Click here to switch to the map view.

The map label for this gene is ycjZ [C]

Identifier: 59711718

GI number: 59711718

Start: 1223822

End: 1224559

Strand: Direct

Name: ycjZ [C]

Synonym: VF_1111

Alternate gene names: 59711718

Gene position: 1223822-1224559 (Clockwise)

Preceding gene: 59711716

Following gene: 59711721

Centisome position: 42.24

GC content: 38.08

Gene sequence:

>738_bases
ATGGAAGAGAAGTTAGGCGTTCGCTTATTAGAGAAAAGAGGACGAGAACTCGTACCAACAGAAACAGGAAAACACTATTA
CCAATTGCTTGAAAGTCAGTTTTCAGACCTAGAAAGTAACTGTCATCAACTTAATGAGCACGTTGATGAAGTGACAGGGA
TGATTCGTTTATCTTTACCATATCGATTTTATCATCATTATGTTCGTGATTTGATCGTGGATTTTTTACTGGAATACCCA
AAGGCGCAAATTGAAGTCAACCTATGTGCAGAAGATACACTACCAGCCACAGATCGAGATTTAGTACTGACTTTTGATAT
TAGCAGAGCCGATGGAATGATAGCTCGTCCTCTGTTTTTAGCAAAGCACGGTGTATTTGTGACCAAATCTTATTGGGAAC
ATAATCAAACAAAGAATATTGAAGAGTTGGATTGGATTCGATTGAATGATCAGAAAAACCTAACTTATACCGATGAAAAG
CAAACTTTAAAGGAAATACATGTCCGCCCTAGATTAGAGGTGAATGATCTTGACCAAGTACTTCATGCAACGGTTAAAGG
GTTAGGGGCTGCTCGATTACCAGTACACCTTGTTACTTCTGATATGGACTTAGTTGAGATCTTTCCTGATTACTCGTTTC
CGCCAAGGCAATCGTATTTAGTATATAAACAACGAAAATATCAACCTAGAGCATTAACGATTCTAGTAGAGCGAATTATT
AGCGTGATGGAACGATAA

Upstream 100 bases:

>100_bases
TTTATTTCTTTTTTGTAAAGTGGCTCAGCTTGGGTCACAACAAAGTGCGGCAAAAGAGCTGAAAGTGCCCGTTTCAACGG
TTTCACGCAGGATTTCATCT

Downstream 100 bases:

>100_bases
AATCCAAGTGCGTTAACACTTGGACTTTATTATTGAAATGTGAAAGCGTTAGTAAACAGTACACCACTCATTTTTCATAT
CGATTAAGTACCAGTTATCA

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: ORF2 [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MEEKLGVRLLEKRGRELVPTETGKHYYQLLESQFSDLESNCHQLNEHVDEVTGMIRLSLPYRFYHHYVRDLIVDFLLEYP
KAQIEVNLCAEDTLPATDRDLVLTFDISRADGMIARPLFLAKHGVFVTKSYWEHNQTKNIEELDWIRLNDQKNLTYTDEK
QTLKEIHVRPRLEVNDLDQVLHATVKGLGAARLPVHLVTSDMDLVEIFPDYSFPPRQSYLVYKQRKYQPRALTILVERII
SVMER

Sequences:

>Translated_245_residues
MEEKLGVRLLEKRGRELVPTETGKHYYQLLESQFSDLESNCHQLNEHVDEVTGMIRLSLPYRFYHHYVRDLIVDFLLEYP
KAQIEVNLCAEDTLPATDRDLVLTFDISRADGMIARPLFLAKHGVFVTKSYWEHNQTKNIEELDWIRLNDQKNLTYTDEK
QTLKEIHVRPRLEVNDLDQVLHATVKGLGAARLPVHLVTSDMDLVEIFPDYSFPPRQSYLVYKQRKYQPRALTILVERII
SVMER
>Mature_245_residues
MEEKLGVRLLEKRGRELVPTETGKHYYQLLESQFSDLESNCHQLNEHVDEVTGMIRLSLPYRFYHHYVRDLIVDFLLEYP
KAQIEVNLCAEDTLPATDRDLVLTFDISRADGMIARPLFLAKHGVFVTKSYWEHNQTKNIEELDWIRLNDQKNLTYTDEK
QTLKEIHVRPRLEVNDLDQVLHATVKGLGAARLPVHLVTSDMDLVEIFPDYSFPPRQSYLVYKQRKYQPRALTILVERII
SVMER

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 28824; Mature: 28824

Theoretical pI: Translated: 6.18; Mature: 6.18

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEEKLGVRLLEKRGRELVPTETGKHYYQLLESQFSDLESNCHQLNEHVDEVTGMIRLSLP
CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
YRFYHHYVRDLIVDFLLEYPKAQIEVNLCAEDTLPATDRDLVLTFDISRADGMIARPLFL
HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
AKHGVFVTKSYWEHNQTKNIEELDWIRLNDQKNLTYTDEKQTLKEIHVRPRLEVNDLDQV
HHCCEEEEHHHHHCCCCCCCCCCCEEEECCCCCCEECCHHHHHHHHHCCCCCCHHHHHHH
LHATVKGLGAARLPVHLVTSDMDLVEIFPDYSFPPRQSYLVYKQRKYQPRALTILVERII
HHHHHHHCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCEEEHHHCCCCHHHHHHHHHHH
SVMER
HHHCC
>Mature Secondary Structure
MEEKLGVRLLEKRGRELVPTETGKHYYQLLESQFSDLESNCHQLNEHVDEVTGMIRLSLP
CCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEECCC
YRFYHHYVRDLIVDFLLEYPKAQIEVNLCAEDTLPATDRDLVLTFDISRADGMIARPLFL
HHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCEEEEEECCCCCCCHHHHHHH
AKHGVFVTKSYWEHNQTKNIEELDWIRLNDQKNLTYTDEKQTLKEIHVRPRLEVNDLDQV
HHCCEEEEHHHHHCCCCCCCCCCCEEEECCCCCCEECCHHHHHHHHHCCCCCCHHHHHHH
LHATVKGLGAARLPVHLVTSDMDLVEIFPDYSFPPRQSYLVYKQRKYQPRALTILVERII
HHHHHHHCCCCCCEEEEEECCCHHHHCCCCCCCCCCCCCEEEHHHCCCCHHHHHHHHHHH
SVMER
HHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8635745; 7542800 [H]