTAACGCTTTCTGATGGTTACGTTGTCACATTACGAAAGCCAAATTTGAC CATTACTGAATTAGCTTATGGTGACATGGATGAGAATGTAATGATGTCTGCACGAATTGCCCCACCAATGATCGGTTTAG GTTTATTAGAATCGATCCCTGAAAAAACAATCCTTGGTTTTGCTGAACAACAAAAGAATGAAAATAAAGGCGTTTCAGGT AAAGCAAACCGAGTGTGGGATGCAAAAACAAAGCAACTTGAATTAGGACGTTTTGGTTGGAAAGCTGGACAACCGACACT TATGCAACAAAATGCGGCAGCGTTTAACGGGGATTTAGGCTTAACGAGCAATATGTTCCCGAAAGATGATTGTACTCAGG CTCAGGCAGCATGTGCGAAGCTTCCCCATGGCGGTGAGCCTGAGGTTAGCGATAAGATTTTAAATTTTGTTGAATTTTAT TCTCAGCATTTAGCGGTTCCAGTTCGTCGAAATGTAAATGATCCCGAAGTTATTAAAGGTCAAAAACTATTTAAAGATAT TGGCTGTGAAAGCTGTCATAAAAGCAATATACAAACAGCAAAAATTAAAAACAGACCTGCGTTATCTAACCAGTTAATTC ACCCTTATACTGATTTATTACTTCATGATATGGGGGAAGGGCTTGCAGATAATAGACCGGAGTTTTTAGCGAATGGGCAA GAATGGCGAACGCCGCCATTGTGGGGACTTGGCTATACACAGGAAGTGAATGGACATACAGAAATGCTGCATGATGGTCG AGCTAGAAATGCATTAGAAGCGATTCTTTGGCATGGTGGTGAAGCCCAAACAGCTCGTGATGCCGTAGTTAAATTATCAA CGCAAGATCGCAATGCGTTACTTGAATTTTTGAACTCATTATAA
Upstream 100 bases:
>100_bases TTGAGCTCTTTTCTTTTTTCTATTGTGGTTATTGAAATAATAACGATAAACAATACCCATCGATACCCATAATAATATGA CGATCAGGATGTGCGACTTT
Downstream 100 bases:
>100_bases AGGATAAGCAATGAAACCTAAGTATCTATTACTAAGCAGTACGGTTTTGCTTGCTGCCTGTCAAAGTACTAGCCAAACCT CGACATCAAATGAAATGATT
Product: thiol oxidoreductase
Products: NA
Alternate protein names: Lipoprotein; Thiol Oxidoreductase-Like; Thiol Oxidoreductase-Like Protein; Exported Protein; Signal Peptide
Number of amino acids: Translated: 467; Mature: 467
Protein sequence:
>467_residues MKPAMLGAITLLSTFSFSSFSADVNPIDVASGGKTSVKKEGQNAFSLPAANLPMSKRLDFSVGNSFFRNPWVQAPASTDA RDGLGPLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPAFTPEQKKRILLEGVIPEPTYGGQLQDFSLPGLKPEG QIHITYNDLSVTLSDGYVVTLRKPNLTITELAYGDMDENVMMSARIAPPMIGLGLLESIPEKTILGFAEQQKNENKGVSG KANRVWDAKTKQLELGRFGWKAGQPTLMQQNAAAFNGDLGLTSNMFPKDDCTQAQAACAKLPHGGEPEVSDKILNFVEFY SQHLAVPVRRNVNDPEVIKGQKLFKDIGCESCHKSNIQTAKIKNRPALSNQLIHPYTDLLLHDMGEGLADNRPEFLANGQ EWRTPPLWGLGYTQEVNGHTEMLHDGRARNALEAILWHGGEAQTARDAVVKLSTQDRNALLEFLNSL
Sequences:
>Translated_467_residues MKPAMLGAITLLSTFSFSSFSADVNPIDVASGGKTSVKKEGQNAFSLPAANLPMSKRLDFSVGNSFFRNPWVQAPASTDA RDGLGPLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPAFTPEQKKRILLEGVIPEPTYGGQLQDFSLPGLKPEG QIHITYNDLSVTLSDGYVVTLRKPNLTITELAYGDMDENVMMSARIAPPMIGLGLLESIPEKTILGFAEQQKNENKGVSG KANRVWDAKTKQLELGRFGWKAGQPTLMQQNAAAFNGDLGLTSNMFPKDDCTQAQAACAKLPHGGEPEVSDKILNFVEFY SQHLAVPVRRNVNDPEVIKGQKLFKDIGCESCHKSNIQTAKIKNRPALSNQLIHPYTDLLLHDMGEGLADNRPEFLANGQ EWRTPPLWGLGYTQEVNGHTEMLHDGRARNALEAILWHGGEAQTARDAVVKLSTQDRNALLEFLNSL >Mature_467_residues MKPAMLGAITLLSTFSFSSFSADVNPIDVASGGKTSVKKEGQNAFSLPAANLPMSKRLDFSVGNSFFRNPWVQAPASTDA RDGLGPLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRLSIPAFTPEQKKRILLEGVIPEPTYGGQLQDFSLPGLKPEG QIHITYNDLSVTLSDGYVVTLRKPNLTITELAYGDMDENVMMSARIAPPMIGLGLLESIPEKTILGFAEQQKNENKGVSG KANRVWDAKTKQLELGRFGWKAGQPTLMQQNAAAFNGDLGLTSNMFPKDDCTQAQAACAKLPHGGEPEVSDKILNFVEFY SQHLAVPVRRNVNDPEVIKGQKLFKDIGCESCHKSNIQTAKIKNRPALSNQLIHPYTDLLLHDMGEGLADNRPEFLANGQ EWRTPPLWGLGYTQEVNGHTEMLHDGRARNALEAILWHGGEAQTARDAVVKLSTQDRNALLEFLNSL
Specific function: Unknown
COG id: COG3488
COG function: function code C; Predicted thiol oxidoreductase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 51060; Mature: 51060
Theoretical pI: Translated: 6.74; Mature: 6.74
Prosite motif: PS51007 CYTC
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 2.6 %Met (Translated Protein) 3.9 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKPAMLGAITLLSTFSFSSFSADVNPIDVASGGKTSVKKEGQNAFSLPAANLPMSKRLDF CCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCHHHCCCH SVGNSFFRNPWVQAPASTDARDGLGPLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRL HHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHEEHHH SIPAFTPEQKKRILLEGVIPEPTYGGQLQDFSLPGLKPEGQIHITYNDLSVTLSDGYVVT CCCCCCHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCEEEE LRKPNLTITELAYGDMDENVMMSARIAPPMIGLGLLESIPEKTILGFAEQQKNENKGVSG EECCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC KANRVWDAKTKQLELGRFGWKAGQPTLMQQNAAAFNGDLGLTSNMFPKDDCTQAQAACAK CCCCEECCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH LPHGGEPEVSDKILNFVEFYSQHLAVPVRRNVNDPEVIKGQKLFKDIGCESCHKSNIQTA CCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCHHHHHHCCCCEE KIKNRPALSNQLIHPYTDLLLHDMGEGLADNRPEFLANGQEWRTPPLWGLGYTQEVNGHT EECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHH EMLHDGRARNALEAILWHGGEAQTARDAVVKLSTQDRNALLEFLNSL HHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHCC >Mature Secondary Structure MKPAMLGAITLLSTFSFSSFSADVNPIDVASGGKTSVKKEGQNAFSLPAANLPMSKRLDF CCCHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCHHHHCCCCCCCCCCCCCCHHHCCCH SVGNSFFRNPWVQAPASTDARDGLGPLFNTNGCQNCHIKDGRGHAPREGDTNAVSMLVRL HHCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHHHHEEHHH SIPAFTPEQKKRILLEGVIPEPTYGGQLQDFSLPGLKPEGQIHITYNDLSVTLSDGYVVT CCCCCCHHHHHEEEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCEEEE LRKPNLTITELAYGDMDENVMMSARIAPPMIGLGLLESIPEKTILGFAEQQKNENKGVSG EECCCCEEEEEECCCCCCCEEEEEECCCCHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCC KANRVWDAKTKQLELGRFGWKAGQPTLMQQNAAAFNGDLGLTSNMFPKDDCTQAQAACAK CCCCEECCCCCEEECCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH LPHGGEPEVSDKILNFVEFYSQHLAVPVRRNVNDPEVIKGQKLFKDIGCESCHKSNIQTA CCCCCCCCHHHHHHHHHHHHHHHCCCHHHCCCCCCHHHHHHHHHHHHCHHHHHHCCCCEE KIKNRPALSNQLIHPYTDLLLHDMGEGLADNRPEFLANGQEWRTPPLWGLGYTQEVNGHT EECCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCCCCCCCCCCHH EMLHDGRARNALEAILWHGGEAQTARDAVVKLSTQDRNALLEFLNSL HHHHCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA