BacMap

Definition	Vibrio fischeri ES114 chromosome I, complete genome.
Accession	NC_006840
Length	2,897,536

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The map label for this gene is yciK [H]

Identifier: 59711646

GI number: 59711646

Start: 1145472

End: 1146212

Strand: Reverse

Name: yciK [H]

Synonym: VF_1039

Alternate gene names: 59711646

Gene position: 1146212-1145472 (Counterclockwise)

Preceding gene: 172087688

Following gene: 59711644

Centisome position: 39.56

GC content: 41.16

Gene sequence:

>741_bases
GTGGATTATCAGGTTTCTTCTGACGCATTAAAAAATAAAGTTATTTTAGTTACTGGTGCTGGTGATGGTATTGGTAAACA
AGCCGCCTTACATTATGCTCAACATGGTGCTACCGTTATTTTATTAGGGCGCACTGTCGCTAAATTAGAAGCGGTCTATG
ATGAGATTGAAGCAGCAGGCTACCCAACACCTGCAATTGTTCCTTTAGATTTAAAAGGTGCCACCAAACAGCACTACGTT
GACATGGCTGAAACCATTCAAAGCCAATTTGGAAAGCTAGATGGCCTTCTTCATAATGCTGGCCTATTGGGTATGCTTAG
TCCGTTTGAACAATTTGAAGAATCCATTTTTGATGAAGTCATGCAGATCAATGTCAAAGCTCAATTTTTGATGACACAAG
CCCTACTTCCTGTTTTACAACAATCTGATGATGCTCGAATTGTCTTTACCACTTCAACAGTTGGACACCAAGGGCGAGCA
TTCTGGGGAGCCTATGCTATCTCCAAATTCGCAACAGAAGGTATGATGCAGACACTGGCGCATGAAATGGAAGGAACGAC
TGTAAAAGTGAATGCTATCAATCCTGGTGGCACACACACTCGTATGCGTGCTCAAGCTTTTCCAGCTGAAGATATTAGTT
TACTTAAAACACCAAAAGACATTATGCCTCTTTATGTGTATTTAATGGCACCAGAAGGCGTTAACGTACACAGTCAATGT
ATTGATGCTCAGCCAAAATAA

Upstream 100 bases:

>100_bases
TATGATAATAAATCGCACTAAACGCGCATTTTTACATCAACTTACAATACAAATTTGTAAAAATTTCTCAAGGTGAACGT
TGAAATACAAGGATTACAGA

Downstream 100 bases:

>100_bases
ATTTTTAAAGAGACGAACAAAAAAGGGTTGCTACCTTACGGTACAACCCTTTTATTATTCATCTAAGTGTTTTTAACGAT
GCAATTAACGCTGTCTAGGT

Product: short chain dehydrogenase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 246; Mature: 246

Protein sequence:

>246_residues
MDYQVSSDALKNKVILVTGAGDGIGKQAALHYAQHGATVILLGRTVAKLEAVYDEIEAAGYPTPAIVPLDLKGATKQHYV
DMAETIQSQFGKLDGLLHNAGLLGMLSPFEQFEESIFDEVMQINVKAQFLMTQALLPVLQQSDDARIVFTTSTVGHQGRA
FWGAYAISKFATEGMMQTLAHEMEGTTVKVNAINPGGTHTRMRAQAFPAEDISLLKTPKDIMPLYVYLMAPEGVNVHSQC
IDAQPK

Sequences:

>Translated_246_residues
MDYQVSSDALKNKVILVTGAGDGIGKQAALHYAQHGATVILLGRTVAKLEAVYDEIEAAGYPTPAIVPLDLKGATKQHYV
DMAETIQSQFGKLDGLLHNAGLLGMLSPFEQFEESIFDEVMQINVKAQFLMTQALLPVLQQSDDARIVFTTSTVGHQGRA
FWGAYAISKFATEGMMQTLAHEMEGTTVKVNAINPGGTHTRMRAQAFPAEDISLLKTPKDIMPLYVYLMAPEGVNVHSQC
IDAQPK
>Mature_246_residues
MDYQVSSDALKNKVILVTGAGDGIGKQAALHYAQHGATVILLGRTVAKLEAVYDEIEAAGYPTPAIVPLDLKGATKQHYV
DMAETIQSQFGKLDGLLHNAGLLGMLSPFEQFEESIFDEVMQINVKAQFLMTQALLPVLQQSDDARIVFTTSTVGHQGRA
FWGAYAISKFATEGMMQTLAHEMEGTTVKVNAINPGGTHTRMRAQAFPAEDISLLKTPKDIMPLYVYLMAPEGVNVHSQC
IDAQPK

Specific function: Unknown

COG id: COG1028

COG function: function code IQR; Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]

Homologues:

Organism=Homo sapiens, GI20149619, Length=213, Percent_Identity=31.4553990610329, Blast_Score=91, Evalue=1e-18,
Organism=Homo sapiens, GI32483357, Length=189, Percent_Identity=29.6296296296296, Blast_Score=85, Evalue=7e-17,
Organism=Homo sapiens, GI157739938, Length=194, Percent_Identity=29.3814432989691, Blast_Score=84, Evalue=9e-17,
Organism=Homo sapiens, GI4504505, Length=237, Percent_Identity=26.1603375527426, Blast_Score=81, Evalue=7e-16,
Organism=Homo sapiens, GI4503817, Length=195, Percent_Identity=30.2564102564103, Blast_Score=80, Evalue=1e-15,
Organism=Homo sapiens, GI126723191, Length=186, Percent_Identity=29.0322580645161, Blast_Score=79, Evalue=4e-15,
Organism=Homo sapiens, GI223718074, Length=194, Percent_Identity=28.8659793814433, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI33667109, Length=187, Percent_Identity=27.807486631016, Blast_Score=76, Evalue=2e-14,
Organism=Homo sapiens, GI142976729, Length=195, Percent_Identity=26.6666666666667, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI5031737, Length=187, Percent_Identity=27.807486631016, Blast_Score=76, Evalue=3e-14,
Organism=Homo sapiens, GI19923817, Length=257, Percent_Identity=22.568093385214, Blast_Score=75, Evalue=8e-14,
Organism=Homo sapiens, GI109715829, Length=235, Percent_Identity=25.1063829787234, Blast_Score=72, Evalue=4e-13,
Organism=Homo sapiens, GI210032110, Length=186, Percent_Identity=24.7311827956989, Blast_Score=71, Evalue=8e-13,
Organism=Homo sapiens, GI10190704, Length=189, Percent_Identity=25.3968253968254, Blast_Score=70, Evalue=2e-12,
Organism=Homo sapiens, GI32455239, Length=229, Percent_Identity=30.1310043668122, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI5031765, Length=229, Percent_Identity=30.1310043668122, Blast_Score=69, Evalue=3e-12,
Organism=Homo sapiens, GI7657478, Length=235, Percent_Identity=26.3829787234043, Blast_Score=69, Evalue=4e-12,
Organism=Homo sapiens, GI166795268, Length=251, Percent_Identity=30.2788844621514, Blast_Score=69, Evalue=5e-12,
Organism=Homo sapiens, GI225579078, Length=265, Percent_Identity=28.3018867924528, Blast_Score=67, Evalue=1e-11,
Organism=Homo sapiens, GI146231950, Length=240, Percent_Identity=30.4166666666667, Blast_Score=66, Evalue=3e-11,
Organism=Homo sapiens, GI4557649, Length=191, Percent_Identity=28.2722513089005, Blast_Score=66, Evalue=4e-11,
Organism=Homo sapiens, GI40548397, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI214010158, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI214010156, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=5e-11,
Organism=Homo sapiens, GI22758144, Length=195, Percent_Identity=27.1794871794872, Blast_Score=65, Evalue=5e-11,
Organism=Escherichia coli, GI1787526, Length=245, Percent_Identity=52.2448979591837, Blast_Score=243, Evalue=8e-66,
Organism=Escherichia coli, GI87082100, Length=217, Percent_Identity=32.258064516129, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1790717, Length=195, Percent_Identity=29.2307692307692, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1789208, Length=251, Percent_Identity=27.4900398406374, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786701, Length=191, Percent_Identity=30.3664921465969, Blast_Score=71, Evalue=6e-14,
Organism=Escherichia coli, GI1787820, Length=253, Percent_Identity=26.0869565217391, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1787335, Length=193, Percent_Identity=26.9430051813472, Blast_Score=71, Evalue=7e-14,
Organism=Escherichia coli, GI1789378, Length=252, Percent_Identity=27.3809523809524, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI1787905, Length=245, Percent_Identity=27.7551020408163, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1786812, Length=202, Percent_Identity=25.7425742574257, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788459, Length=235, Percent_Identity=27.6595744680851, Blast_Score=61, Evalue=9e-11,
Organism=Caenorhabditis elegans, GI17560220, Length=227, Percent_Identity=29.9559471365639, Blast_Score=88, Evalue=3e-18,
Organism=Caenorhabditis elegans, GI193204405, Length=205, Percent_Identity=30.7317073170732, Blast_Score=87, Evalue=6e-18,
Organism=Caenorhabditis elegans, GI17562906, Length=204, Percent_Identity=29.4117647058824, Blast_Score=85, Evalue=4e-17,
Organism=Caenorhabditis elegans, GI17562908, Length=223, Percent_Identity=28.2511210762332, Blast_Score=84, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI71994604, Length=189, Percent_Identity=30.6878306878307, Blast_Score=83, Evalue=1e-16,
Organism=Caenorhabditis elegans, GI17544670, Length=198, Percent_Identity=30.3030303030303, Blast_Score=82, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI17531453, Length=222, Percent_Identity=27.027027027027, Blast_Score=81, Evalue=6e-16,
Organism=Caenorhabditis elegans, GI17568967, Length=226, Percent_Identity=29.2035398230088, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17562910, Length=225, Percent_Identity=26.6666666666667, Blast_Score=80, Evalue=8e-16,
Organism=Caenorhabditis elegans, GI17551412, Length=206, Percent_Identity=30.5825242718447, Blast_Score=78, Evalue=4e-15,
Organism=Caenorhabditis elegans, GI17560150, Length=221, Percent_Identity=29.4117647058824, Blast_Score=78, Evalue=5e-15,
Organism=Caenorhabditis elegans, GI17508895, Length=201, Percent_Identity=29.8507462686567, Blast_Score=77, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI71997402, Length=184, Percent_Identity=31.5217391304348, Blast_Score=76, Evalue=1e-14,
Organism=Caenorhabditis elegans, GI17562904, Length=196, Percent_Identity=26.0204081632653, Blast_Score=75, Evalue=3e-14,
Organism=Caenorhabditis elegans, GI17560676, Length=206, Percent_Identity=27.6699029126214, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI17562990, Length=191, Percent_Identity=29.8429319371728, Blast_Score=73, Evalue=1e-13,
Organism=Caenorhabditis elegans, GI17570069, Length=183, Percent_Identity=30.6010928961749, Blast_Score=72, Evalue=2e-13,
Organism=Caenorhabditis elegans, GI17536651, Length=194, Percent_Identity=29.3814432989691, Blast_Score=72, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI17561402, Length=194, Percent_Identity=26.2886597938144, Blast_Score=71, Evalue=4e-13,
Organism=Caenorhabditis elegans, GI71994600, Length=189, Percent_Identity=31.2169312169312, Blast_Score=71, Evalue=5e-13,
Organism=Caenorhabditis elegans, GI17536025, Length=196, Percent_Identity=30.1020408163265, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI71982365, Length=193, Percent_Identity=27.4611398963731, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17559104, Length=222, Percent_Identity=26.5765765765766, Blast_Score=69, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17567345, Length=185, Percent_Identity=24.8648648648649, Blast_Score=68, Evalue=5e-12,
Organism=Caenorhabditis elegans, GI193203115, Length=204, Percent_Identity=26.4705882352941, Blast_Score=67, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17560332, Length=201, Percent_Identity=26.865671641791, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI115534660, Length=191, Percent_Identity=27.7486910994764, Blast_Score=66, Evalue=1e-11,
Organism=Caenorhabditis elegans, GI17564282, Length=175, Percent_Identity=27.4285714285714, Blast_Score=66, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193203117, Length=192, Percent_Identity=27.0833333333333, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17555706, Length=203, Percent_Identity=27.0935960591133, Blast_Score=65, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17557780, Length=206, Percent_Identity=26.6990291262136, Blast_Score=65, Evalue=4e-11,
Organism=Saccharomyces cerevisiae, GI6322861, Length=229, Percent_Identity=31.0043668122271, Blast_Score=94, Evalue=2e-20,
Organism=Saccharomyces cerevisiae, GI6323882, Length=233, Percent_Identity=29.1845493562232, Blast_Score=78, Evalue=1e-15,
Organism=Saccharomyces cerevisiae, GI6322227, Length=201, Percent_Identity=28.8557213930348, Blast_Score=65, Evalue=1e-11,
Organism=Drosophila melanogaster, GI24644339, Length=196, Percent_Identity=36.2244897959184, Blast_Score=98, Evalue=6e-21,
Organism=Drosophila melanogaster, GI28571526, Length=191, Percent_Identity=36.6492146596859, Blast_Score=97, Evalue=7e-21,
Organism=Drosophila melanogaster, GI23397609, Length=191, Percent_Identity=37.696335078534, Blast_Score=97, Evalue=9e-21,
Organism=Drosophila melanogaster, GI24643142, Length=217, Percent_Identity=35.9447004608295, Blast_Score=96, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21355319, Length=217, Percent_Identity=29.4930875576037, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI21357041, Length=190, Percent_Identity=32.1052631578947, Blast_Score=86, Evalue=3e-17,
Organism=Drosophila melanogaster, GI18859837, Length=239, Percent_Identity=31.3807531380753, Blast_Score=83, Evalue=2e-16,
Organism=Drosophila melanogaster, GI45553409, Length=200, Percent_Identity=33, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24647948, Length=200, Percent_Identity=33, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI24647946, Length=200, Percent_Identity=33.5, Blast_Score=79, Evalue=2e-15,
Organism=Drosophila melanogaster, GI281364892, Length=233, Percent_Identity=27.4678111587983, Blast_Score=78, Evalue=4e-15,
Organism=Drosophila melanogaster, GI21358495, Length=204, Percent_Identity=26.9607843137255, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24640492, Length=192, Percent_Identity=27.6041666666667, Blast_Score=76, Evalue=2e-14,
Organism=Drosophila melanogaster, GI21357673, Length=201, Percent_Identity=25.3731343283582, Blast_Score=69, Evalue=2e-12,
Organism=Drosophila melanogaster, GI24639444, Length=250, Percent_Identity=26, Blast_Score=69, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24580925, Length=210, Percent_Identity=25.7142857142857, Blast_Score=65, Evalue=4e-11,
Organism=Drosophila melanogaster, GI116007234, Length=250, Percent_Identity=25.2, Blast_Score=65, Evalue=5e-11,
Organism=Drosophila melanogaster, GI17737361, Length=212, Percent_Identity=29.2452830188679, Blast_Score=65, Evalue=6e-11,
Organism=Drosophila melanogaster, GI22024069, Length=261, Percent_Identity=31.4176245210728, Blast_Score=64, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002198
- InterPro:   IPR002347
- InterPro:   IPR016040
- InterPro:   IPR020904 [H]

Pfam domain/function: PF00106 adh_short [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 26723; Mature: 26723

Theoretical pI: Translated: 5.53; Mature: 5.53

Prosite motif: PS00061 ADH_SHORT

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDYQVSSDALKNKVILVTGAGDGIGKQAALHYAQHGATVILLGRTVAKLEAVYDEIEAAG
CCCCCCCHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCC
YPTPAIVPLDLKGATKQHYVDMAETIQSQFGKLDGLLHNAGLLGMLSPFEQFEESIFDEV
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHH
MQINVKAQFLMTQALLPVLQQSDDARIVFTTSTVGHQGRAFWGAYAISKFATEGMMQTLA
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HEMEGTTVKVNAINPGGTHTRMRAQAFPAEDISLLKTPKDIMPLYVYLMAPEGVNVHSQC
HHHCCCEEEEEEECCCCCCCEEEECCCCCCCHHHHCCCHHHHHEEEEEECCCCCCHHHHH
IDAQPK
CCCCCC
>Mature Secondary Structure
MDYQVSSDALKNKVILVTGAGDGIGKQAALHYAQHGATVILLGRTVAKLEAVYDEIEAAG
CCCCCCCHHHCCCEEEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHCC
YPTPAIVPLDLKGATKQHYVDMAETIQSQFGKLDGLLHNAGLLGMLSPFEQFEESIFDEV
CCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHHHHHHHHHHH
MQINVKAQFLMTQALLPVLQQSDDARIVFTTSTVGHQGRAFWGAYAISKFATEGMMQTLA
HHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHH
HEMEGTTVKVNAINPGGTHTRMRAQAFPAEDISLLKTPKDIMPLYVYLMAPEGVNVHSQC
HHHCCCEEEEEEECCCCCCCEEEECCCCCCCHHHHCCCHHHHHEEEEEECCCCCCHHHHH
IDAQPK
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Oxidoreductases; Acting on the CH-OH group of donors; With NAD or NADP as acceptor [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503; 1885549 [H]