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The map label for this gene is ycfQ [H]

Identifier: 59711688

GI number: 59711688

Start: 1191958

End: 1192542

Strand: Reverse

Name: ycfQ [H]

Synonym: VF_1081

Alternate gene names: 59711688

Gene position: 1192542-1191958 (Counterclockwise)

Preceding gene: 172087689

Following gene: 59711686

Centisome position: 41.16

GC content: 36.58

Gene sequence:

>585_bases
ATGGCTAAAAATTCGAAGTTTGATCGCGTACAAGTTGTTGATAAAGCAGTTGATCTTTATTGGGAGAAAGGATTCCATGG
GACATCAATGCGTAATCTTCAAGAAGTGATAGATATGCGTCCAGGAAGTATTTATGCCACCTTTGGCAGCAAAGAAGGAT
TATTTAAAGAATCGTTACAGCGTTACACTCAATCTGGTATTTTGCATTTAGAACAATGCTGTCATGAACAAAAATCTCCT
TTACTGGGGCTTAAGTCATTTATTCATAACATTGTTGTAGAGAAACGCTCTAGTGCGCCAAGTGGCATGTGCATGTTAGT
AAAAACGGTCACTGAGTTAACAAATGAAAATGAAGAATTATTAACTGAAGCAAAACGTTCTTTGAAGATAATGGAATCTG
AGTTTGAAAAGGTATTAAGACAAGCGCAAGAAATTGGAGAAATAGAGAAAGAGAAAGATACAAAACAGCTTGCTCAATTT
GTTCAGGTCCAAATAGCAGGATTAAGAACGTATGCACGCACTGTAGATAGCGATCTTCCATTACAGAACATGCTGGATAA
TATGTTTAGTCACTACCCATTCTAA

Upstream 100 bases:

>100_bases
CTGGTATTCGTTGGGCTAAAAACAATATAACTAGACTTGAACGATCGTTCAAGATAATATTTGAACAAATGTTCAAGAAA
GTTATTAAAGGCATATTCTT

Downstream 100 bases:

>100_bases
ATATCATTTACTTGTGTGGAACAATACTTATCCGAACATATAAATGCTCGGATAGTAAAATATCAGCACAGATGAACAAC
AATGAACTAAAGATTATAGT

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 194; Mature: 193

Protein sequence:

>194_residues
MAKNSKFDRVQVVDKAVDLYWEKGFHGTSMRNLQEVIDMRPGSIYATFGSKEGLFKESLQRYTQSGILHLEQCCHEQKSP
LLGLKSFIHNIVVEKRSSAPSGMCMLVKTVTELTNENEELLTEAKRSLKIMESEFEKVLRQAQEIGEIEKEKDTKQLAQF
VQVQIAGLRTYARTVDSDLPLQNMLDNMFSHYPF

Sequences:

>Translated_194_residues
MAKNSKFDRVQVVDKAVDLYWEKGFHGTSMRNLQEVIDMRPGSIYATFGSKEGLFKESLQRYTQSGILHLEQCCHEQKSP
LLGLKSFIHNIVVEKRSSAPSGMCMLVKTVTELTNENEELLTEAKRSLKIMESEFEKVLRQAQEIGEIEKEKDTKQLAQF
VQVQIAGLRTYARTVDSDLPLQNMLDNMFSHYPF
>Mature_193_residues
AKNSKFDRVQVVDKAVDLYWEKGFHGTSMRNLQEVIDMRPGSIYATFGSKEGLFKESLQRYTQSGILHLEQCCHEQKSPL
LGLKSFIHNIVVEKRSSAPSGMCMLVKTVTELTNENEELLTEAKRSLKIMESEFEKVLRQAQEIGEIEKEKDTKQLAQFV
QVQIAGLRTYARTVDSDLPLQNMLDNMFSHYPF

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081833, Length=171, Percent_Identity=31.5789473684211, Blast_Score=84, Evalue=5e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR012287
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 22268; Mature: 22137

Theoretical pI: Translated: 6.68; Mature: 6.68

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
4.1 %Met     (Translated Protein)
5.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKNSKFDRVQVVDKAVDLYWEKGFHGTSMRNLQEVIDMRPGSIYATFGSKEGLFKESLQ
CCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
RYTQSGILHLEQCCHEQKSPLLGLKSFIHNIVVEKRSSAPSGMCMLVKTVTELTNENEEL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
LTEAKRSLKIMESEFEKVLRQAQEIGEIEKEKDTKQLAQFVQVQIAGLRTYARTVDSDLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LQNMLDNMFSHYPF
HHHHHHHHHHCCCC
>Mature Secondary Structure 
AKNSKFDRVQVVDKAVDLYWEKGFHGTSMRNLQEVIDMRPGSIYATFGSKEGLFKESLQ
CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHH
RYTQSGILHLEQCCHEQKSPLLGLKSFIHNIVVEKRSSAPSGMCMLVKTVTELTNENEEL
HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHH
LTEAKRSLKIMESEFEKVLRQAQEIGEIEKEKDTKQLAQFVQVQIAGLRTYARTVDSDLP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
LQNMLDNMFSHYPF
HHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8905232; 9278503 [H]