Click here to switch to the map view.

The map label for this gene is priC [C]

Identifier: 59711614

GI number: 59711614

Start: 1111664

End: 1112215

Strand: Reverse

Name: priC [C]

Synonym: VF_1007

Alternate gene names: 59711614

Gene position: 1112215-1111664 (Counterclockwise)

Preceding gene: 59711615

Following gene: 59711613

Centisome position: 38.38

GC content: 40.22

Gene sequence:

>552_bases
ATGACTAATTTTACCTCTATCGAAATCATGCTAGAACAACTAGGTAAAACGGCGGCTGAAATTGACCGACGTCGAGGGGA
ACAGCGACTCCCTTTATTTGATGAACGTCTATTTGGATGCAGAAGCCGCTATCTTGTGCCCTGTATAAATGAAGCAAAAG
CAACGCTTGGATCGATTCAACGAGAAGAAAAAGCAAATATTCTTACTGCACAAAGAGCGGAATATTTAACGCAAATGTTG
GTTGCTCAAATTGAAGCGATACAAAGAGAAGTAGCAACTCAACGTATACGCTCTAACGAACCTCGTCCGAAGGGAAGCTA
TAAAAAACCCATTAGTGATATGTATCAAGACCTAGCTCAACACCAAGAGTGGGAACGCCGTTTAGCACAAATGGTAAATG
ATCAAGAACTGGCAATTAATCAATGCCATTCATTCTCTCAGCAGCAAGATCTACAACAAAAACTGCTAGCAACAGAAAAA
CGCTTACAACGCTGTAAAGAAGCAATGATCCGATTAGAACAACAAATTACTTATCGAGAACAACATGACTAA

Upstream 100 bases:

>100_bases
ATTCGTTTTGGATCTAAGTTTATTCGACCAGTGTTTGTAACTGTGGTTTGTATCTTGGCTGTTAAACTCGCTTTAGACGC
TTGGTTCTAACGGAACAATT

Downstream 100 bases:

>100_bases
CCCCCAAAATAATCAGCAAATACCGCAAATCGAAACCGAAGTTGAAGTTCAAACAGAGACTCCTAACCCTCTAGATAACG
CACCGGATGAAATCAAATTA

Product: primosomal replication protein N'

Products: NA

Alternate protein names: Primosomal Replication Protein N; Primosomal Replication Protein N``; Primosomal Replication Protein N\\'

Number of amino acids: Translated: 183; Mature: 182

Protein sequence:

>183_residues
MTNFTSIEIMLEQLGKTAAEIDRRRGEQRLPLFDERLFGCRSRYLVPCINEAKATLGSIQREEKANILTAQRAEYLTQML
VAQIEAIQREVATQRIRSNEPRPKGSYKKPISDMYQDLAQHQEWERRLAQMVNDQELAINQCHSFSQQQDLQQKLLATEK
RLQRCKEAMIRLEQQITYREQHD

Sequences:

>Translated_183_residues
MTNFTSIEIMLEQLGKTAAEIDRRRGEQRLPLFDERLFGCRSRYLVPCINEAKATLGSIQREEKANILTAQRAEYLTQML
VAQIEAIQREVATQRIRSNEPRPKGSYKKPISDMYQDLAQHQEWERRLAQMVNDQELAINQCHSFSQQQDLQQKLLATEK
RLQRCKEAMIRLEQQITYREQHD
>Mature_182_residues
TNFTSIEIMLEQLGKTAAEIDRRRGEQRLPLFDERLFGCRSRYLVPCINEAKATLGSIQREEKANILTAQRAEYLTQMLV
AQIEAIQREVATQRIRSNEPRPKGSYKKPISDMYQDLAQHQEWERRLAQMVNDQELAINQCHSFSQQQDLQQKLLATEKR
LQRCKEAMIRLEQQITYREQHD

Specific function: Pria Recognizes A Specific Hairpin Sequence On Bacteriophage Phi X174 Ssdna. This Structure Is Then Recognized And Bound By Proteins Prib And Pric. Formation Of The Primosome Proceeds With The Subsequent Actions Of Dnab, Dnac, Dnat And Primase. [C]

COG id: COG3923

COG function: function code L; Primosomal replication protein N''

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1786673, Length=145, Percent_Identity=29.6551724137931, Blast_Score=63, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21580; Mature: 21449

Theoretical pI: Translated: 8.32; Mature: 8.32

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
5.5 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNFTSIEIMLEQLGKTAAEIDRRRGEQRLPLFDERLFGCRSRYLVPCINEAKATLGSIQ
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
REEKANILTAQRAEYLTQMLVAQIEAIQREVATQRIRSNEPRPKGSYKKPISDMYQDLAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
HQEWERRLAQMVNDQELAINQCHSFSQQQDLQQKLLATEKRLQRCKEAMIRLEQQITYRE
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QHD
CCC
>Mature Secondary Structure 
TNFTSIEIMLEQLGKTAAEIDRRRGEQRLPLFDERLFGCRSRYLVPCINEAKATLGSIQ
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
REEKANILTAQRAEYLTQMLVAQIEAIQREVATQRIRSNEPRPKGSYKKPISDMYQDLAQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHH
HQEWERRLAQMVNDQELAINQCHSFSQQQDLQQKLLATEKRLQRCKEAMIRLEQQITYRE
HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QHD
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA