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The map label for this gene is sdaA [H]

Identifier: 59711783

GI number: 59711783

Start: 1305106

End: 1306467

Strand: Reverse

Name: sdaA [H]

Synonym: VF_1176

Alternate gene names: 59711783

Gene position: 1306467-1305106 (Counterclockwise)

Preceding gene: 59711784

Following gene: 59711782

Centisome position: 45.09

GC content: 42.58

Gene sequence:

>1362_bases
ATGATTAGTGTTTTTGATATCTACAAAATCGGAGTTGGTCCTTCTAGCTCCCACACCGTTGGTCCAATGAAAGCAGGTAA
AGAGTTTATTGACGATTTACGAGGCATGGGCAAACTGCGTGATATCACTAAAATCACTGTTGATGTTTACGGTTCATTAT
CACTGACAGGGAAAGGTCACCATACTGATATCGCTATCATTATGGGTCTGGCAGGTAACACGCCAGAACACGTAGATATT
GACTCTATTCCGGGCTTCATCGCTCGCGTTGAAGAAACTGAGCGCTTACCAGTTGGTATGCACTGCCACACGGTAGAATT
TCCAAAAGAAGGTGGAATGAATTTCCATACTTCTAACCTATCACTTCACGAAAATGGCATGCAAATCCATGCGTGGATTG
ACGGTGAAGTGGCTTACTCTAAAACTTACTACTCTATCGGTGGTGGTTTTATTGTTGATGAAGAAAACTTTGGTAAAGAA
GTAGAATCATCAATCCAAGTTCCTTACTCATTCAACTATGCTTCTGAACTTGTTGATTTATGTAAAGAGCACGGCTTATC
TATCAGTACTCTAGTAATGAAAAACGAACACGCGATTCTTGCAGAAGATGAAGTTCGTACTTATTTTGCTAAGATCTGGA
AAACCATGCGTGACTGTATGGAAAAAGGCATGAATACTGAAGGCATCCTTCCTGGACCTCTACGTGTTCCTCGTCGTGCT
GCAGCTCTACGTCAACAATTACTGACTTCTGAAAAAACGTCTCACGACCCTATGGAAGTAGTTGATTGGGTTAACATGTA
CGCATTTGCTGTAAACGAAGAAAATGCGGCTGGTGGTCGTGTTGTTACCGCTCCAACTAATGGCGCATGTGGCATCATCC
CTGCTGTTCTAGCATACTACGATAAGTTTATCCAAACAGTAACTGAGAAAGATTACATCCGTTACTTTGCAGCTTCTGGT
GCAATCGGTGGTCTTTACAAACAAAATGCATCAATCTCTGGTGCAGAAGTTGGTTGTCAGGGTGAAGTTGGTGTTGCTTG
TTCTATGGCTGCTGCAGGTCTTGCTGAGCTTATGGGTGGTAGCCCAGAGCAAGTATGTATGGCTGCAGAAATTGCAATGG
AACATAACTTAGGTTTAACTTGTGACCCTGTTGCTGGCCAAGTACAAGTTCCTTGTATCGAACGTAACGGCATTGCTGCG
GTTAAAGCTATCAACGCAACTCGTATGGCTTTACGTCGTGCATCAGCACCTCGTGTATCTCTTGATAAAGTTATTGAGAC
AATGCTTGAAACAGGTAAAGACATGAATGCTAAATACCGTGAAACTTCTCAGGGTGGCCTAGCAATTAAAGTTATTTGCT
AA

Upstream 100 bases:

>100_bases
TTTAATAACTAATTTGTAAACTAATACAAACTTAGTTAAACGAAGTTAATAATAATGATAATAAAGCCCCCTCTTTTGGG
GGCTTATTCGAGGTAATTAC

Downstream 100 bases:

>100_bases
TAGAGCATGACATTCCATTACTAAGGGACGATTTATCGTCCCTTTTTTTATGCTTTACAAAAAAATACTACAAAATTCAG
CTATCTAAACTACAATTATT

Product: L-serine deaminase I

Products: NA

Alternate protein names: SDH 1; L-serine deaminase 1; L-SD1 [H]

Number of amino acids: Translated: 453; Mature: 453

Protein sequence:

>453_residues
MISVFDIYKIGVGPSSSHTVGPMKAGKEFIDDLRGMGKLRDITKITVDVYGSLSLTGKGHHTDIAIIMGLAGNTPEHVDI
DSIPGFIARVEETERLPVGMHCHTVEFPKEGGMNFHTSNLSLHENGMQIHAWIDGEVAYSKTYYSIGGGFIVDEENFGKE
VESSIQVPYSFNYASELVDLCKEHGLSISTLVMKNEHAILAEDEVRTYFAKIWKTMRDCMEKGMNTEGILPGPLRVPRRA
AALRQQLLTSEKTSHDPMEVVDWVNMYAFAVNEENAAGGRVVTAPTNGACGIIPAVLAYYDKFIQTVTEKDYIRYFAASG
AIGGLYKQNASISGAEVGCQGEVGVACSMAAAGLAELMGGSPEQVCMAAEIAMEHNLGLTCDPVAGQVQVPCIERNGIAA
VKAINATRMALRRASAPRVSLDKVIETMLETGKDMNAKYRETSQGGLAIKVIC

Sequences:

>Translated_453_residues
MISVFDIYKIGVGPSSSHTVGPMKAGKEFIDDLRGMGKLRDITKITVDVYGSLSLTGKGHHTDIAIIMGLAGNTPEHVDI
DSIPGFIARVEETERLPVGMHCHTVEFPKEGGMNFHTSNLSLHENGMQIHAWIDGEVAYSKTYYSIGGGFIVDEENFGKE
VESSIQVPYSFNYASELVDLCKEHGLSISTLVMKNEHAILAEDEVRTYFAKIWKTMRDCMEKGMNTEGILPGPLRVPRRA
AALRQQLLTSEKTSHDPMEVVDWVNMYAFAVNEENAAGGRVVTAPTNGACGIIPAVLAYYDKFIQTVTEKDYIRYFAASG
AIGGLYKQNASISGAEVGCQGEVGVACSMAAAGLAELMGGSPEQVCMAAEIAMEHNLGLTCDPVAGQVQVPCIERNGIAA
VKAINATRMALRRASAPRVSLDKVIETMLETGKDMNAKYRETSQGGLAIKVIC
>Mature_453_residues
MISVFDIYKIGVGPSSSHTVGPMKAGKEFIDDLRGMGKLRDITKITVDVYGSLSLTGKGHHTDIAIIMGLAGNTPEHVDI
DSIPGFIARVEETERLPVGMHCHTVEFPKEGGMNFHTSNLSLHENGMQIHAWIDGEVAYSKTYYSIGGGFIVDEENFGKE
VESSIQVPYSFNYASELVDLCKEHGLSISTLVMKNEHAILAEDEVRTYFAKIWKTMRDCMEKGMNTEGILPGPLRVPRRA
AALRQQLLTSEKTSHDPMEVVDWVNMYAFAVNEENAAGGRVVTAPTNGACGIIPAVLAYYDKFIQTVTEKDYIRYFAASG
AIGGLYKQNASISGAEVGCQGEVGVACSMAAAGLAELMGGSPEQVCMAAEIAMEHNLGLTCDPVAGQVQVPCIERNGIAA
VKAINATRMALRRASAPRVSLDKVIETMLETGKDMNAKYRETSQGGLAIKVIC

Specific function: Deaminates also threonine, particularly when it is present in high concentration [H]

COG id: COG1760

COG function: function code E; L-serine deaminase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron-sulfur dependent L-serine dehydratase family [H]

Homologues:

Organism=Escherichia coli, GI1788116, Length=453, Percent_Identity=73.7306843267108, Blast_Score=708, Evalue=0.0,
Organism=Escherichia coli, GI1789161, Length=452, Percent_Identity=70.353982300885, Blast_Score=666, Evalue=0.0,
Organism=Escherichia coli, GI48994925, Length=453, Percent_Identity=69.0949227373068, Blast_Score=648, Evalue=0.0,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004644
- InterPro:   IPR005130
- InterPro:   IPR005131 [H]

Pfam domain/function: PF03313 SDH_alpha; PF03315 SDH_beta [H]

EC number: =4.3.1.17 [H]

Molecular weight: Translated: 48968; Mature: 48968

Theoretical pI: Translated: 5.45; Mature: 5.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
6.6 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
6.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISVFDIYKIGVGPSSSHTVGPMKAGKEFIDDLRGMGKLRDITKITVDVYGSLSLTGKGH
CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEEEECCCCC
HTDIAIIMGLAGNTPEHVDIDSIPGFIARVEETERLPVGMHCHTVEFPKEGGMNFHTSNL
CCEEEEEEEECCCCCCCCCHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCC
SLHENGMQIHAWIDGEVAYSKTYYSIGGGFIVDEENFGKEVESSIQVPYSFNYASELVDL
EEECCCEEEEEEECCEEEEEEEEEECCCCEEEECHHHCHHHHHCCCCCEECCHHHHHHHH
CKEHGLSISTLVMKNEHAILAEDEVRTYFAKIWKTMRDCMEKGMNTEGILPGPLRVPRRA
HHHCCCEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
AALRQQLLTSEKTSHDPMEVVDWVNMYAFAVNEENAAGGRVVTAPTNGACGIIPAVLAYY
HHHHHHHHHHCCCCCCHHHHHHHHHHEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHH
DKFIQTVTEKDYIRYFAASGAIGGLYKQNASISGAEVGCQGEVGVACSMAAAGLAELMGG
HHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
SPEQVCMAAEIAMEHNLGLTCDPVAGQVQVPCIERNGIAAVKAINATRMALRRASAPRVS
CHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHCCCCCCC
LDKVIETMLETGKDMNAKYRETSQGGLAIKVIC
HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC
>Mature Secondary Structure
MISVFDIYKIGVGPSSSHTVGPMKAGKEFIDDLRGMGKLRDITKITVDVYGSLSLTGKGH
CCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHEEEEEEEEEEEECCCCC
HTDIAIIMGLAGNTPEHVDIDSIPGFIARVEETERLPVGMHCHTVEFPKEGGMNFHTSNL
CCEEEEEEEECCCCCCCCCHHCCCHHHHHHHHHCCCCCCEEEEEEECCCCCCCEEEECCC
SLHENGMQIHAWIDGEVAYSKTYYSIGGGFIVDEENFGKEVESSIQVPYSFNYASELVDL
EEECCCEEEEEEECCEEEEEEEEEECCCCEEEECHHHCHHHHHCCCCCEECCHHHHHHHH
CKEHGLSISTLVMKNEHAILAEDEVRTYFAKIWKTMRDCMEKGMNTEGILPGPLRVPRRA
HHHCCCEEEEEEEECCCEEEEHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHH
AALRQQLLTSEKTSHDPMEVVDWVNMYAFAVNEENAAGGRVVTAPTNGACGIIPAVLAYY
HHHHHHHHHHCCCCCCHHHHHHHHHHEEEEECCCCCCCCEEEECCCCCCCHHHHHHHHHH
DKFIQTVTEKDYIRYFAASGAIGGLYKQNASISGAEVGCQGEVGVACSMAAAGLAELMGG
HHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCC
SPEQVCMAAEIAMEHNLGLTCDPVAGQVQVPCIERNGIAAVKAINATRMALRRASAPRVS
CHHHHHHHHHHHHHCCCCCEECCCCCCEEEEEECCCCCEEEEEHHHHHHHHHHCCCCCCC
LDKVIETMLETGKDMNAKYRETSQGGLAIKVIC
HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 2504697; 8436113; 9097040; 9278503 [H]