| Definition | Vibrio fischeri ES114 chromosome I, complete genome. |
|---|---|
| Accession | NC_006840 |
| Length | 2,897,536 |
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The map label for this gene is 59711716
Identifier: 59711716
GI number: 59711716
Start: 1222096
End: 1223280
Strand: Direct
Name: 59711716
Synonym: VF_1109
Alternate gene names: NA
Gene position: 1222096-1223280 (Clockwise)
Preceding gene: 59711715
Following gene: 59711718
Centisome position: 42.18
GC content: 38.65
Gene sequence:
>1185_bases ATGATGAGAAAAATCGGATTATTCATGCCTTTTTTGTTGTTTGTTAGTTATGAAATACAAGCAGAAATTCCGGGTCTTGC ACCAGAGAAAAAATGGGATTTAAATGGCTATGTAAAGTACATGGCAACCAATACCATTCCTAACTCCTCCTCATATCCAT CTACCTTTGATAATTTAATTCATCAGCGTTTTAATTTTGAATATCGCTTTTCGGATCATTTACGTGTGAATCTTGGTATG CGTAATCGTCTTATGTTCGGTGATACAGCTGAATACCCAAATTATGGAGAGTACATCTCTTATGATCCTGGTTACGTTGA TTTATCGAAAAACTGGCTGGATAAAAAGGGCGTTGTGGGGAACTCGCAGTTTGATCGTGCTTATATCAACTGGAATAAAA ATGATTGGCAAGCAAGAGTTGGACGATTCCGTATCAACTGGGGAATGACGACGGTTTGGAATCCGAATGACATTTTCAAT TCTTATTCCATTTATGATTTTGATTATGAAGAGCGTCCAGGAACGGATGCCATAATGGTAAGCAAAAAACTTGGTTTTGC TAGCTCAATTGATATGGTGTTTAACCCTAATTCAAACAGTGAGCTTGATAGCTATGCAACACGATACCTGTTTAATAAAC AAGGGTGGGACATGCAAGTTCTATTAGGTAAATCTCACCTTGATTATGTGCTTGGTGCCGGTTTTGCTGGGGACATTTAT GGAGCAGGGTTGAGAGGCGAATTCAGTTGGTTTGAACCCACTCAGAGTCGTTATGACAACCAAGATCTCGTTGCATCCAG TGTATCAAGCCTTGAAATGGATTATCGATTTAACAGTGTGAATAATTGGGTGCTACAAGGCTCTGTGATGCATATCTCTG AACCGCAAGATGTAGATAGTGTAATGAGCTATTTAAATCTCCCATTAACGGCACGAACCCTCAGTTTTACCCACTGGACT TGGTACTCAAGTTTAGGTTTTGATATCTCTTCTTTGTCACGCATGAATATCATGGGAAGTTATTATGACGATGGTTCTTA TTTTATAGGGTTAAACCAAACCTATTCGTTATCCGATAACTGGCAGCTTATTGGGGTTGTGCAATATTTTGATGGCATGA ATGATAGTGTATTTGGTGAAAACCCAAGTACTTTATTGTATGCGCAAGTGAAGTGGAGTTTTTAA
Upstream 100 bases:
>100_bases CACCAACAAATTTAACCGAAGAGCAGAAAACATTGCTCATGAAGTTTAAAGAAATCGCATAACTAGCGGAAATATTTAAC GAGAAAGGAGGCGTGAATAT
Downstream 100 bases:
>100_bases TATAATCACTTGCTCTCAAGTCTTTTTCTTTCGCTACTTCTGATTAATTACTGTGATTGGTATAAGTCTAGGTTGCTTTT TGCTTTATCACGACATAACC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 394; Mature: 394
Protein sequence:
>394_residues MMRKIGLFMPFLLFVSYEIQAEIPGLAPEKKWDLNGYVKYMATNTIPNSSSYPSTFDNLIHQRFNFEYRFSDHLRVNLGM RNRLMFGDTAEYPNYGEYISYDPGYVDLSKNWLDKKGVVGNSQFDRAYINWNKNDWQARVGRFRINWGMTTVWNPNDIFN SYSIYDFDYEERPGTDAIMVSKKLGFASSIDMVFNPNSNSELDSYATRYLFNKQGWDMQVLLGKSHLDYVLGAGFAGDIY GAGLRGEFSWFEPTQSRYDNQDLVASSVSSLEMDYRFNSVNNWVLQGSVMHISEPQDVDSVMSYLNLPLTARTLSFTHWT WYSSLGFDISSLSRMNIMGSYYDDGSYFIGLNQTYSLSDNWQLIGVVQYFDGMNDSVFGENPSTLLYAQVKWSF
Sequences:
>Translated_394_residues MMRKIGLFMPFLLFVSYEIQAEIPGLAPEKKWDLNGYVKYMATNTIPNSSSYPSTFDNLIHQRFNFEYRFSDHLRVNLGM RNRLMFGDTAEYPNYGEYISYDPGYVDLSKNWLDKKGVVGNSQFDRAYINWNKNDWQARVGRFRINWGMTTVWNPNDIFN SYSIYDFDYEERPGTDAIMVSKKLGFASSIDMVFNPNSNSELDSYATRYLFNKQGWDMQVLLGKSHLDYVLGAGFAGDIY GAGLRGEFSWFEPTQSRYDNQDLVASSVSSLEMDYRFNSVNNWVLQGSVMHISEPQDVDSVMSYLNLPLTARTLSFTHWT WYSSLGFDISSLSRMNIMGSYYDDGSYFIGLNQTYSLSDNWQLIGVVQYFDGMNDSVFGENPSTLLYAQVKWSF >Mature_394_residues MMRKIGLFMPFLLFVSYEIQAEIPGLAPEKKWDLNGYVKYMATNTIPNSSSYPSTFDNLIHQRFNFEYRFSDHLRVNLGM RNRLMFGDTAEYPNYGEYISYDPGYVDLSKNWLDKKGVVGNSQFDRAYINWNKNDWQARVGRFRINWGMTTVWNPNDIFN SYSIYDFDYEERPGTDAIMVSKKLGFASSIDMVFNPNSNSELDSYATRYLFNKQGWDMQVLLGKSHLDYVLGAGFAGDIY GAGLRGEFSWFEPTQSRYDNQDLVASSVSSLEMDYRFNSVNNWVLQGSVMHISEPQDVDSVMSYLNLPLTARTLSFTHWT WYSSLGFDISSLSRMNIMGSYYDDGSYFIGLNQTYSLSDNWQLIGVVQYFDGMNDSVFGENPSTLLYAQVKWSF
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45575; Mature: 45575
Theoretical pI: Translated: 4.61; Mature: 4.61
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 4.1 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 4.1 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRKIGLFMPFLLFVSYEIQAEIPGLAPEKKWDLNGYVKYMATNTIPNSSSYPSTFDNLI CCCHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH HQRFNFEYRFSDHLRVNLGMRNRLMFGDTAEYPNYGEYISYDPGYVDLSKNWLDKKGVVG HHHCCCEEEECCEEEEEECCCCEEEECCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCC NSQFDRAYINWNKNDWQARVGRFRINWGMTTVWNPNDIFNSYSIYDFDYEERPGTDAIMV CCCCCEEEEECCCCCCCEEEEEEEEECCEEEEECCHHHCCCEEEEECCCCCCCCCCEEEE SKKLGFASSIDMVFNPNSNSELDSYATRYLFNKQGWDMQVLLGKSHLDYVLGAGFAGDIY EECCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCCCCC GAGLRGEFSWFEPTQSRYDNQDLVASSVSSLEMDYRFNSVNNWVLQGSVMHISEPQDVDS CCCCCCCCCCCCCHHHHCCCHHHHHHHHHHEEEEEEECCCCCEEEECEEEECCCCCCHHH VMSYLNLPLTARTLSFTHWTWYSSLGFDISSLSRMNIMGSYYDDGSYFIGLNQTYSLSDN HHHHHCCCEEEEEEEEEEEEEEHHCCCCHHHHHHEEEEEEEECCCCEEEECCCEEECCCC WQLIGVVQYFDGMNDSVFGENPSTLLYAQVKWSF CEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECC >Mature Secondary Structure MMRKIGLFMPFLLFVSYEIQAEIPGLAPEKKWDLNGYVKYMATNTIPNSSSYPSTFDNLI CCCHHHHHHHHHHHEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHH HQRFNFEYRFSDHLRVNLGMRNRLMFGDTAEYPNYGEYISYDPGYVDLSKNWLDKKGVVG HHHCCCEEEECCEEEEEECCCCEEEECCCCCCCCCCCEEECCCCEEECCCCCCCCCCCCC NSQFDRAYINWNKNDWQARVGRFRINWGMTTVWNPNDIFNSYSIYDFDYEERPGTDAIMV CCCCCEEEEECCCCCCCEEEEEEEEECCEEEEECCHHHCCCEEEEECCCCCCCCCCEEEE SKKLGFASSIDMVFNPNSNSELDSYATRYLFNKQGWDMQVLLGKSHLDYVLGAGFAGDIY EECCCCCCCEEEEECCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCCCCC GAGLRGEFSWFEPTQSRYDNQDLVASSVSSLEMDYRFNSVNNWVLQGSVMHISEPQDVDS CCCCCCCCCCCCCHHHHCCCHHHHHHHHHHEEEEEEECCCCCEEEECEEEECCCCCCHHH VMSYLNLPLTARTLSFTHWTWYSSLGFDISSLSRMNIMGSYYDDGSYFIGLNQTYSLSDN HHHHHCCCEEEEEEEEEEEEEEHHCCCCHHHHHHEEEEEEEECCCCEEEECCCEEECCCC WQLIGVVQYFDGMNDSVFGENPSTLLYAQVKWSF CEEEEEEEECCCCCCCCCCCCCCEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA